BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24165.1
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489276 jgi|Araly1|489276|fgenesh2_kg.6__2410__AT5G24165.1 695 0.0
> Ahg489276 jgi|Araly1|489276|fgenesh2_kg.6__2410__AT5G24165.1
Length=462
Score = 695 bits (376), Expect = 0.0
Identities = 437/466 (94%), Gaps = 6/466 (1%)
Strand=Plus/Plus
Query 16 AGAAAGAAAACAGAGCAATTACTTGAAGAATCCATAGGAAGCTGAAGATG-AGAAGAATT 74
|||||||||||| |||||||| || ||||||||| ||||||||||||||| || ||||||
Sbjct 1 AGAAAGAAAACAAAGCAATTAATTCAAGAATCCA-AGGAAGCTGAAGATGAAG-AGAATT 58
Query 75 CCTCGTATCAAATTTCCTCAGAGACATTCTATCTCATCTGGTTCTGGACCGGCGCCGGGA 134
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||
Sbjct 59 CCTCGTATCAAATTTCCTCAAAGACATTCTATTTCATCTGGTTCTGGTCCGGCGACGGGA 118
Query 135 TCTGTTTCCGGCGTTAAGAAAAATGTGACGGCGAGTTCTGATGTTCCGGCAGCTCCGAAG 194
|||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 119 TCTGTTGCCGGCGGTAAGAAAAATGTGACGGCGAGTTCAGATGTTCCGGCGGCTCCGAAG 178
Query 195 AACACTGCTGATGGAGGGAAAGCATCTCTCCAGCCGAAACGTACACCTGTCTCCGACAAA 254
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 AACACTGCTGATGGAGGAAAAGCATCTCTGCAGCCGAAACGTACACCTGTCTCCGACAAA 238
Query 255 GAAATCGAATCTATTATGTTGGGTGGTTGCATATGACATTTGGGGAGTTACGAAGATTTG 314
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 239 GAAATCGAATCTATTATGTTGGGTGGTTGCATTTGACATTTGGG-AGTTACGAAGATTTG 297
Query 315 ATCGAACACATTGGTGTTCTTGTCTTGTTCGGCTGGTGATGTTTATTTTGCTGTTTTTAA 374
||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct 298 ATCGAACACTTTGGTGTTCTTGTCTTGT-CGGCTGGTGAAGTTTATTATGCTGTTTTTAA 356
Query 375 ATGTAAAGAAGTAACTAATAATGTAGAGAATATGATTTTATAAGAATGATACTCTTTCTC 434
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 ATGTAAAGAAATAACTAATAATGTAGAGAATATGATTTTGTAAGAATGATACTCTTTCTC 416
Query 435 GTTATTATTATTTAA-GATAAAAGGCCTCTTTCGAGTTTCTGCATT 479
||||||| |||| || ||||||| ||||||| ||||||||||||||
Sbjct 417 GTTATTAGTATTAAAAGATAAAATGCCTCTTCCGAGTTTCTGCATT 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17360792995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5