BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24190.1
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489279 jgi|Araly1|489279|fgenesh2_kg.6__2413__AT5G24190.1 948 0.0
Ahg941961 jgi|Araly1|941961|scaffold_602505.1 503 1e-141
Ahg351441 jgi|Araly1|351441|fgenesh1_pg.C_scaffold_6002034 475 2e-133
Ahg941960 jgi|Araly1|941960|scaffold_602504.1 291 9e-78
> Ahg489279 jgi|Araly1|489279|fgenesh2_kg.6__2413__AT5G24190.1
Length=959
Score = 948 bits (513), Expect = 0.0
Identities = 686/765 (90%), Gaps = 29/765 (4%)
Strand=Plus/Plus
Query 1 ATGCCTGATGTGAAACTTGACATCCGATGCATC-TTAGATAACCTCCATCAAGGC-CCCA 58
||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||
Sbjct 1 ATGCCTGATGTGAAACTTGACATCCGATGCATCTTTA-ATAACCTCCATGGAGGCGGCC- 58
Query 59 GGACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAAACACAGCGAATCAGCTA 118
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 59 GGACTATCCACGCCATACAAGCTATCAGCGCTATGATTGACAAACACAGCGAATCAGCTA 118
Query 119 TCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCCGGGAAGACCATGA 178
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 119 TATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGATGGCCGGGAAGACCATGA 178
Query 179 AAATTTCTGGATTCCTTCTCGAGAGTTACATATTCAACCCACCCATCATATCTATTCCTC 238
| |||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 179 ACATTTATGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATCATAACTGTTCCTC 238
Query 239 TAGAGCAGCTACCTGGCGGCGTT-CTACTTAAAGGTGTGTTTCGAATCACCGAGAGCCTC 297
| ||||||||||||||||||| | | |||||||||||||| ||||||| ||||||| |||
Sbjct 239 TGGAGCAGCTACCTGGCGGCGGTAC-ACTTAAAGGTGTGTATCGAATCGCCGAGAGTCTC 297
Query 298 GTCAAAGCTACTGCAGCTACTGTTACTA--TGGCCTTAACTGATCAACGGGTTCAAGAAG 355
||||||||||||||||||| | || | | |||||||||| ||||||||||||||||||
Sbjct 298 GTCAAAGCTACTGCAGCTAGT-TT-CGAGATGGCCTTAACCAATCAACGGGTTCAAGAAG 355
Query 356 ATTCCAAAACAGCATTGTGGATACCTTATTTATATGTGAATCCAGCAGATCCAATATGTG 415
|||| || ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 356 ATTCTAAGACAGCATCGTGGATACCTTATATATATGTGAATCCAGCAGATCCAATTTGTG 415
Query 416 CAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGATCGGAGCAAGCCACA 475
|||||||||| |||||||||| |||||||| |||||||||||||||||||||||| | |
Sbjct 416 CAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTAAGATCGGAGCAAGTAAAA 475
Query 476 TCGAGAGAATCGGTTCTAGA-AGCTCATTTAGAAATCCATGGACCCGAAGAATAGGAAca 534
|||||| || |||||||||| | |||||||||| || ||||| ||| |||||||||||
Sbjct 476 TCGAGAAAACCGGTTCTAGACAT-TCATTTAGAACTCAATGGAAACGAGGAATAGGAACA 534
Query 535 tcatcatcatcatcatcaCCACTGTCTGATTTGTCAATGGAACCTCTTCACCTTCTTCCA 594
|||||| | || | | ||| |||||||||||||||||||||||||||||||||
Sbjct 535 TCATCA-C--CA-C-T-------GTCCGATTTGTCAATGGAACCTCTTCACCTTCTTCCA 582
Query 595 TCAGCAGATATGACTGTAAACAAGAACAAATCG-GCTTCGTCTATGGCAGCTCATGGGCT 653
||||||||||||||| | ||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 583 TCAGCAGATATGACTATCAACAAGAACAAATCGTG-TTCGTCTATGGTAGCTCATGGGCT 641
Query 654 TCACCAATGGTGGGAGCAAGACTCCGTCCTAAGGAAAAATTGGAAAAACTGTTTGATTAG 713
|||||||||||||||||||||||| |||||||||||||||||||||| ||| || |||||
Sbjct 642 TCACCAATGGTGGGAGCAAGACTCGGTCCTAAGGAAAAATTGGAAAAGCTGCTTAATTAG 701
Query 714 GCCCGATCCTGGAGACAAATCTTGAA-G-AGTGCATCAAATGATA 756
|||||| |||| || ||||||||||| | | ||||||||||||||
Sbjct 702 GCCCGACCCTGAAGGCAAATCTTGAAAGGA-TGCATCAAATGATA 745
> Ahg941961 jgi|Araly1|941961|scaffold_602505.1
Length=1053
Score = 503 bits (272), Expect = 1e-141
Identities = 558/689 (81%), Gaps = 47/689 (7%)
Strand=Plus/Plus
Query 42 CCTCCATCAAGGCCCCAGGACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAA 101
||||||||| ||| ||| |||| |||||||||| ||| |||||| | || | |||||
Sbjct 340 CCTCCATCATGGCAGTAGGTCTATGCACGCCATACGAGCAATCCGCAATGTGGTGGACAA 399
Query 102 ACACAGCGAATCAGCTATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCT 161
||| | | | |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 400 ACATAACCATTCAGCTATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGTT 459
Query 162 GGCCGGGAAGACCATGAAAA-TTTCTGGAT-TCCTTC-TCGAGAGTTACATATTCAACCC 218
||| || |||||||||| | |||| |||| | ||| |||| |||||||||||||||||
Sbjct 460 GGCTGGAAAGACCATGACACGTTTC-GGATAT--TTCCTCGAAAGTTACATATTCAACCC 516
Query 219 ACCCATCATA-TCTATTCCTCTAGAGCAGCTACCTGGCGGCGTTCTACTTAAAGGTGTGT 277
||||||| | |||||||||||||| ||||||||||| || | | | ||||||||| |||
Sbjct 517 ACCCATC-TCGTCTATTCCTCTAGAACAGCTACCTGGGGGAGATATGCTTAAAGGTATGT 575
Query 278 TTCGAATCACCGAGAGCCTCGTCAAAGCTACTGCAGCTACTGTTACTATGGCCTTAACTG 337
||| ||||||| |||| ||||||||||||| | ||| | | | || ||||||| |
Sbjct 576 TTCAAATCACCAAGAGTGTCGTCAAAGCTACCGTAGC--C----A-T-TG-CCTTAACCG 626
Query 338 ATCAACGGGTTCAAGAAGAT--TCCAAAA-CAGCATTGTGGATACCTTATTTATATGTGA 394
||| || ||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 627 ATCTACATGTTCAAGAAGAAGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGA 686
Query 395 ATCCAGCAGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGT 454
|| |||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||
Sbjct 687 ATTCAGCAGATCCAATATGTGCAGGATTCATCGATTACTTCAAACGCAAAACCTTCATGT 746
Query 455 CTAAGATCGGAGCAAGCCACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCC 512
|||||||||| |||||| | ||||||| || | |||||| ||| | ||| |||| ||
Sbjct 747 CTAAGATCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAG-TCAGTTAGGTGTCT 804
Query 513 ATGGACCCGAA-GAATAGGAAcatcatcatcatcatcatcaCCACTGTCTGATTTGTCAA 571
|| | | |||| ||| ||||| | ||||||||| || | ||||||||||
Sbjct 805 ATTG-CTCGAAAGAAAAGGAA-A--ATCATCATCGTC---------G---GATTTGTCAA 848
Query 572 TGGAACCTCTTCACCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTT 631
||||||||||||||||||||| ||||||||||||| ||| |||||||||||| | ||
Sbjct 849 CGGAACCTCTTCACCTTCTTCCTTCAGCAGATATGATTGTCAACAAGAACAAACCTACTA 908
Query 632 CGTCTATGGCAGCTCATGGGCTTCACCAATGGTGGGAGCAAGACTCCGT-C-CTAAGGAA 689
|||||||| |||| ||||| ||||| || |||||||||| |||| || | | || ||| |
Sbjct 909 CGTCTATGACAGCGCATGGACTTCATCAGTGGTGGGAGCGAGAC-CC-TACTCTGAGGGA 966
Query 690 AAATTGGAAAAACTGTTTG-ATTAGGCCC 717
||||||| ||| ||| | | ||||| |||
Sbjct 967 AAATTGGGAAAGCTGCT-GCATTAGACCC 994
> Ahg351441 jgi|Araly1|351441|fgenesh1_pg.C_scaffold_6002034
Length=1128
Score = 475 bits (257), Expect = 2e-133
Identities = 581/729 (80%), Gaps = 56/729 (8%)
Strand=Plus/Plus
Query 1 ATGCCTGATGTGAAACTTGACATCCGATGCATCTT-AGATAACCTCCATCAAGGCCCCAG 59
||| |||||||||||| | || || || || ||| | | | ||||||| |||| ||
Sbjct 403 ATGACTGATGTGAAACATAACCTCAAATTCAGCTTCA-ACACCCTCCATGAAGGTGGTAG 461
Query 60 GACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAAACACAGCGAATCAGCTAT 119
| || | || ||||||| ||| || ||| |||| | || ||||||| | | ||||||||
Sbjct 462 GTCTTTGCAGGCCATACGAGCAATACGCAATATGGTGGAAAAACACAACCATTCAGCTAT 521
Query 120 CTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCCGGGAAGACCATGAA 179
||||| |||||||||||||||||||||||||||| |||| |||| || ||||||||||
Sbjct 522 ATGGCTCGCTGGACACTCTTTGGGAGCCGCCCTAGCGTTGTTGGCTGGAAAGACCATGAC 581
Query 180 AA-TTTCTGGATTCCTTCTCGAGAGTTACATATTCAACCCACCCATCATA-TCTATTCCT 237
|| ||| ||||||||| ||||| |||||||||||||||||||||||| | | |||||||
Sbjct 582 AAGTTT-TGGATTCCTCCTCGAAAGTTACATATTCAACCCACCCATC-TCGTGTATTCCT 639
Query 238 CTAGAGCAGCTACCTGGCGGCGTTCT-ACTTAAAGGTGTGTTTCGAAT-CACCGAGAGCC 295
||||||||| ||||||| || | ||||||||| ||||| ||| |||| ||| |
Sbjct 640 CTAGAGCAGTTACCTGGGGGAAAAAAGA-TTAAAGGTGCGTTTC-AATTCACCAAGA-CT 696
Query 296 -TCGTCAAAGCTACTGCAGCTACTGTTACTATGGCCTTAACTGATCAACGGGTTCAAGAA 354
|||||||||| || | | || | | |||| |||||| |||| | ||||||||||
Sbjct 697 GTCGTCAAAGCCAC--C-G-TA--GC--C-ATGGTCTTAACCGATCTTCAGGTTCAAGAA 747
Query 355 GAT--TCCAAAA-CAGCATTGTGGATACCTTATTTATATGTGAATCCAGCAGATCCAATA 411
|| ||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 748 GACGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGAACCCAGAAGATCCAATA 807
Query 412 TGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGATCGGAGCAAGC 471
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 808 TGTGCAGGATACATTGATTACTTCAAACACAAAACCTTCATGTCTAAGATCGGTGCAAGC 867
Query 472 CACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCCATGGACCCGAAGAATAG 529
| ||||||| || | ||| || ||| | ||| |||| | || || || | | |
Sbjct 868 AAAATCGAGA-AAGCCGGTGCTGGAAAG-TCAGTTAGGAGTCTATTGAT--G--G----G 917
Query 530 GAAcatcatcatcatcatcatcaCCACTGTCTGATTTGTCAATGGAACCTCTTCACCTTC 589
|| | |||||||||||| | |||||||||| |||||||||||||||||
Sbjct 918 -AA-A--ATCATCATCATC---------G---GATTTGTCAACGGAACCTCTTCACCTTC 961
Query 590 TTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTTCGTCTATGGCAGCTCATG 649
|||||||||||||||||| |||||||||||||||| || || ||||||| |||||||||
Sbjct 962 TTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGTCTATGACAGCTCATG 1021
Query 650 GGCTTCACCAATGGTGGGAGCAAGACTCCGTCC-TAAGGAAAAATTGGAAAAACTGTTTG 708
| ||||| ||||||||||||| |||||| | || | ||| |||||||| ||| ||||| |
Sbjct 1022 GACTTCATCAATGGTGGGAGCGAGACTCGG-CCATGAGGGAAAATTGGGAAAGCTGTT-G 1079
Query 709 -ATTAGGCC 716
||||||||
Sbjct 1080 CATTAGGCC 1088
> Ahg941960 jgi|Araly1|941960|scaffold_602504.1
Length=422
Score = 291 bits (157), Expect = 9e-78
Identities = 297/360 (83%), Gaps = 28/360 (8%)
Strand=Plus/Plus
Query 345 GGTTCAAGAAGA--TTCCAAA-ACAGCATTGTGGATACCTTATTTATATGTGAATCCAGC 401
|||||||||||| |||||| | ||||| ||||||||||||||||||||| | |||||
Sbjct 24 GGTTCAAGAAGACGATCCAAACAAAGCATCATGGATACCTTATTTATATGTGGACCCAGC 83
Query 402 AGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGAT 461
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 84 CGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAAAATTCATGTCTAAGAT 143
Query 462 CGGAGCAAGCCACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCCATGGACC 519
||| |||||| | ||||||| || | |||||| ||| | ||| |||| || || | |
Sbjct 144 CGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAG-TCAGTTAGGTGTCTATTG-CT 200
Query 520 CGAA-GAATAGGAAcatcatcatcatcatcatcaCCACTGTCTGATTTGTCAATGGAACC 578
|||| ||| ||||| | ||||||||| || | |||||||||| ||||||
Sbjct 201 CGAAAGAAAAGGAA-A--ATCATCATCGTC---------G---GATTTGTCAACGGAACC 245
Query 579 TCTTCACCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTTCGTCTAT 638
||||||||||||||| ||||||||||||| ||| |||||||||||| | || |||||||
Sbjct 246 TCTTCACCTTCTTCCTTCAGCAGATATGATTGTCAACAAGAACAAACCTACTACGTCTAT 305
Query 639 GGCAGCTCATGGGCTTCACCAATGGTGGGAGCAAGACTCCGTC-CTAAG-GAAAAATTGG 696
| |||||||||||||||||||||||||||||| |||||| ||| || || | ||| ||||
Sbjct 306 GACAGCTCATGGGCTTCACCAATGGTGGGAGCGAGACTC-GTCACTGAGAGCAAA-TTGG 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37779810747
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5