BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24190.1 Length=1016 Score E Sequences producing significant alignments: (Bits) Value Ahg489279 jgi|Araly1|489279|fgenesh2_kg.6__2413__AT5G24190.1 948 0.0 Ahg941961 jgi|Araly1|941961|scaffold_602505.1 503 1e-141 Ahg351441 jgi|Araly1|351441|fgenesh1_pg.C_scaffold_6002034 475 2e-133 Ahg941960 jgi|Araly1|941960|scaffold_602504.1 291 9e-78 > Ahg489279 jgi|Araly1|489279|fgenesh2_kg.6__2413__AT5G24190.1 Length=959 Score = 948 bits (513), Expect = 0.0 Identities = 686/765 (90%), Gaps = 29/765 (4%) Strand=Plus/Plus Query 1 ATGCCTGATGTGAAACTTGACATCCGATGCATC-TTAGATAACCTCCATCAAGGC-CCCA 58 ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| || Sbjct 1 ATGCCTGATGTGAAACTTGACATCCGATGCATCTTTA-ATAACCTCCATGGAGGCGGCC- 58 Query 59 GGACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAAACACAGCGAATCAGCTA 118 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 59 GGACTATCCACGCCATACAAGCTATCAGCGCTATGATTGACAAACACAGCGAATCAGCTA 118 Query 119 TCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCCGGGAAGACCATGA 178 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 119 TATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGATGGCCGGGAAGACCATGA 178 Query 179 AAATTTCTGGATTCCTTCTCGAGAGTTACATATTCAACCCACCCATCATATCTATTCCTC 238 | |||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 179 ACATTTATGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATCATAACTGTTCCTC 238 Query 239 TAGAGCAGCTACCTGGCGGCGTT-CTACTTAAAGGTGTGTTTCGAATCACCGAGAGCCTC 297 | ||||||||||||||||||| | | |||||||||||||| ||||||| ||||||| ||| Sbjct 239 TGGAGCAGCTACCTGGCGGCGGTAC-ACTTAAAGGTGTGTATCGAATCGCCGAGAGTCTC 297 Query 298 GTCAAAGCTACTGCAGCTACTGTTACTA--TGGCCTTAACTGATCAACGGGTTCAAGAAG 355 ||||||||||||||||||| | || | | |||||||||| |||||||||||||||||| Sbjct 298 GTCAAAGCTACTGCAGCTAGT-TT-CGAGATGGCCTTAACCAATCAACGGGTTCAAGAAG 355 Query 356 ATTCCAAAACAGCATTGTGGATACCTTATTTATATGTGAATCCAGCAGATCCAATATGTG 415 |||| || ||||||| ||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 356 ATTCTAAGACAGCATCGTGGATACCTTATATATATGTGAATCCAGCAGATCCAATTTGTG 415 Query 416 CAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGATCGGAGCAAGCCACA 475 |||||||||| |||||||||| |||||||| |||||||||||||||||||||||| | | Sbjct 416 CAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTAAGATCGGAGCAAGTAAAA 475 Query 476 TCGAGAGAATCGGTTCTAGA-AGCTCATTTAGAAATCCATGGACCCGAAGAATAGGAAca 534 |||||| || |||||||||| | |||||||||| || ||||| ||| ||||||||||| Sbjct 476 TCGAGAAAACCGGTTCTAGACAT-TCATTTAGAACTCAATGGAAACGAGGAATAGGAACA 534 Query 535 tcatcatcatcatcatcaCCACTGTCTGATTTGTCAATGGAACCTCTTCACCTTCTTCCA 594 |||||| | || | | ||| ||||||||||||||||||||||||||||||||| Sbjct 535 TCATCA-C--CA-C-T-------GTCCGATTTGTCAATGGAACCTCTTCACCTTCTTCCA 582 Query 595 TCAGCAGATATGACTGTAAACAAGAACAAATCG-GCTTCGTCTATGGCAGCTCATGGGCT 653 ||||||||||||||| | ||||||||||||||| | ||||||||||| |||||||||||| Sbjct 583 TCAGCAGATATGACTATCAACAAGAACAAATCGTG-TTCGTCTATGGTAGCTCATGGGCT 641 Query 654 TCACCAATGGTGGGAGCAAGACTCCGTCCTAAGGAAAAATTGGAAAAACTGTTTGATTAG 713 |||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||| Sbjct 642 TCACCAATGGTGGGAGCAAGACTCGGTCCTAAGGAAAAATTGGAAAAGCTGCTTAATTAG 701 Query 714 GCCCGATCCTGGAGACAAATCTTGAA-G-AGTGCATCAAATGATA 756 |||||| |||| || ||||||||||| | | |||||||||||||| Sbjct 702 GCCCGACCCTGAAGGCAAATCTTGAAAGGA-TGCATCAAATGATA 745 > Ahg941961 jgi|Araly1|941961|scaffold_602505.1 Length=1053 Score = 503 bits (272), Expect = 1e-141 Identities = 558/689 (81%), Gaps = 47/689 (7%) Strand=Plus/Plus Query 42 CCTCCATCAAGGCCCCAGGACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAA 101 ||||||||| ||| ||| |||| |||||||||| ||| |||||| | || | ||||| Sbjct 340 CCTCCATCATGGCAGTAGGTCTATGCACGCCATACGAGCAATCCGCAATGTGGTGGACAA 399 Query 102 ACACAGCGAATCAGCTATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCT 161 ||| | | | |||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 400 ACATAACCATTCAGCTATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGTT 459 Query 162 GGCCGGGAAGACCATGAAAA-TTTCTGGAT-TCCTTC-TCGAGAGTTACATATTCAACCC 218 ||| || |||||||||| | |||| |||| | ||| |||| ||||||||||||||||| Sbjct 460 GGCTGGAAAGACCATGACACGTTTC-GGATAT--TTCCTCGAAAGTTACATATTCAACCC 516 Query 219 ACCCATCATA-TCTATTCCTCTAGAGCAGCTACCTGGCGGCGTTCTACTTAAAGGTGTGT 277 ||||||| | |||||||||||||| ||||||||||| || | | | ||||||||| ||| Sbjct 517 ACCCATC-TCGTCTATTCCTCTAGAACAGCTACCTGGGGGAGATATGCTTAAAGGTATGT 575 Query 278 TTCGAATCACCGAGAGCCTCGTCAAAGCTACTGCAGCTACTGTTACTATGGCCTTAACTG 337 ||| ||||||| |||| ||||||||||||| | ||| | | | || ||||||| | Sbjct 576 TTCAAATCACCAAGAGTGTCGTCAAAGCTACCGTAGC--C----A-T-TG-CCTTAACCG 626 Query 338 ATCAACGGGTTCAAGAAGAT--TCCAAAA-CAGCATTGTGGATACCTTATTTATATGTGA 394 ||| || ||||||||||| ||||||| |||||| |||||||||||||||||||||| Sbjct 627 ATCTACATGTTCAAGAAGAAGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGA 686 Query 395 ATCCAGCAGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGT 454 || |||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||| Sbjct 687 ATTCAGCAGATCCAATATGTGCAGGATTCATCGATTACTTCAAACGCAAAACCTTCATGT 746 Query 455 CTAAGATCGGAGCAAGCCACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCC 512 |||||||||| |||||| | ||||||| || | |||||| ||| | ||| |||| || Sbjct 747 CTAAGATCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAG-TCAGTTAGGTGTCT 804 Query 513 ATGGACCCGAA-GAATAGGAAcatcatcatcatcatcatcaCCACTGTCTGATTTGTCAA 571 || | | |||| ||| ||||| | ||||||||| || | |||||||||| Sbjct 805 ATTG-CTCGAAAGAAAAGGAA-A--ATCATCATCGTC---------G---GATTTGTCAA 848 Query 572 TGGAACCTCTTCACCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTT 631 ||||||||||||||||||||| ||||||||||||| ||| |||||||||||| | || Sbjct 849 CGGAACCTCTTCACCTTCTTCCTTCAGCAGATATGATTGTCAACAAGAACAAACCTACTA 908 Query 632 CGTCTATGGCAGCTCATGGGCTTCACCAATGGTGGGAGCAAGACTCCGT-C-CTAAGGAA 689 |||||||| |||| ||||| ||||| || |||||||||| |||| || | | || ||| | Sbjct 909 CGTCTATGACAGCGCATGGACTTCATCAGTGGTGGGAGCGAGAC-CC-TACTCTGAGGGA 966 Query 690 AAATTGGAAAAACTGTTTG-ATTAGGCCC 717 ||||||| ||| ||| | | ||||| ||| Sbjct 967 AAATTGGGAAAGCTGCT-GCATTAGACCC 994 > Ahg351441 jgi|Araly1|351441|fgenesh1_pg.C_scaffold_6002034 Length=1128 Score = 475 bits (257), Expect = 2e-133 Identities = 581/729 (80%), Gaps = 56/729 (8%) Strand=Plus/Plus Query 1 ATGCCTGATGTGAAACTTGACATCCGATGCATCTT-AGATAACCTCCATCAAGGCCCCAG 59 ||| |||||||||||| | || || || || ||| | | | ||||||| |||| || Sbjct 403 ATGACTGATGTGAAACATAACCTCAAATTCAGCTTCA-ACACCCTCCATGAAGGTGGTAG 461 Query 60 GACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAAACACAGCGAATCAGCTAT 119 | || | || ||||||| ||| || ||| |||| | || ||||||| | | |||||||| Sbjct 462 GTCTTTGCAGGCCATACGAGCAATACGCAATATGGTGGAAAAACACAACCATTCAGCTAT 521 Query 120 CTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCCGGGAAGACCATGAA 179 ||||| |||||||||||||||||||||||||||| |||| |||| || |||||||||| Sbjct 522 ATGGCTCGCTGGACACTCTTTGGGAGCCGCCCTAGCGTTGTTGGCTGGAAAGACCATGAC 581 Query 180 AA-TTTCTGGATTCCTTCTCGAGAGTTACATATTCAACCCACCCATCATA-TCTATTCCT 237 || ||| ||||||||| ||||| |||||||||||||||||||||||| | | ||||||| Sbjct 582 AAGTTT-TGGATTCCTCCTCGAAAGTTACATATTCAACCCACCCATC-TCGTGTATTCCT 639 Query 238 CTAGAGCAGCTACCTGGCGGCGTTCT-ACTTAAAGGTGTGTTTCGAAT-CACCGAGAGCC 295 ||||||||| ||||||| || | ||||||||| ||||| ||| |||| ||| | Sbjct 640 CTAGAGCAGTTACCTGGGGGAAAAAAGA-TTAAAGGTGCGTTTC-AATTCACCAAGA-CT 696 Query 296 -TCGTCAAAGCTACTGCAGCTACTGTTACTATGGCCTTAACTGATCAACGGGTTCAAGAA 354 |||||||||| || | | || | | |||| |||||| |||| | |||||||||| Sbjct 697 GTCGTCAAAGCCAC--C-G-TA--GC--C-ATGGTCTTAACCGATCTTCAGGTTCAAGAA 747 Query 355 GAT--TCCAAAA-CAGCATTGTGGATACCTTATTTATATGTGAATCCAGCAGATCCAATA 411 || ||||||| |||||| ||||||||||||||||||||||| |||| |||||||||| Sbjct 748 GACGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGAACCCAGAAGATCCAATA 807 Query 412 TGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGATCGGAGCAAGC 471 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 808 TGTGCAGGATACATTGATTACTTCAAACACAAAACCTTCATGTCTAAGATCGGTGCAAGC 867 Query 472 CACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCCATGGACCCGAAGAATAG 529 | ||||||| || | ||| || ||| | ||| |||| | || || || | | | Sbjct 868 AAAATCGAGA-AAGCCGGTGCTGGAAAG-TCAGTTAGGAGTCTATTGAT--G--G----G 917 Query 530 GAAcatcatcatcatcatcatcaCCACTGTCTGATTTGTCAATGGAACCTCTTCACCTTC 589 || | |||||||||||| | |||||||||| ||||||||||||||||| Sbjct 918 -AA-A--ATCATCATCATC---------G---GATTTGTCAACGGAACCTCTTCACCTTC 961 Query 590 TTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTTCGTCTATGGCAGCTCATG 649 |||||||||||||||||| |||||||||||||||| || || ||||||| ||||||||| Sbjct 962 TTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGTCTATGACAGCTCATG 1021 Query 650 GGCTTCACCAATGGTGGGAGCAAGACTCCGTCC-TAAGGAAAAATTGGAAAAACTGTTTG 708 | ||||| ||||||||||||| |||||| | || | ||| |||||||| ||| ||||| | Sbjct 1022 GACTTCATCAATGGTGGGAGCGAGACTCGG-CCATGAGGGAAAATTGGGAAAGCTGTT-G 1079 Query 709 -ATTAGGCC 716 |||||||| Sbjct 1080 CATTAGGCC 1088 > Ahg941960 jgi|Araly1|941960|scaffold_602504.1 Length=422 Score = 291 bits (157), Expect = 9e-78 Identities = 297/360 (83%), Gaps = 28/360 (8%) Strand=Plus/Plus Query 345 GGTTCAAGAAGA--TTCCAAA-ACAGCATTGTGGATACCTTATTTATATGTGAATCCAGC 401 |||||||||||| |||||| | ||||| ||||||||||||||||||||| | ||||| Sbjct 24 GGTTCAAGAAGACGATCCAAACAAAGCATCATGGATACCTTATTTATATGTGGACCCAGC 83 Query 402 AGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGAT 461 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 84 CGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAAAATTCATGTCTAAGAT 143 Query 462 CGGAGCAAGCCACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCCATGGACC 519 ||| |||||| | ||||||| || | |||||| ||| | ||| |||| || || | | Sbjct 144 CGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAG-TCAGTTAGGTGTCTATTG-CT 200 Query 520 CGAA-GAATAGGAAcatcatcatcatcatcatcaCCACTGTCTGATTTGTCAATGGAACC 578 |||| ||| ||||| | ||||||||| || | |||||||||| |||||| Sbjct 201 CGAAAGAAAAGGAA-A--ATCATCATCGTC---------G---GATTTGTCAACGGAACC 245 Query 579 TCTTCACCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTTCGTCTAT 638 ||||||||||||||| ||||||||||||| ||| |||||||||||| | || ||||||| Sbjct 246 TCTTCACCTTCTTCCTTCAGCAGATATGATTGTCAACAAGAACAAACCTACTACGTCTAT 305 Query 639 GGCAGCTCATGGGCTTCACCAATGGTGGGAGCAAGACTCCGTC-CTAAG-GAAAAATTGG 696 | |||||||||||||||||||||||||||||| |||||| ||| || || | ||| |||| Sbjct 306 GACAGCTCATGGGCTTCACCAATGGTGGGAGCGAGACTC-GTCACTGAGAGCAAA-TTGG 363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37779810747 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5