BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24180.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894309 jgi|Araly1|894309|Al_scaffold_0006_2305 1620 0.0
Ahg351441 jgi|Araly1|351441|fgenesh1_pg.C_scaffold_6002034 1170 0.0
Ahg941961 jgi|Araly1|941961|scaffold_602505.1 821 0.0
Ahg489279 jgi|Araly1|489279|fgenesh2_kg.6__2413__AT5G24190.1 599 1e-170
Ahg941960 jgi|Araly1|941960|scaffold_602504.1 405 4e-112
> Ahg894309 jgi|Araly1|894309|Al_scaffold_0006_2305
Length=1125
Score = 1620 bits (877), Expect = 0.0
Identities = 1049/1132 (93%), Gaps = 11/1132 (1%)
Strand=Plus/Plus
Query 1 ATGGGACGAGGTTCTCTCGGAAAACTGA-TGGGAGGAGAAGAGAGGGCTTCCA-AAGATA 58
||||||||||| || || ||||| || | |||||| ||| || |||| || ||||||
Sbjct 1 ATGGGACGAGG--CT-TCAGAAAA-AGATTAGGAGGAAAAGCGATAGCTT-CAGAAGATA 55
Query 59 CAGATACTTTCAACATTTTTGGCCCCTTCCATCTTACATCTATTGACTGGAACAATCAGT 118
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 56 CAGATACTTTCAGCATTTTTGGCCCCTTCCATCTTACATCTATTGACTGGACCAATCCGT 115
Query 119 ACCATCGAACCTCAGTGGCATCAAGTTTGGTAAATGGAGTGTATACATTGGAAGGGGACA 178
|||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 116 ACCATCGAACTTCAGTGGCATCAAGTTTGGTAAATGGAGTGTACACATTGGAAGCGGACA 175
Query 179 GGCTTGAGGAACGGGAAGGTTCTGAAGCACTAGCCAAGCCATGGTGGGAATTTTTCCACT 238
||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 176 GGCTTGAGGAACGGGTAGGTTCTGAAGCTCTAGCCAAGCCCTGGTGGGAATTTTTCCACT 235
Query 239 TCACTTTACTCGAAACCTTGATCGACGATGACAGCTCCATCTATGGTGCCATTTTCGAAT 298
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 236 TCACTTTACTCGAAACCTTGAACGACGATGACAGCTCCATATATGGTGCCATTTTCGAAT 295
Query 299 ACGAACTATACCACCTCTACCAAAATACCCCTCATGTGAAAGTTCCACGCTATGTAATTG 358
|||| |||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 296 ACGAGCTATACAACCTTTACGAAAATACCCCTCATGTGAAAGTTCCACGCTATGTGATTG 355
Query 359 CTTTCCGCGGCACAGTTTTAAAGGGAAAAACTTGGAAGTTTGATTTGAAACTTGACCTCA 418
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCTTCCGCGGCACGGTTTTAAAGGGAAAAACTTGGAAGTTTGATTTGAAACTTGACCTCA 415
Query 419 AATGCATCTTCAACACCCTCCATCAAGGTGGCAGGTCTATGTACGCCATAAATGTAATCC 478
||||||||||||||||||||||||||||| ||||||||||||||| | || | | |||
Sbjct 416 AATGCATCTTCAACACCCTCCATCAAGGTAATAGGTCTATGTACGCCCTGAACGCAGTCC 475
Query 479 GCCGTATGGTGGACAAACACAACCATTCAGCTATCTGGCTTGCTGGACACTCTTTGGGAG 538
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 476 GCCGTATGGTGGATAAACACAACCATTCAGCTATCTGGCTTGCTGGACACTCATTGGGAG 535
Query 539 CCGCCCTAGTGTTGCTGGCTGGAAAGACCATGAAAATT-TCTGGATTCCTCCTCGAGAGT 597
|||||||||||||| |||||||||||||||||| | | ||||||| ||||||| |||
Sbjct 536 CCGCCCTAGTGTTGTTGGCTGGAAAGACCATGACTAGGGT-TGGATTCTTCCTCGAAAGT 594
Query 598 TACATATTCAACCCACCCATCTCGTCTATTCCTCTAGAGCAGCTACCTGGTGGCGATATA 657
|||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 595 TACATATTTAACCCACCCATCTCTTCTATTCCTCTAGAGCAGCTACCCGGGGGCGATATA 654
Query 658 ATTAAAGGTTTGTTTCAAATCACCAAGAGTGTCGTCAAAGCCACCGTAGCCATGGCCTTA 717
||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 655 ATTAAAGGTGTGTTTCAAATCGCCAAAAGTGTCGTCAAAGCCACCGTAGCCATGGCCTTA 714
Query 718 ACCGATCTACAGGTTCCAAAAGACGATCCAAAGACAGCATCATGGATACCTTATTTATAT 777
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 ACCGATCTACAGGTTCCAATAGACGATCCAAAGACAGCATCATGGATACCTTATTTATAC 774
Query 778 GTGAATCCAGCAGATCCAATATGTGCAGGATACATCGATTACTTCAGACACAAAACCTTC 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTGAATCCAGCAGATCCAATTTGTGCAGGATACATCGATTACTTCAGACACAAAACCTTC 834
Query 838 ATGTCTGAGATAGGAGCAAGCCACATCGAGAGAATCGGTGCTAGAAAATCAGTTAGGAGT 897
||||||||||| ||||||||| |||| ||||||| |||||||||||| ||||||||||||
Sbjct 835 ATGTCTGAGATCGGAGCAAGCGACATTGAGAGAACCGGTGCTAGAAAGTCAGTTAGGAGT 894
Query 898 CTATTGGTGGGAAGAAGAGGAAAA-CTATCACCGTCGGATTTGTCATCGGAACCTCTCCA 956
|||||||||||||||| ||||||| | || | | ||||||||||||||||||||||| ||
Sbjct 895 CTATTGGTGGGAAGAAAAGGAAAAAC-ATTATCATCGGATTTGTCATCGGAACCTCTTCA 953
Query 957 CCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAACCGACTAAGTCAACGACAGC 1016
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 954 CCTTCTTCCATCAGCGGATATGACTGTAAACAAGAACAAACCGACTAAGTCTACGACAGC 1013
Query 1017 TCACGGACTTCACCAATGGTGGGAGCGAGACTCGACACTGAGGGAAAATTGGGAAAGCTG 1076
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1014 TCATGGACTTCACCAATGGTGGGAGCGAGACTCGACACTGAGGGCAAATTGGGAAAGCTG 1073
Query 1077 CTGCATCAGACCTTACCATGAAGGCAAATTGGAGCAACTGACCATACAATAA 1128
|||||| |||||||||| ||||| ||||||||||||| ||||| | ||||||
Sbjct 1074 CTGCATTAGACCTTACCCTGAAGACAAATTGGAGCAATTGACCCTCCAATAA 1125
> Ahg351441 jgi|Araly1|351441|fgenesh1_pg.C_scaffold_6002034
Length=1128
Score = 1170 bits (633), Expect = 0.0
Identities = 985/1150 (86%), Gaps = 44/1150 (4%)
Strand=Plus/Plus
Query 1 ATGGGACGAGGTTCTCTC-GGAAAACTGATGGGAGGAGAAGAGAGGGCTTCCA-A---AG 55
|||||||||||||||||| || ||| |||| ||||||| || || ||| | || | ||
Sbjct 1 ATGGGACGAGGTTCTCTCAGG-AAATTGATAGGAGGAGGAGCGATGGCCT-CAGACCCAG 58
Query 56 ATACAGATACTTTCAACATTTTTGGCCCCTTCCATCTTACATCTATTGACTGGAACAA-T 114
||| ||| ||||| ||| ||||||||||||||||||||||||||||| |||| ||| |
Sbjct 59 ATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAATT 118
Query 115 CAGTACCATCGAACCTCAGTGGCATCAAGTTTGGTAAATGGAGTGTATACATTGGAAGGG 174
| |||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| ||
Sbjct 119 C-GTACCATCGAACGTCAGTAGCATCAAGTTTGGTAAATGGAGTGTACACAATGGAACGG 177
Query 175 GACAGGCTTGAGGAACGGGAAGGTTCTGAAGCACTAGCCAAGCCATGGTGGGAATTTTTC 234
|||| || ||| |||||| |||||| ||| ||| ||||| ||| |||||||| ||||||
Sbjct 178 GACAAGCAAGAGAAACGGGTAGGTTCCGAATCACGAGCCATGCCCTGGTGGGATTTTTTC 237
Query 235 CACTTCACTTTACTCGAAACCTTGATCGACGA-T--GACAGCTCCATCTATGGTGCCATT 291
||||| ||||| ||||||||||||||||||| | || |||||||| || ||||| ||
Sbjct 238 AACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGATAGCTCCATATACGGTGCTGTT 297
Query 292 TTCGAATACGAA-CTATACC-ACCTCTACCAAAATACCCCTCATGTGAAAG---TTCCAC 346
||||||||| || || | || |||| | |||||||||| |||||||||||| |||||
Sbjct 298 TTCGAATAC-AAGCTCT-CCAACCTTTGCCAAAATACCTCTCATGTGAAAGCACCTCCAC 355
Query 347 GCTATGTAATTGCTTTCCGCGGCACAG-TTTTAAAGGGAAAAACTTGGAAGTTTGATTTG 405
| ||||| ||||| ||||||||||| | | || || | ||||||||| | |||| ||
Sbjct 356 GTTATGTGATTGCATTCCGCGGCAC-GATCCTAGAGTCAGAAACTTGGATGACTGATGTG 414
Query 406 AAACTTGACCTCAAATGCATCTTCAACACCCTCCATCAAGGTGGCAGGTCTATGTACGCC 465
|||| | ||||||||| || |||||||||||||||| ||||||| |||||| || | |||
Sbjct 415 AAACATAACCTCAAATTCAGCTTCAACACCCTCCATGAAGGTGGTAGGTCTTTGCAGGCC 474
Query 466 ATA-AATGTAATCCGCCGTATGGTGGACAAACACAACCATTCAGCTATCTGGCTTGCTGG 524
||| | | ||| ||| ||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 475 ATACGA-GCAATACGCAATATGGTGGAAAAACACAACCATTCAGCTATATGGCTCGCTGG 533
Query 525 ACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCATGA-AAATTTCTGGAT 583
||||||||||||||||||||||| |||| |||||||||||||||||| || ||| |||||
Sbjct 534 ACACTCTTTGGGAGCCGCCCTAGCGTTGTTGGCTGGAAAGACCATGACAAGTTT-TGGAT 592
Query 584 TCCTCCTCGAGAGTTACATATTCAACCCACCCATCTCGTCTATTCCTCTAGAGCAGCTAC 643
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 593 TCCTCCTCGAAAGTTACATATTCAACCCACCCATCTCGTGTATTCCTCTAGAGCAGTTAC 652
Query 644 CTGGTGGCG-ATATA-ATTAAAGGTTTGTTTCAAATCACCAAGAGTGTCGTCAAAGCCAC 701
|||| || | | | | ||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 653 CTGG-GG-GAAAAAAGATTAAAGGTGCGTTTCAATTCACCAAGACTGTCGTCAAAGCCAC 710
Query 702 CGTAGCCATGGCCTTAACCGATCTACAGGTTCCAA-AAGACGATCCAAAGACAGCATCAT 760
||||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||||||||
Sbjct 711 CGTAGCCATGGTCTTAACCGATCTTCAGGTT-CAAGAAGACGATCCAAAAACAGCATCAT 769
Query 761 GGATACCTTATTTATATGTGAATCCAGCAGATCCAATATGTGCAGGATACATCGATTACT 820
|||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 770 GGATACCTTATTTATATGTGAACCCAGAAGATCCAATATGTGCAGGATACATTGATTACT 829
Query 821 TCAGACACAAAACCTTCATGTCTGAGATAGGAGCAAGCCACATCGAGAGAATC-GGTGCT 879
||| ||||||||||||||||||| |||| || |||||| | ||||||| || | ||||||
Sbjct 830 TCAAACACAAAACCTTCATGTCTAAGATCGGTGCAAGCAAAATCGAGA-AAGCCGGTGCT 888
Query 880 AGAAAATCAGTTAGGAGTCTATTGGTGGGAAGAAGAGGAAAACTATCACCGTCGGATTTG 939
|||| |||||||||||||||||| |||||| || | | |||| |||||||||
Sbjct 889 GGAAAGTCAGTTAGGAGTCTATTGATGGGAA-AATC--AT--C-ATCA---TCGGATTTG 939
Query 940 TCATCGGAACCTCTCCACCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAACCG 999
||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 940 TCAACGGAACCTCTTCACCTTCTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCG 999
Query 1000 ACTAAGTCAACGACAGCTCACGGACTTCACCAATGGTGGGAGCGAGACTCGAC-ACTGAG 1058
|||||||| | ||||||||| |||||||| ||||||||||||||||||||| | | ||||
Sbjct 1000 ACTAAGTCTATGACAGCTCATGGACTTCATCAATGGTGGGAGCGAGACTCGGCCA-TGAG 1058
Query 1059 GGAAAATTGGGAAAGCTGCTGCATCAGACCTTACCATGAAGGCAAATTGGAGCAACTGAC 1118
|||||||||||||||||| ||||| || |||| | |||||| ||||||| ||||| ||||
Sbjct 1059 GGAAAATTGGGAAAGCTGTTGCATTAGGCCTTTCTATGAAGACAAATTGCAGCAATTGAC 1118
Query 1119 CATACAATAA 1128
|||| |||||
Sbjct 1119 CATAGAATAA 1128
> Ahg941961 jgi|Araly1|941961|scaffold_602505.1
Length=1053
Score = 821 bits (444), Expect = 0.0
Identities = 621/706 (88%), Gaps = 14/706 (2%)
Strand=Plus/Plus
Query 430 AACACCCTCCATCAAGGTGGCAGGTCTATGTACGCCATA-AATGTAATCCGCCGTATGGT 488
|||||||||||||| || | ||||||||| |||||||| | | ||||||| | ||||
Sbjct 335 AACACCCTCCATCATGGCAGTAGGTCTATGCACGCCATACGA-GCAATCCGCAATGTGGT 393
Query 489 GGACAAACACAACCATTCAGCTATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGT 548
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 394 GGACAAACATAACCATTCAGCTATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGT 453
Query 549 GTTGCTGGCTGGAAAGACCATGA-AAATTTCTGGAT-TCCTCCTCGAGAGTTACATATTC 606
|||| |||||||||||||||||| | |||| |||| | ||||||| ||||||||||||
Sbjct 454 GTTGTTGGCTGGAAAGACCATGACACGTTTC-GGATAT-TTCCTCGAAAGTTACATATTC 511
Query 607 AACCCACCCATCTCGTCTATTCCTCTAGAGCAGCTACCTGGTGGCGATATAATTAAAGGT 666
||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 512 AACCCACCCATCTCGTCTATTCCTCTAGAACAGCTACCTGGGGGAGATATGCTTAAAGGT 571
Query 667 TTGTTTCAAATCACCAAGAGTGTCGTCAAAGCCACCGTAGCCATGGCCTTAACCGATCTA 726
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 572 ATGTTTCAAATCACCAAGAGTGTCGTCAAAGCTACCGTAGCCATTGCCTTAACCGATCTA 631
Query 727 CAGGTTCCAA-AAGACGATCCAAAGACAGCATCATGGATACCTTATTTATATGTGAATCC 785
|| |||| || |||| |||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 632 CATGTTC-AAGAAGAAGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGAATTC 690
Query 786 AGCAGATCCAATATGTGCAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGA 845
||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct 691 AGCAGATCCAATATGTGCAGGATTCATCGATTACTTCAAACGCAAAACCTTCATGTCTAA 750
Query 846 GATAGGAGCAAGCCACATCGAGAGAATC-GGTGCTAGAAAATCAGTTAGGAGTCTATTGG 904
||| || |||||| | ||||||| || | ||| || |||| ||||||||| ||||||||
Sbjct 751 GATCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAGTCAGTTAGGTGTCTATTGC 809
Query 905 TGGGAAGAAGAGGAAAA-CTATCACCGTCGGATTTGTCATCGGAACCTCTCCACCTTCTT 963
| | ||||| ||||||| | |||| |||||||||||||| |||||||||| |||||||||
Sbjct 810 TCGAAAGAAAAGGAAAATC-ATCATCGTCGGATTTGTCAACGGAACCTCTTCACCTTCTT 868
Query 964 CCATCAGCAGATATGACTGTAAACAAGAACAAACCGACTAAGTCAACGACAGCTCACGGA 1023
|| ||||||||||||| ||| |||||||||||||| |||| ||| | |||||| || |||
Sbjct 869 CCTTCAGCAGATATGATTGTCAACAAGAACAAACCTACTACGTCTATGACAGCGCATGGA 928
Query 1024 CTTCACCAATGGTGGGAGCGAGACTCGACACTGAGGGAAAATTGGGAAAGCTGCTGCATC 1083
||||| || ||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 929 CTTCATCAGTGGTGGGAGCGAGACCCTACTCTGAGGGAAAATTGGGAAAGCTGCTGCATT 988
Query 1084 AGACCTTAC-CATGAAGGCAAATTGGAGCAACTGACCATACAATAA 1128
||||| | | | ||||||||||| | ||| ||||||||||||||
Sbjct 989 AGACCCAAGTC-TAAAGGCAAATTGCACCAATTGACCATACAATAA 1033
> Ahg489279 jgi|Araly1|489279|fgenesh2_kg.6__2413__AT5G24190.1
Length=959
Score = 599 bits (324), Expect = 1e-170
Identities = 598/727 (82%), Gaps = 31/727 (4%)
Strand=Plus/Plus
Query 399 TGATTTGAAACTTGACCTCAAATGCATCTTCAACACCCTCCATCAAGGTGGCAGGTCTAT 458
|||| ||||||||||| || ||||||||| || | ||||||| ||| ||| || ||||
Sbjct 6 TGATGTGAAACTTGACATCCGATGCATCTTTAATAACCTCCATGGAGGCGGCCGGACTAT 65
Query 459 GTACGCCATA-AATG-TAATCCGCCG-TATGGTGGACAAACACAACCATTCAGCTATCTG 515
|||||||| || | | ||| | || |||| | |||||||||| | | |||||||| ||
Sbjct 66 CCACGCCATACAA-GCT-ATCAG-CGCTATGATTGACAAACACAGCGAATCAGCTATATG 122
Query 516 GCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCATGAAAAT 575
||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||
Sbjct 123 GCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGATGGCCGGGAAGACCATGAACAT 182
Query 576 TTCTGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATC-TCGTCTATTCCTCTAG 634
|| |||||||||||||||||||||||||||||||||||||||| | || ||||||| |
Sbjct 183 TTATGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATCAT-AACTGTTCCTCTGG 241
Query 635 AGCAGCTACCTGGTGGCGATATAATTAAAGGTTTGTTTCAAATCACCAAGAGTGTCGTCA 694
||||||||||||| |||| || | |||||||| ||| || |||| || ||||| ||||||
Sbjct 242 AGCAGCTACCTGGCGGCGGTACACTTAAAGGTGTGTATCGAATCGCCGAGAGTCTCGTCA 301
Query 695 AAGCCAC--C-G-TAG---C--CATGGCCTTAACCGATCTACAGGTTCCAAAAGACGATC 745
|||| || | | ||| | |||||||||||| ||| || |||| | |||| |||
Sbjct 302 AAGCTACTGCAGCTAGTTTCGAGATGGCCTTAACCAATCAACGGGTT-C--AAGAAGATT 358
Query 746 CAAAGACAGCATCATGGATACCTTATTTATATGTGAATCCAGCAGATCCAATATGTGCAG 805
| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 359 CTAAGACAGCATCGTGGATACCTTATATATATGTGAATCCAGCAGATCCAATTTGTGCAG 418
Query 806 GATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGATAGGAGCAAGCCACATCG 865
|||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||
Sbjct 419 GATACATCGATTACTTCAGACACAAAACCTTCATGTCTAAGATCGGAGCAAGTAAAATCG 478
Query 866 AGAGAATCGGTGCTAGAAAATCAGTTAGGAGTCTATTGGTGG-GAAGAAGAGGAAAA-CT 923
||| || |||| ||||| | ||| |||| | || || || || ||| ||||| | |
Sbjct 479 AGAAAACCGGTTCTAGACATTCATTTAGAACTCAAT-GGAAACGAGGAATAGGAACATC- 536
Query 924 ATCACC---GTCGGATTTGTCA-TCGGAACCTCTCCACCTTCTTCCATCAGCAGATATGA 979
|||||| ||| ||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 537 ATCACCACTGTCCGATTTGTCAAT-GGAACCTCTTCACCTTCTTCCATCAGCAGATATGA 595
Query 980 CTGTAAACAAGAACAAACCGACTAAGTCAACGACAGCTCACGGACTTCACCAATGGTGGG 1039
|| | |||||||||||| || | ||| | | |||||| || ||||||||||||||||
Sbjct 596 CTATCAACAAGAACAAATCGTGTTCGTCTATGGTAGCTCATGGGCTTCACCAATGGTGGG 655
Query 1040 AGCGAGACTCGA-CACTGAGGGAAAATTGGGAAAGCTGCTGCATCAGACCTTACCATGAA 1098
||| ||||||| | || ||| |||||||| ||||||||| || || || ||| ||||
Sbjct 656 AGCAAGACTCGGTC-CTAAGGAAAAATTGGAAAAGCTGCTTAATTAGGCCCGACCCTGAA 714
Query 1099 GGCAAAT 1105
|||||||
Sbjct 715 GGCAAAT 721
> Ahg941960 jgi|Araly1|941960|scaffold_602504.1
Length=422
Score = 405 bits (219), Expect = 4e-112
Identities = 316/363 (87%), Gaps = 6/363 (2%)
Strand=Plus/Plus
Query 729 GGTTCCAA-AAGACGATCCAAAGACAGCATCATGGATACCTTATTTATATGTGAATCCAG 787
|||| ||| ||||||||||||| | |||||||||||||||||||||||||||| | ||||
Sbjct 24 GGTT-CAAGAAGACGATCCAAACAAAGCATCATGGATACCTTATTTATATGTGGACCCAG 82
Query 788 CAGATCCAATATGTGCAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGA 847
| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |||
Sbjct 83 CCGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAAAATTCATGTCTAAGA 142
Query 848 TAGGAGCAAGCCACATCGAGAGAATC-GGTGCTAGAAAATCAGTTAGGAGTCTATTGGTG 906
| || |||||| | ||||||| || | ||| || |||| ||||||||| |||||||| |
Sbjct 143 TCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAGTCAGTTAGGTGTCTATTGCTC 201
Query 907 GGAAGAAGAGGAAAA-CTATCACCGTCGGATTTGTCATCGGAACCTCTCCACCTTCTTCC 965
| ||||| ||||||| | |||| |||||||||||||| |||||||||| |||||||||||
Sbjct 202 GAAAGAAAAGGAAAATC-ATCATCGTCGGATTTGTCAACGGAACCTCTTCACCTTCTTCC 260
Query 966 ATCAGCAGATATGACTGTAAACAAGAACAAACCGACTAAGTCAACGACAGCTCACGGACT 1025
||||||||||||| ||| |||||||||||||| |||| ||| | ||||||||| || ||
Sbjct 261 TTCAGCAGATATGATTGTCAACAAGAACAAACCTACTACGTCTATGACAGCTCATGGGCT 320
Query 1026 TCACCAATGGTGGGAGCGAGACTCGACACTGAGGGAAAATTGGGAAAGCTGCTGCATCAG 1085
||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||||||| ||
Sbjct 321 TCACCAATGGTGGGAGCGAGACTCGTCACTGAGAGCAAATTGGGAGAGCCGCTGCATTAG 380
Query 1086 ACC 1088
|||
Sbjct 381 ACC 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5