BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24170.1
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489277 jgi|Araly1|489277|fgenesh2_kg.6__2411__AT5G24170.1 946 0.0
> Ahg489277 jgi|Araly1|489277|fgenesh2_kg.6__2411__AT5G24170.1
Length=720
Score = 946 bits (512), Expect = 0.0
Identities = 570/599 (95%), Gaps = 0/599 (0%)
Strand=Plus/Plus
Query 3 tttttCTCCGATCATCGGAAAAAGCAGTAATCAAGATGCAGAAGCTCAACGACATCTTCT 62
|||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 1 TTTTTCTCCGATCATCGGAAAACGCAGTAATCGAGATGCAGAAGCTCAACGACTTCTTCT 60
Query 63 CCGGTGGAGGAGACGGCGACGGAACAACCGATAGTTTCCTTGAAGATGGATCGGAGGGTC 122
| ||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CTGGTGGCGGTGACGGCGAAGGAACAACCGATAGTTTCCTTGAAGAAGGATCGGAGGGTC 120
Query 123 TCTGTGCTCTCTCCACCACCCAGAGAATGTACGGATTCGCCGCGTCTTTAGCCACTGGTC 182
||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TCTGTGCGCTCTCCACTACCCAGAGAATGTACGGATTCGCCGCATCTTTAGCCACTGGTT 180
Query 183 TGCTACTTATGTTCCTGTCTATGATTGTATTTGGGATCCCCATCAAATTTGCACTGCTCT 242
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TGCTGCTTATGTTCCTGTCTATGATTGTATTTGGTATCCCCATCAAATTTGCACTGCTCT 240
Query 243 TCACATTTGGAAATGTTCTAGCTATTGGAAGCACAGCTTTCCTCATGGGACCTGAGCAAC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCACATTTGGAAATGTTCTAGCTATTGGAAGCACAGCTTTCCTCATGGGACCTGAGCAAC 300
Query 303 AGATGAGTATGATGTTTGACCCTGTTCGTTTCTTAGCTACATCCATTTATATCGGATGTG 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGATGAATATGATGTTTGACCCTGTTCGTTTCTTAGCTACATCCATTTATATCGGATGTG 360
Query 363 TCGTTGTTGCACTCATTTGCGCTCTCCTGATCCATAGCAAAATCTTAACGGTCCTTGCGA 422
||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||
Sbjct 361 TCGTTGTTGCACTCATTTGTGCTCTCCTGATCCACAGCAAAATTTTAACCGTCCTTGCGA 420
Query 423 TCTTATGTGAGATTTGTGCACTGATATGGTACAGCCTCAGTTATATTCCATTCGCACGGA 482
|| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCTATGCGAGATTTGTGCACTAATATGGTACAGCCTCAGTTATATTCCATTCGCACGGA 480
Query 483 GAATGGTCTCTGAAATAATGATCCGTCTTTGTGACACTGAGCTATAGTCAGTCATCTGGC 542
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 481 GAATGGTCTCTGAAATAATGATCCGTCTCTGCGACACCGAGCTATAGTCAGTCATCTGGC 540
Query 543 AGCAAAACACAAAGCACATAAATTGTTTTATACTGGTCTCGAGAACTTGTGATCTGATT 601
||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 541 AGCAAGATACAAAGCACATAAATTGTTTTATACTGGTCTCAAGAACTTGAGATCTGATT 599
Score = 182 bits (98), Expect = 4e-45
Identities = 115/123 (93%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 661 TGAGTTTGTTTTATTGGGGTCTTGAAGCTCTTGTGTGTATTTCGTTGCTTCAAGCTCTTC 720
|||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 600 TGAGCTTGTTTTATTGGGGTCGTGAAGCTCTTGTGTGTATTTTGTTGCTTCAAGCTCTTT 659
Query 721 TGTTGCTTCAGTCTTAAAACGTTGTTTGGCATTTTGTGTGATCAAATACAAAGATTTCTT 780
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 660 TGTTGCTTCAGTCTT-TAACGTTGTTTGGCATTTTGTGTGATCAAATACAAAGGTTT-TT 717
Query 781 TTT 783
|||
Sbjct 718 TTT 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29164031505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5