BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24150.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894303 jgi|Araly1|894303|Al_scaffold_0006_2299 2353 0.0
Ahg894306 jgi|Araly1|894306|Al_scaffold_0006_2302 2025 0.0
Ahg941951 jgi|Araly1|941951|scaffold_602495.1 1808 0.0
> Ahg894303 jgi|Araly1|894303|Al_scaffold_0006_2299
Length=1560
Score = 2353 bits (1274), Expect = 0.0
Identities = 1470/1564 (94%), Gaps = 15/1564 (1%)
Strand=Plus/Plus
Query 33 GGATATGGCCTTTACGA-ACGTTTGCCTATGGACGCTACTCGCCTTCATGCTGACTTGGA 91
|||| |||| ||||| | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 3 GGATGTGGCTTTTAC-ACACGTTTGTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGA 61
Query 92 CAG-TGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTGGCGGATGCGGTGGTT 150
| | ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 62 C-GCTGTTCTACGACACAAACAGGGGGAAGAAGGCGACGAAGTTGGCGGATGCGGTGGTG 120
Query 151 GAAGAGCGAGAAGA-CG-G-TGCTACTGACGTTATCATCGTTGGGGCTGGAGTAGGCGGC 207
|| |||||| |||| | | |||| |||||||||||||||||||||||||||| ||||||
Sbjct 121 GACGAGCGAAAAGATGGTGCTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGC 180
Query 208 TCGGCTCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGTAATAGAGAGGGAC 267
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 181 TCGGCTCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTACATATAATAGAGAGGGAC 240
Query 268 CTGAGAGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGGACGACTCATGCTC 327
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 241 ATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGAGGACGATTCATGCTC 300
Query 328 TCTAAGCTTGGTCTTGAAGATTGTTTGGAGGGAATAGATGCCCAAAAAGCCACGGGCATG 387
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TCTAAGCTTGGCCTTCAAGATTGTTTGGAAGGAATAGATGCCCAAAAAGCCACGGGCATG 360
Query 388 ACAGTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGACAACAACAATTTT 447
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GCAGTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCGGTGGACAACAACAATTTT 420
Query 448 CCTTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCAACGAT-TGCGGCA 506
|||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 421 CCTTTTGATCCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAACG-TCTGCGCCA 479
Query 507 AAAGGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTGATAGA 566
||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct 480 AAAAGCTTCTTCTCTTCCCAATGTGCGGCTCGAAGAAGGAACGGTGAGGTCTTTGATAGA 539
Query 567 AGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGC 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGC 599
Query 627 CTTGGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGCCGGTCTCTTAA 686
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 CTTTGCACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAA 659
Query 687 TGACAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAAAG-AACTGTCAGC 745
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 660 CGACAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTACATCTC-AAGAAACTGTCAGC 718
Query 746 TTGAAGAACCCGAAAAGTTAAAGTTGATAATGTCTAAACCCTCCTTCACCATGTTGTATC 805
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 TTGAAGAACCGGAAAAGTTAAAATTGATAATGTCTAAACCCTCCTTCACCATGTTGTATC 778
Query 806 AAATCAGCAGCACCGACGTTCGTTGTGTTTTTGAAG-TTCTCCCCAACAACATTCCTTCT 864
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 779 AAATCAGCAGCACCGACGTTCGTTGTGTTTTTG-AGCTTTTCCCCAACAACATTCCTTCT 837
Query 865 ATTTCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCCTCAGGTACCTTTA 924
||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
Sbjct 838 ATTTCAAATGGTGAAATGGTTAATTTCGTGAAGAACATTATTGCTCCTCAGGTACCTTCA 897
Query 925 AAACTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATATAAAAGCCATGCCA 984
|||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 898 AAACTCCGTAAAATATTTTTGAAAGGGATCGATGAAGGAGCACATATAAAAGTCATGCCA 957
Query 985 ACAAAGAAGATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTTTATTGGGAGATGCA 1044
|||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 958 ACAAAGAAAATGTCAGCTACTTTGAGCGATAAGAAAGGAGTGATTGTATTGGGAGATGCA 1017
Query 1045 TTCAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTC 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTCAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTC 1077
Query 1105 ATTCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGCAAAAAATCTCACAA 1164
||||||||||| ||||||||||||||||||||||| ||| |||| |||||| || || ||
Sbjct 1078 ATTCTACGCCGCCTTCTCCAGCCATTAAGCAACCTCGGCGATGCACAAAAAGTCACAGAA 1137
Query 1165 GTTATCAAGTCCTTTTATGATATCCGCAAGCCAATGTCAGCGACAGTTAACACGTTAGGA 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 GTTATCAAGTCCTTTTATGATATCCGCAAGCCAATGTCAGCGACAGTTAACACATTAGGA 1197
Query 1225 AATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAAAAGAGGCAATGAGACAA 1284
|||||||| |||||||||||| ||||||| |||||| |||||||||| |||||||||||
Sbjct 1198 AATGCATTTTCTCAAGTGCTAATTGCATCAACGGACAAAGCAAAAGAAGCAATGAGACAG 1257
Query 1285 GGTTGCTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTTTGCTA 1344
||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 1258 GGTTGCTATGATTACCTCTGTAGTGGTGGTTTTCGCACGTCAGGGATGATGGCTCTGCTC 1317
Query 1345 GGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTATCC 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTATCC 1377
Query 1405 TCCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCCTTCG-CATTTGGCATAGCCTTCG 1463
|||||||||||| | |||||||||||||||||||||||| | ||| ||||||||||| ||
Sbjct 1378 TCCATTGGCCATTTGCTCTCTCCATTTCCCTCTCCCCTT-GACATCTGGCATAGCCTCCG 1436
Query 1464 ACTTTTTGGTTTGGCTATGAAAATGTTGGTTCCCCATCTCAAGGCTGAAGGAGTTAGCCA 1523
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1437 ACTTTTTGGTTTAGCTACGAAAATGTTGGTTCCCCATCTAAAGGCTGAAGGAGTTAGCCA 1496
Query 1524 AATGTTGTTTCCAGTCAACGCCGCCGCGTATAGCAAAAGCTATATGGCTGCAACGGCTCT 1583
||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||
Sbjct 1497 AATGTTGTTTCCAGTCAACGCAGCCGCGTATCGTAAAAGCTATATGGCCGCAACGGCTCT 1556
Query 1584 CTAA 1587
||||
Sbjct 1557 CTAA 1560
> Ahg894306 jgi|Araly1|894306|Al_scaffold_0006_2302
Length=1557
Score = 2025 bits (1096), Expect = 0.0
Identities = 1414/1567 (90%), Gaps = 24/1567 (2%)
Strand=Plus/Plus
Query 33 GGATATGGCCTTTACGAACGTTTGCCTATGGACGCTACTCGCCTTCATGCTGACTTGGAC 92
|||||| || |||||| |||||| |||||||||||||||||||| |||||||||||||
Sbjct 3 GGATATCGCTTTTACGCACGTTTTTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGAC 62
Query 93 AGTGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTGGCGGATGCGGTGGTTGA 152
||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 63 GGTGTTCTACGTTACAAACAGGGGGAAGAAGGCAACGAAGTTGGCGGATGCGGTGGTGGA 122
Query 153 AGAGCGAGAAGACGGTGCTACTGACGTTATCATCGTTGGGGCTGGAGTAGGCGGCTCGGC 212
||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 123 AGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTCGGC 182
Query 213 TCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGTAATAGAGAGGGACCTGAG 272
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||
Sbjct 183 TCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACATGAG 242
Query 273 AGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGGACGACTCATGCTCTCTAA 332
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 243 AGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTCTAA 302
Query 333 GCTTGGTCTTGAAGATTGTTTGGAGGGA-ATAGATGCCCAAAAAGCCACGGGCAT-GACA 390
|||||| ||| ||||||||||||| || |||||||| || |||||||||||| | | ||
Sbjct 303 GCTTGGCCTTCAAGATTGTTTGGA-AGACATAGATGCACAGAAAGCCACGGGCTTCG-CA 360
Query 391 GTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGACAACAACAA-TTTTCC 449
||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||| |
Sbjct 361 GTTTATAAGGATGGAAAAGAAGCAGTCGCACCTTTTCCAGTGGAAAACAACAACTTTT-C 419
Query 450 TTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCAACGATTGCGGCAAAA 509
|| ||| ||||| |||||||||||||||||||||||||| ||||| | |||||| | |||
Sbjct 420 TTATGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTTGTCCAGCAATTGCGTCGAAA 479
Query 510 GGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTGATAGAAGA 569
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 480 GGCTTCTTCTCTTCCCAATGTGCGCCTCGAAGAAGGAACGGTGAAGTCTTTAATAGAAGA 539
Query 570 AAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGCCTT 629
|||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||
Sbjct 540 AAAAGGAGTGATCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAAGAGCCTT 599
Query 630 GGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGCCGGTCTCTTAATGA 689
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 GGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGTAGGTCTCTTAATGA 659
Query 690 CAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAAAGAACTGTCAG-CTTG 748
||||||||||||| ||||||| |||| ||||||||| ||||| ||||| |||| | ||||
Sbjct 660 CAACAATGCGGAGATTCTGTCGTACCTAGTTGGTTTCATCTCCAAGAATTGTC-GACTTG 718
Query 749 AAGAACCCGAAAAGTTAAAGTTGATAATGTCTAAACCCTCCTTCACCATGTTGTATCAAA 808
||||||||||||| ||| | |||||| |||||||||| || ||||||||| | |||||||
Sbjct 719 AAGAACCCGAAAACTTACATTTGATATTGTCTAAACCTTCTTTCACCATGGTATATCAAA 778
Query 809 TCAGCAGCACCGACGTTCGTTGTGTTTTTGAAGTTCTCCCC-AACAACATTCCTTCTATT 867
| |||||||| ||||||||||||| |||||| ||||||||| || || |||||||||||
Sbjct 779 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAA-AATTTTCCTTCTATT 837
Query 868 TCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCCTCAGGTACCTTTAAAA 927
|||||||||||||| |||||||| ||||||| ||||| | ||||||||||||| ||||
Sbjct 838 GCAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAA 897
Query 928 CTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATATAAAAGCCATGCCAACA 987
||||||||||||||||||||||| || |||| |||| ||| ||||||| | ||||| ||
Sbjct 898 CTCCGCAAAATATTTTTGAAAGGAATAAATGAGGGAGCACAGATAAAAGTCGTGCCAGCA 957
Query 988 AAGAAG-ATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTTTATTGGGAGATGCATT 1046
||| | ||| |||||| ||| ||| |||||||||| |||||| ||||||||||||||||
Sbjct 958 AAG-CGCATGTCAGCTAGTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATT 1016
Query 1047 CAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTCAT 1106
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1017 CAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTACTGTCTGACATTCTCAT 1076
Query 1107 TCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGCAAAAAA-TCTCACAAG 1165
||||||||||||||||||||||||||||||||| ||| |||| || ||| ||||| |||
Sbjct 1077 TCTACGCCGTCTTCTCCAGCCATTAAGCAACCTCGGCGATGCT-AACAAAGTCTCAGAAG 1135
Query 1166 TTATCAAGTCCTTTTAT-GATATCCGCAAGCCAATGTCAGCGACAGTTAACACGTTAGGA 1224
||||||| || |||||| | ||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1136 TTATCAATTCTTTTTATAG-TATTCGCAAGCCAATGTCAGCGACGGTTAACACATTAGGA 1194
Query 1225 AATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAAAAGAGGCAATGAGACAA 1284
|||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 1195 AATGCATTTTCTCAAGTGCTAATTGGATCAACGGACGAAGCAAAAGAGGCAATGAGACAG 1254
Query 1285 GGT-TGCTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTTTGCT 1343
||| | |||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1255 GGTGT-CTATGATTACCTTTGTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTCTGCT 1313
Query 1344 AGGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTATC 1403
||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||| ||||
Sbjct 1314 CGGCGGCATGAATCCTCGTCCGCTCTCTCTTATCTATCATCTCTGTGCTATCACTATATC 1373
Query 1404 CTCCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTTCG 1463
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1374 CTCTATTGGCCATCTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCT-CA 1432
Query 1464 A-CTTTTTGGTTTGGC-TATGAAAATGTTGGTTCCCCATCTCAAGGCTGAAGGAGTTAGC 1521
| |||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1433 AGCTTTTTGGTTTGGCCT-TGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGC 1491
Query 1522 CAAATGTTGTTTCCAGTCAAC-GCCGCCGCGTATAGCAAAAGCTATATGGCTGCAACGGC 1580
|||||||||||||||| ||| || ||||||||| |||||||||||||||| ||||| ||
Sbjct 1492 CAAATGTTGTTTCCAG-CAAATGCAGCCGCGTATCGCAAAAGCTATATGGCCGCAACCGC 1550
Query 1581 TCTCTAA 1587
|||||||
Sbjct 1551 TCTCTAA 1557
> Ahg941951 jgi|Araly1|941951|scaffold_602495.1
Length=1591
Score = 1808 bits (979), Expect = 0.0
Identities = 1399/1602 (87%), Gaps = 28/1602 (2%)
Strand=Plus/Plus
Query 18 CTAGCTT-ATAGA-TAAGGATATGGCCTTTACGAACGTTTGCCTATGGACGCTACTCGCC 75
|||| || ||||| | |||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 1 CTAG-TTAATAGATTTGGGATATGGCCTTTACGCACGTTTGTTTATGGACGGTACTCGCC 59
Query 76 TTCATGCTGACTTGGACAGTGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTG 135
||| |||||| ||||| ||||||||||| || |||||| ||| ||||||||| | |||
Sbjct 60 TTCGCGCTGACCTGGACGGTGTTCTACGTTACCAACAGGAAGAAAAAGGCGACGGAATTG 119
Query 136 GCGGATGCGGTGGTTGAAGAGCG-AGAAGACGGTGCTACTGACGTTATCATCGTTGGGGC 194
|||||||||| | || ||| | |||| |||||||| ||||||| |||||||| |||||
Sbjct 120 GCGGATGCGGCAGCAGAGGAGAGAAGAA-ACGGTGCTTCTGACGTCATCATCGTCGGGGC 178
Query 195 TGGAGTAGGCGGCTCGGCTCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGT 254
||| || || ||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 179 TGGTGTCGGTGGCTCGGCTCTTGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGT 238
Query 255 AATAGAGAGGGACCTGAGAGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGG 314
|| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 239 GATTGAGAGGGACATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGG 298
Query 315 ACGACTCATGCTCTCTAAGCTTGGTCTTGAAGATTGTTTGGAGGGAATAGATGCCCAAAA 374
|||||||||||| ||||||||||| ||| |||||||| |||| || ||||||||||||||
Sbjct 299 ACGACTCATGCTTTCTAAGCTTGGCCTTCAAGATTGTCTGGATGGTATAGATGCCCAAAA 358
Query 375 AGCCACGGGCATGACAGTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGA 434
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 359 AGCCACGGGCATGGCAGTTTATAAGGACGGCAAAGAAGCAGTCGCATCTTTTCCGGTGGA 418
Query 435 CAACAACAATTTTCCTTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCA 494
||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 CAATAACAATTTTCCTTACGATCCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCA 478
Query 495 ACGAT-TGCGGCAAAAGGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGA 553
| | | |||| |||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 479 AAG-TCTGCGCCAAAAGGCTTCTTCTCTTTCTAGTGTGCGCCTGGAAGAAGGAACGGTGA 537
Query 554 AGTCTTTGATAGAAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCG 613
|||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 538 AGTCGTTAATAGAAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAACAAAGCAGGCG 597
Query 614 AAGAAACAACAGCCTTGGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTC 673
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 598 AAGAAACAACAGCATTGGCGCCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTC 657
Query 674 GCCGGTCTCTTAATGACAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAA 733
| |||||||| || || ||||||||||||||| |||| ||||||||||||| ||||| |
Sbjct 658 GTCGGTCTCTAAACGATAACAATGCGGAGGTTTTGTCTTACCAAGTTGGTTACATCTCGA 717
Query 734 AGAACTGTCAGCTTGAAGAACCCGAAAAG-TTAAAGTTGATAATGTCTAAACCCTCCTTC 792
|||| |||| |||||| || |||||||| || | |||||||||||||||||||||| |
Sbjct 718 AGAATTGTCGGCTTGACGATCCCGAAAACCTTCAT-TTGATAATGTCTAAACCCTCCTCC 776
Query 793 ACCATGTTGTATCAAATCAGCAGCACCGACGTTCGTTGTGTTTTTGAAG-TTCTCCCCAA 851
| ||||||||| ||| | |||||||| || |||||||||| |||||| | || ||||| |
Sbjct 777 ATCATGTTGTACCAACTAAGCAGCACTGATGTTCGTTGTGGTTTTGA-GCTTTTCCCCGA 835
Query 852 CAACATTCCTTCTATTTCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCC 911
||| ||||||||||| |||| ||||||||||||||||||| |||||||||| | |||||
Sbjct 836 CAATTTTCCTTCTATTGCAAAAGGTGAAATGGCTACTTTCGCGAAGAACACTCTAGCTCC 895
Query 912 TCAGGTACCTTTAAAACTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATAT 971
|||||||||| |||||| ||||||||||| |||||||| | ||||| |||| ||| ||
Sbjct 896 TCAGGTACCTCCAAAACTTCGCAAAATATTCTTGAAAGGTCTAGATGAGGGAGCACACAT 955
Query 972 AAAAGCCATGCCAACAAAGAAG-ATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTT 1030
|||||| | ||| ||||| | |||||||||||||| ||| | || ||||||||||||
Sbjct 956 AAAAGCGGTTCCAGCAAAGC-GCATGACAGCTACTTTAAGCAATAAAAAAGGAGTGATTG 1014
Query 1031 TATTGGGAGATGCATTCAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTAT 1090
| |||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 1015 TGTTGGGAGATGCATTCAACATGCGTCATCCATCAGTCGCGGCTGGAATGATGGTTTTAT 1074
Query 1091 TATCTGACATTCTCATTCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGC 1150
| ||||| |||||||||||||| ||||||||||||||| |||||||||| || ||||
Sbjct 1075 TGTCTGATATTCTCATTCTACGTCGTCTTCTCCAGCCACTAAGCAACCTCGGTGATGC-- 1132
Query 1151 AAA-AAA-TCTCACAAGTTATCAAGTCCTTTTAT-GATATCCGCAAGCCAATGTCAGCGA 1207
||| ||| ||||| |||| || |||||||||||| | ||||||||||||||||||||||
Sbjct 1133 AAACAAAGTCTCAGAAGTCATTAAGTCCTTTTATAGC-ATCCGCAAGCCAATGTCAGCGA 1191
Query 1208 CAGTTAACACGTTAGGAAATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAA 1267
| || ||||| ||||||| |||||| |||||||||||| ||||||| |||||||||||||
Sbjct 1192 CGGTGAACACATTAGGAACTGCATTTTCTCAAGTGCTAATTGCATCAACGGACGAAGCAA 1251
Query 1268 AAGAGGCAATGAGACAAGGTTGCTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAG 1327
|||| ||||||||||| ||||||||||||||||| | |||||| || |||||||||||||
Sbjct 1252 AAGAAGCAATGAGACAGGGTTGCTATGATTACCTTTGTAGTGGCGGTTTTCGCACGTCAG 1311
Query 1328 GGATGATGGCTTTGCTAGGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTAT 1387
||||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||| |
Sbjct 1312 GGATGATGGCTCTACTAGGTGGCATGAATCCTCGTCCGATCTCTCTCATTTATCATCTCT 1371
Query 1388 GTGCTATCACTCTATCCT-CCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCC-TTCG 1445
| |||||||| ||| | | ||||||||||||| |||||||||||||| || |||| ||||
Sbjct 1372 GCGCTATCACACTA-CATTCCATTGGCCATCTTCTCTCTCCATTTCCTTC-CCCCATTCG 1429
Query 1446 CATTTGGCATAGCCTTC-GACTTTTTGGTTTGGCTATGAAAATGTTGGTTCCCCATCTCA 1504
||||||||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1430 CATTTGGCATAGCCT-CAGGCTTTTTGGTTTAGCTTTGAAAATGTTGGTTCCCCATCTCA 1488
Query 1505 AGGCTGAAGGAGTTAGCCAAATGTTGTTTCCAGTCAA-CGCCGCCGCGTATAGCAAAAGC 1563
||||||| ||||||||||| ||||||||||| | ||| ||| ||||| ||| ||||||||
Sbjct 1489 AGGCTGAGGGAGTTAGCCAGATGTTGTTTCCTG-CAAACGCAGCCGCATATCGCAAAAGC 1547
Query 1564 TATATGGCTGCAACGGCTCTCTAAAACACTGGTGCTTTAAAC 1605
|||||||| || | | | | |||| || || |||| |||||
Sbjct 1548 TATATGGCCGCGTCTGTTTTTTAAA-CATTGATGCTCTAAAC 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5