BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24140.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326701 jgi|Araly1|326701|fgenesh1_pm.C_scaffold_6001921 2237 0.0
Ahg894303 jgi|Araly1|894303|Al_scaffold_0006_2299 503 2e-141
Ahg941951 jgi|Araly1|941951|scaffold_602495.1 444 1e-123
> Ahg326701 jgi|Araly1|326701|fgenesh1_pm.C_scaffold_6001921
Length=1512
Score = 2237 bits (1211), Expect = 0.0
Identities = 1391/1477 (94%), Gaps = 16/1477 (1%)
Strand=Plus/Plus
Query 5 ATGACTTACGCGTGGTTATGGACGCTTCTCGCCTTTGTTCTGACATGGATGGTTTTTCAC 64
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGACTTACGCGTGGTTATGGACGCTTCTCGCCTTCGTTCTGACATGGATGGTTTTACAC 60
Query 65 CTCATCAAGATGAAGAAGGCGGCAACCGGAGATTTAGAGGCCGAGGCAGAAGCA-AGAAG 123
|||||||||||||||||||||||||||| |||| ||||||| |||||||||| | |||
Sbjct 61 CTCATCAAGATGAAGAAGGCGGCAACCGAAGATGTAGAGGCAGAGGCAGAAG-AGAGATC 119
Query 124 AGATGGTGCAACGGATGTCATCATTGTTGGGGCGGGTGTTGCAGGCGCTTCTCTTGCTTA 183
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 AGATGGTGCCACTGATGTCATCATTGTTGGAGCGGGTGTTGCAGGCGCTTCTCTTGCTTA 179
Query 184 TGCT-TTAGCTAAGGATGGACGACGAGTACATGTGATAGAGAGGGACTTAAAAGAGCCAC 242
|||| || || ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 180 TGCTCTT-GCGAAGGATGGACGACGAGTTCATGTGATAGAGAGGGACTTGAAAGAGCCAC 238
Query 243 AAAGATTCATGGGAGAGCTGATGCAAGCGGGAGGTCGCTTCATGTTAGCCCAGCTTGGCC 302
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 239 AAAGATTCATGGGAGAGCTTATGCAAGCGGGAGGCCGCTTCATGTTAGCCCAGCTTGGCC 298
Query 303 TCGAAGATTGTTTGGAGGACATAGACGCACAAGAAGCGAAGTCCTTGGCAATATACAAGG 362
||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||
Sbjct 299 TCGAAGATTGTTTGGAGGAGATAGACGCTCAAGAAGCCAAGTCCTTGGCAATTTACAAGG 358
Query 363 ATGGAAAACACGCGACATTGCCTTTTCCAGATGACAAG-AGTTTTCCTCATGAGCCAGTA 421
| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 359 ACGGAAAACACGCGACATTGCCTTTTCCAGATGACAAGAAG-TTTCCTCATGAACCAGTC 417
Query 422 GGTAGACTCTTACGTAATGGTCGGCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTT 481
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 418 GGTAGACTTTTACGTAATGGCCGTCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTT 477
Query 482 AGCAATGTTCAATTAGAAGAAGGAACAGTGAAGTCTTTAATTGAAGAAGAA-GGAGTGGT 540
|||||||| |||||||||||||||| | ||||||||||||||||||| || ||||||||
Sbjct 478 AGCAATGTACAATTAGAAGAAGGAATGGCGAAGTCTTTAATTGAAGAA-AATGGAGTGGT 536
Query 541 CAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAATAACGGCCTTTGCACCTCTTAC 600
||||||||||||||||| || ||||||||||| |||| |||||||||||||||||| ||
Sbjct 537 TAAAGGAGTGACATACAAGAACAGCGCAGGCGAGGAAACAACGGCCTTTGCACCTCTCAC 596
Query 601 TGTCGTATGCGATGGTTGTTATTCGAACCTTCGTCGGTCACTCGTGGATAATACTGAGGA 660
|||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 597 TGTCGTATGCGATGGTTGTTATTCAAACCTTCGCCGGTCACTCGTGGATAATTCTGAGGA 656
Query 661 AGTCCTCTCGTACATGGTGGGTTACGTCACGAAGAATAGCCGACTTGAAGATCCCCATAG 720
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 657 AGTGCTCTCGTACATGGTGGGTTATGTCACGAAGAATAGCCGACTTGAAGATCCACATAG 716
Query 721 TCTACAT-TTGATATTTTCTAAACCTTTGGTTTGTGTTATATATCAAATAACCAGTGATG 779
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 TCTACATCTT-ATATTTTCTAAACCTTTGGTCTGTGTTATATATCAAATAACCAGTGATG 775
Query 780 AAGTTCGTTGTGTTGCCGAAGTTCCCGCTGATAGTATTCCTTCTATAT-CGAATGGTGAA 838
||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 776 AAGTTCGTTGTGTAGCCGAAGTTCCCGCTGATAGTATTCCTTCTAT-TGCGAATGGCGAA 834
Query 839 ATGTCTACCTTCCTCAAGAAATCAATGGCTCCTCAGATACCTGAAACTGGAAATCTTCGG 898
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 835 ATGTCTACCTTCCTCAAGAAATCAATGGCTCCTCAGATACCTGCAACTGGAAATCTTCGT 894
Query 899 GAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAATCAACAGCGACGAAA 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 895 GAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAATCAACAGCGACAAAA 954
Query 959 AGTATGTCATCGAGATTGTGTGATAAAAGAGGAGTGATTGTGTTGGGAGATGCATTCAAT 1018
||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 955 AGTATGTCAGCAAGATTGTGTGATAAGAGAGGAGTGATTGTGTTGGGAGATGCATTCAAT 1014
Query 1019 ATGCGTCATCCTATAATCGCGTCAGGAATGATGGTTGCACTCTCGGACATTTGCATTCTA 1078
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1015 ATGCGTCATCCTATAATCGCGTCAGGGATGATGGTTGCTCTCTCGGACATTTGCATTCTA 1074
Query 1079 CGCAATCTTCTCAAACCATTGCCTAACCTCAGCAATACTAAGAAAGTCTCTGATCTTGTC 1138
|||||||| |||| |||||| ||||||||| ||||||||||||| ||||||||| |||||
Sbjct 1075 CGCAATCTACTCAGACCATTACCTAACCTCGGCAATACTAAGAAGGTCTCTGATATTGTC 1134
Query 1139 AAGTCCTTTTACATCATCCGCAAGCCAATGTCAGCGACCGTGAACACGCTCGCGAGTATC 1198
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1135 AAGTCCTTTTACATCATCCGCAAGCCAATGTCAGCGACCGTAAACACGCTGGCTAGTATC 1194
Query 1199 TTTTCACAAGTGCTTGTTGCTACAACAGACGAAGCAAGAGAGGGAATGCGACAAGGCTGC 1258
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1195 TTTTCGCAAGTGCTTGTTGCTACAACGGACGAAGCAAGAGAGGGAATGCGACAAGGCTGC 1254
Query 1259 TTCAATTACCTAGCTCGTGGAGATTTTAAAACAAGG-GGATTGATGACTATTCTCGGAGG 1317
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 1255 TTCAATTACCTAGCTCGTGGAGATTTTAAAACA-GCCGGAATGATGACTATTCTCGGAGG 1313
Query 1318 CATGAACCCTCACCCTCTTACTCTAGTCCTTCATCTTGTAGCCATCACCCTTACGTCCAT 1377
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CATGAACCCTCACCCCCTTACTCTAGTCCTTCATCTTGTAGCCATCACCCTTACGTCCAT 1373
Query 1378 GGGCCACTTGCTCTCTCCGTTTCCTTCGCCTCGT-CGCTTTTGGCATAGCCTCAGAATTC 1436
|||||||||||| ||||| |||||||||||| || ||||||||||||||||||||| ||
Sbjct 1374 GGGCCACTTGCTTTCTCCCTTTCCTTCGCCT-GTTCGCTTTTGGCATAGCCTCAGACTTT 1432
Query 1437 TTGCCTGGGCTTTGCAAATGTTGGGTGCACATTTAGT 1473
|||||||||||||||||||||||||||||||||||||
Sbjct 1433 TTGCCTGGGCTTTGCAAATGTTGGGTGCACATTTAGT 1469
> Ahg894303 jgi|Araly1|894303|Al_scaffold_0006_2299
Length=1560
Score = 503 bits (272), Expect = 2e-141
Identities = 1101/1485 (74%), Gaps = 121/1485 (8%)
Strand=Plus/Plus
Query 120 GAAGAGATGGTGCAAC-G--GATGTCATCATTGTTGGGGCGGGTGTT-GCAGGCGCTTCT 175
||| ||||||||| | | || || ||||| |||||||| || ||| || ||| | ||
Sbjct 128 GAAAAGATGGTGCTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGC-GGCTCGGCT 186
Query 176 CTTGCTTATGCT-TTAGCTAAGGATGGACGACGAGTACATGTGATAGAGAGGGACTTAAA 234
|| || |||||| || |||||||| || || ||||||||| | |||||||||||| | |
Sbjct 187 CTCGCATATGCTCTT-GCTAAGGACGGGCGTCGAGTACATATAATAGAGAGGGACATGAG 245
Query 235 AGAGCCACAAAGATTCATGGGAGAGCTGATGCAAGCGGGAGGTCGCTTCATGTTAGCCCA 294
||| ||| | ||| | ||||| ||| | |||||| | ||||| || |||||| | | |
Sbjct 246 AGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGAGGACGATTCATGCTCTCTAA 305
Query 295 GCTTGGCC-TCGAAGATTGTTTGG-AGGACATAGACGCACAAGAAGCGAAGTCCTTGGCA 352
|||||||| || |||||||||||| |||| ||||| || ||| |||| | | | |||||
Sbjct 306 GCTTGGCCTTC-AAGATTGTTTGGAAGGA-ATAGATGCCCAAAAAGCCACGGGCATGGCA 363
Query 353 ATATACAAGGATGGAAAACACGCGACATTGC--CTTTTCCAGAT-G---ACAAGAGTTTT 406
| || ||||| |||||| | || | | || ||||||| | | | |||| | ||||
Sbjct 364 GTTTATAAGGACGGAAAAGAAGC-A-GTCGCATCTTTTCC-GGTGGACAACAACAATTTT 420
Query 407 CCTCATGAGCCAGT-AGGTAGACTC-TTACGTAATGGTCGGCTGGTACAACGTTTACGCC 464
||| ||| || | | | || || || | ||||| || | || |||||| | ||||
Sbjct 421 CCTTTTGATCC-TTCTGCTCGA-TCTTTTCACAATGGCCGATTCGTCCAACGTCTGCGCC 478
Query 465 AAAAAGCAGCTTCTCTTAGCAATGTTCAATTAGAAGAAGGAACAGTGAAGTCTTTAATTG 524
||||||| |||||||| |||||| | | ||||||||||| |||| |||||| || |
Sbjct 479 AAAAAGCTTCTTCTCTTCCCAATGTGCGGCTCGAAGAAGGAACGGTGAGGTCTTTGATAG 538
Query 525 AAGAAGAAGGAGTGGTCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAATAACGG 584
||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 539 AAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAG 598
Query 585 CCTTTGCACCTCTTACTGTCGTATGCGATGGTTGTTATTCGAACCTTCGTCGGTCACTCG 644
||||||||||||| ||||| |||||||| ||||| || || |||||||||||||| ||
Sbjct 599 CCTTTGCACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTA 658
Query 645 TGGATAATACTGAGGAAGTCCTCTCGTAC-ATGGTGGGTTACGTCACGAAGAA--TAGCC 701
|| || | || ||| || || || ||| | | ||| |||| || | ||||| | | |
Sbjct 659 ACGACAACAATGCGGAGGTTCTGTCATACCAAGTTGG-TTACATCTC-AAGAAACT-GTC 715
Query 702 -GACTTGAAGATCCCCATA-GTCTACATTTGATATTTTCTAAACC-T--TTGGTTTGTGT 756
| |||||||| || | | || || | |||||| | |||||||| | || |||
Sbjct 716 AG-CTTGAAGAACCGGAAAAGT-TAAAATTGATAATGTCTAAACCCTCCTTCACCA-TGT 772
Query 757 TATATATCAAATAACCAGTGAT-GAAGTTCGTTGTGTTGCCGAAG-TT--CCCGCTGATA 812
| ||| ||||| | ||| | || |||||||||||| || | || ||| | | |
Sbjct 773 TGTAT--CAAATCAGCAGC-ACCGACGTTCGTTGTGTTTTTGA-GCTTTTCCC-CA-ACA 826
Query 813 GTATTCCTTCTATATCGAATGGTGAAATG-TCTACCTTCCTCAAGAA-ATCAATGGCTCC 870
||||||||||| || |||||||||||| | || ||| | ||||| || | || ||||
Sbjct 827 ACATTCCTTCTATTTCAAATGGTGAAATGGT-TAATTTCGTGAAGAACATTATTG-CTCC 884
Query 871 TCAGATACCTGAAACTGGAAATCTTCGGGAGATATTTTTGAAAGGCATAGAGGAAGGATT 930
|||| ||||| || || || || | |||||||||||||| || || ||||||
Sbjct 885 TCAGGTACCTTCAA----AACTC--CGTAAAATATTTTTGAAAGGGATCGATGAAGGAGC 938
Query 931 ACCAGAGATAAAA-TCAA-C-AGCGACGAAAAGTATGTCATCGAGATTGTGTGATAA-AA 986
|| | | ||||| ||| | | | | ||||| | |||| | | ||| | ||||| ||
Sbjct 939 AC-ATA--TAAAAGTCATGCCAACAAAGAAAA-T--GTCAGCTACTTTGAGCGATAAGAA 992
Query 987 GAGGAGTGATTGTGTTGGGAGATGCATTCAATATGCGTCATCCTAT-AATCGCGTCAGGA 1045
|||||||||||| ||||||||||||||||| ||||||||||| | |||||| || |||
Sbjct 993 -AGGAGTGATTGTATTGGGAGATGCATTCAACATGCGTCATCC-AGCAATCGCATCTGGA 1050
Query 1046 ATGATGGTTGCACTCTCGGACATT-TGCATTCTACGCAATCTTCTCAAACCATT--GCCT 1102
||||||||| | | || |||||| | |||||||||| |||||| | ||||| ||
Sbjct 1051 ATGATGGTTTTATTATCTGACATTCT-CATTCTACGCCGCCTTCTCCAGCCATTAAGC-- 1107
Query 1103 AACCTCAGCAAT--ACTAAGAAAGTCTCTGATCTTGTCAAGTCCTTTTAC-ATCATCCGC 1159
|||||| || || || || |||||| | || || ||||||||||||| || ||||||
Sbjct 1108 AACCTCGGCGATGCAC-AA-AAAGTCACAGAAGTTATCAAGTCCTTTTATGAT-ATCCGC 1164
Query 1160 AAGCCAATGTCAGCGACCGTGAACACGCTCGCGAGTAT-C-TTTTCACAAGTGCTTGTTG 1217
||||||||||||||||| || ||||| | | || || | ||||| |||||||| |||
Sbjct 1165 AAGCCAATGTCAGCGACAGTTAACACATTAG-GAA-ATGCATTTTCTCAAGTGCTAATTG 1222
Query 1218 C-TACAACAGACGAAGCAAGAGAGGGAATGCGACAAGGCTGCT-TCAATTACCTA-GCTC 1274
| | |||| ||| |||||| ||| | |||| |||| || |||| | | |||||| | |
Sbjct 1223 CAT-CAACGGACAAAGCAAAAGAAGCAATGAGACAGGGTTGCTATGA-TTACCTCTG-TA 1279
Query 1275 GTGGAGATTTTAAAACA--AGGGGATTGATGACTATTCTCGGAGGCATGAACCCTCACCC 1332
|||| | |||| || |||| || |||| || | ||||| ||||||||||||| ||
Sbjct 1280 GTGGTGGTTTTCGCACGTCAGGG-AT-GATGGCTCTGCTCGGCGGCATGAACCCTCGTCC 1337
Query 1333 --TCT-TACTCTAGTCCT-TCATCT-TGTAGCCATCACCCT-TACGTCCATGGGCCACTT 1386
||| | ||| | || | |||||| ||| || ||||| || | | ||||| ||||| ||
Sbjct 1338 GATCTCT-CTC-A-TC-TATCATCTATGT-GCTATCACTCTATCC-TCCATTGGCCATTT 1391
Query 1387 GCTCTCTCCGTTTCCTTCGCCTCGTCG-CTTTTGGCATAGCCTCAGAATTCTTGCCTGGG 1445
||||||||| ||||| || || | | | | | |||||||||||| || || ||| | |
Sbjct 1392 GCTCTCTCCATTTCCCTCTCCCCTT-GACATCTGGCATAGCCTCCGACTTTTTGGTTTAG 1450
Query 1446 CTTTGCAAATGTTGGGTGCACATTTAGTGGATGAAGGA-TTCAAGG-AAATGTTGATTCC 1503
|| | ||||||||| | | ||| || || ||||||| || | | |||||||| ||||
Sbjct 1451 CTACGAAAATGTTGGTTCCCCATCTAAAGGCTGAAGGAGTT-A-GCCAAATGTTGTTTCC 1508
Query 1504 AA-CAAACGCAGCTGCTTATCG-AAGGAA-CTATATCGCCACAAC 1545
| ||| |||||| || ||||| || || |||||| ||| ||||
Sbjct 1509 AGTCAA-CGCAGCCGCGTATCGTAA--AAGCTATATGGCCGCAAC 1550
> Ahg941951 jgi|Araly1|941951|scaffold_602495.1
Length=1591
Score = 444 bits (240), Expect = 1e-123
Identities = 1153/1579 (73%), Gaps = 122/1579 (8%)
Strand=Plus/Plus
Query 20 TTATGGACGCTTCTCGCCTTTGTTCTGACATGGATGGTTTTTC-ACCTCATCAAGATGAA 78
||||||||| | |||||||| | ||||| |||| || | ||| || | | ||| | |||
Sbjct 42 TTATGGACGGTACTCGCCTTCGCGCTGACCTGGACGG-TGTTCTACGTTACCAACAGGAA 100
Query 79 GAAGGCGGCAACCGGAGATTTAGAGGCCGAGGCAG-A-AGCA-AGAAGAGATGGTGCAAC 135
||| ||| | |||| | || | || | ||||| | || | |||||| | ||||| |
Sbjct 101 GAAAAAGGCGA-CGGA-A-TTGGCGGATGCGGCAGCAGAGGAGAGAAGAAACGGTGCTTC 157
Query 136 GGATGTCATCATTGTTGGGGCGGGTGTTGCAGGCGCTTCTCTTGCTTATGCT-TTAGCTA 194
|| |||||||| || ||||| ||||| | ||| | ||||||| |||||| || ||||
Sbjct 158 TGACGTCATCATCGTCGGGGCTGGTGTCGGTGGCTCGGCTCTTGCATATGCTCTT-GCTA 216
Query 195 AGGATGGACGACGAGTACATGTGATAGAGAGGGACTTAAAAGAGCCACAAAGATTCATGG 254
|||| ||||| |||||||||||||| ||||||||| | | ||| ||| | ||| | ||||
Sbjct 217 AGGACGGACGTCGAGTACATGTGATTGAGAGGGACATGAGAGAACCAGAGAGAATGATGG 276
Query 255 GAGAGCTGATGCAAG-CGGGAGGTCG-CTTCATG-TTAGCCCAGCTTGGCC-TCGAAGAT 310
| ||| | |||| || | ||||| || | ||||| || | ||||||||| || |||||
Sbjct 277 GTGAGTTTATGC-AGCCAGGAGGACGAC-TCATGCTT-TCTAAGCTTGGCCTTC-AAGAT 332
Query 311 TGTTTGGA-GGACATAGACGCACAAGAAGCGAAGTCCTTGGCAATATACAAGGATGGAAA 369
||| |||| || ||||| || ||| |||| | | | ||||| | || ||||| || ||
Sbjct 333 TGTCTGGATGG-TATAGATGCCCAAAAAGCCACGGGCATGGCAGTTTATAAGGACGGCAA 391
Query 370 ACACGCGACATTGC--CTTTTCCAGAT-GAC---AAGAGTTTTCCTCATGAGCCAGT-AG 422
| | || | | || ||||||| | | ||| || | ||||||| | || || | |
Sbjct 392 AGAAGC-A-GTCGCATCTTTTCC-GGTGGACAATAACAATTTTCCTTACGATCC-TTCTG 447
Query 423 GTAGACTC-TTACGTAATGGTCGGCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTT 481
| || || || | ||||| || | || ||| || | |||||||| || ||||||||
Sbjct 448 CTCGA-TCTTTTCACAATGGCCGATTCGTCCAAAGTCTGCGCCAAAAGGCTTCTTCTCTT 506
Query 482 AGC-AATGTTCAATTAGAAGAAGGAACAGTGAAGTCTTTAATTGAAGAAGAAGGAGTGGT 540
| | ||| | | ||||||||||| |||||||| ||||| |||||| |||||||| |
Sbjct 507 -TCTAGTGTGCGCCTGGAAGAAGGAACGGTGAAGTCGTTAATAGAAGAAAAAGGAGTGAT 565
Query 541 CAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAATAACGGCCTTTGCACCTCTTAC 600
||||||||||||||||||||| | ||||||||||||| ||| || || || ||||| ||
Sbjct 566 CAAAGGAGTGACATACAAAAACAAAGCAGGCGAAGAAACAACAGCATTGGCGCCTCTCAC 625
Query 601 TGTCGTATGCGATGGTTGTTATTCGAACCTTCGTCGGTCACTCGTGGATAATACTGAGGA 660
||| |||||||| ||||| || || |||||||||||||| || ||||| | || |||
Sbjct 626 TGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTAAACGATAACAATGCGGA 685
Query 661 AGTCCTCTCGTA-CATGGTGGGTTACGTCACGAAGAATAGCCGACTTGAAGATCCCCATA 719
|| | || || || || |||||| || |||||||| | || ||||| |||||| | |
Sbjct 686 GGTTTTGTCTTACCA-AGTTGGTTACATCTCGAAGAATTGTCGGCTTGACGATCCCGAAA 744
Query 720 GTCTACATTTGATATTTTCTAAA-CCT-TTGGTTTGTGTTATATATCAAATAACCAGTGA 777
|| ||||||||| | |||||| ||| | | || | | || ||| ||| ||| |
Sbjct 745 ACCTTCATTTGATAATGTCTAAACCCTCCTCCATCATG-T-TGTACCAACTAAGCAG-CA 801
Query 778 -TGAAGTTCGTTGT-G--TTGCCGAAGTTCCCGCTGATAGTATTCCTTCTATAT-CGAAT 832
||| ||||||||| | ||| | ||||| | || | | |||||||||| | | ||
Sbjct 802 CTGATGTTCGTTGTGGTTTTG-AGCTTTTCCC-C-GACAATTTTCCTTCTAT-TGCAAAA 857
Query 833 GGTGAAATGTCTACCTTCCTC-AAGAA-ATCAATGGCTCCTCAGATACCTGAAACTGGAA 890
||||||||| ||| ||| | | ||||| | | | ||||||||| ||||| | ||
Sbjct 858 GGTGAAATGGCTA-CTTTCGCGAAGAACA-CTCTAGCTCCTCAGGTACCT----C--CAA 909
Query 891 ATCTTCGGGAGATATTTTTGAAAGG-CATAGAGGAAGGATTACCAGAGATAAAATCAACA 949
| ||||| | ||||| |||||||| | |||| | ||| | || | |||||| |
Sbjct 910 AACTTCGCAAAATATTCTTGAAAGGTC-TAGATG-AGG--GAGCACACATAAAAGC-GGT 964
Query 950 GCGACG-AAA-AGTATGTCATCGAGATTGTGTGATAAAAGAGGAGTGATTGTGTTGGGAG 1007
| | | ||| | ||| || | | || | |||||| ||||||||||||||||||||
Sbjct 965 TCCA-GCAAAGCGCATGACAGCTACTTTAAGCAATAAAAAAGGAGTGATTGTGTTGGGAG 1023
Query 1008 ATGCATTCAATATGCGTCATCCTATAA-TCGCGTCAGGAATGATGGTTGCACTCTCGGAC 1066
|||||||||| ||||||||||| || | ||||| | |||||||||||| | | || ||
Sbjct 1024 ATGCATTCAACATGCGTCATCC-ATCAGTCGCGGCTGGAATGATGGTTTTATTGTCTGAT 1082
Query 1067 ATT-TGCATTCTACG-CAATCTTCTCAAACCATT--GCCTAACCTCAGCAATACTAAGAA 1122
||| | ||||||||| | ||||||| | ||| | || |||||| | || | || ||
Sbjct 1083 ATTCT-CATTCTACGTCG-TCTTCTCCAGCCACTAAGC--AACCTCGGTGATGCAAACAA 1138
Query 1123 AGTCTCTGA--TCTTGTCAAGTCCTTTTACATCATCCGCAAGCCAATGTCAGCGACCGTG 1180
|||||| || || | | ||||||||||| | |||||||||||||||||||||||| |||
Sbjct 1139 AGTCTCAGAAGTCAT-T-AAGTCCTTTTATAGCATCCGCAAGCCAATGTCAGCGACGGTG 1196
Query 1181 AACACGCTCGCGAG-TATC-TTTTCACAAGTGCTTGTTGC-TACAACAGACGAAGCAAGA 1237
||||| | | || | | ||||| |||||||| |||| | |||| |||||||||| |
Sbjct 1197 AACACATTAG-GAACTG-CATTTTCTCAAGTGCTAATTGCAT-CAACGGACGAAGCAAAA 1253
Query 1238 GAGGGAATGCGACAAGGCTGCT-TCAATTACCTA-GCTCGTGGAGATTTTAAAACA--AG 1293
|| | |||| |||| || |||| | | |||||| | | |||| | |||| || ||
Sbjct 1254 GAAGCAATGAGACAGGGTTGCTATGA-TTACCTTTG-TAGTGGCGGTTTTCGCACGTCAG 1311
Query 1294 GGGATTGATGACTATTCTCGGAGGCATGAACCCTCACCC--TCT-TACTCTAGTCCTTCA 1350
|| || |||| || | || || |||||||| |||| || ||| | ||| | | | ||
Sbjct 1312 GG-AT-GATGGCTCTACTAGGTGGCATGAATCCTCGTCCGATCTCT-CTC-ATTTAT-CA 1366
Query 1351 TCT-TGTAGCCATCACCCTTACGT-CCATGGGCCA-CTTGCTCTCTCCGTTTCCTTCGCC 1407
||| || || ||||| || || | |||| ||||| ||| |||||||| |||||||| ||
Sbjct 1367 TCTCTGC-GCTATCACACT-ACATTCCATTGGCCATCTT-CTCTCTCCATTTCCTTCCCC 1423
Query 1408 TCGT-CGCTTTTGGCATAGCCTCAGAATTCTTGCCTGGGCTTTGCAAATGTTGGGTGCAC 1466
| | ||| |||||||||||||||| || ||| | |||||| ||||||||| | | |
Sbjct 1424 -CATTCGCATTTGGCATAGCCTCAGGCTTTTTGGTTTAGCTTTGAAAATGTTGGTTCCCC 1482
Query 1467 ATTT-AGTGGATGAAGGA-TTCAAGGAA-ATGTTGATTCCAACAAACGCAGCTGCTTATC 1523
|| | | || ||| ||| || | | | |||||| |||| |||||||||| || ||||
Sbjct 1483 ATCTCAA-GGCTGAGGGAGTT-A-GCCAGATGTTGTTTCCTGCAAACGCAGCCGCATATC 1539
Query 1524 G-AAGGAA-CTATATCGCC 1540
| || || |||||| |||
Sbjct 1540 GCAA--AAGCTATATGGCC 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5