BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24210.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894311 jgi|Araly1|894311|Al_scaffold_0006_2307 780 0.0
> Ahg894311 jgi|Araly1|894311|Al_scaffold_0006_2307
Length=936
Score = 780 bits (422), Expect = 0.0
Identities = 564/630 (90%), Gaps = 19/630 (3%)
Strand=Plus/Plus
Query 226 GGAACAATTTGTATCACCGAACCACAGTGGCCTCATGTTTGGTGCAAGGAGTTTACGCAA 285
||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 9 GGAACAATTTGTACCACCGAACCACATTGATGTCATGTTTGGTGCAAGGAGTTTACGCAA 68
Query 286 AGGAAAGAGACAGGGAAAACAACCGAAATGGTTCCGAGTCATTAGCCACACCTTGGTGGA 345
||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 69 TGGAAAGAGACA-GGAAAAAAAACGAAATGGTTCCGAGTCATTAGCCACACCTTGGTGGA 127
Query 346 AGAGTTTCAACTTCACTTTAGATGAAAGTGAAATCCTATATGACGCATTTGACGGCTCCA 405
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 128 AAAGTTTCAACTTCAGTTTAGATGAAAGTGAAATCCTATATGACGCACGTGACGGCTCCA 187
Query 406 TATACGGTGCTGTCTTCCAAAACATGATCAATTATGAGAATACCCCGAACTCGATAGTAG 465
||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | | |||
Sbjct 188 TATACGGTGCTGTCTTCGAAAACGTGATCAATTATGAGAATACCCCGGACTTG--A-TAG 244
Query 466 TACCTCCGCGTTACGTGATTGCGTTACGGGGAACTGTCCCAAGTGATGTGAGTGATTG-G 524
|||||||||||||||||||||| ||||| ||||||| ||||| | | ||| ||| || |
Sbjct 245 TACCTCCGCGTTACGTGATTGCATTACGCGGAACTGCCCCAACT-A--TGAATGA-TGTG 300
Query 525 ATACATAACAGCCGTATT-GTACTCGAGAAACTCCATGGCGGGGGTAAG-CAT-ATGCAT 581
||||||||| ||| || | |||||| |||||| ||| | || | | | | ||||
Sbjct 301 TTACATAACATTCGT-TTACCATTCGAGACCCTCCATCACGGAGATAGGTC-TCA-GCAT 357
Query 582 GTCATTAGAA-AAATCTATTCTTTGGTGGCCAAACACGGAAACACAGCTGTCTGGATCGC 640
|||| | ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 GTCACT-GAAGAAATCCATTCTTTTGTGGCCAAACACGGAAACACAGCTGTCTGGATCGC 416
Query 641 TGGACACTCTTTAGGAGCTGGCCTGGCACTACTCGCGGGAAAGGACATGGCCATGTCTGG 700
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 TGGACATTCTCTAGGAGCTGGCCTGGCACTACTCGCCGGAAAGGACATGGCCATGTCTGG 476
Query 701 ACTCCCTGTTGAGGCTTACATCTTCAACCCACCTATCTCCTTGATTCCTCTAGAGCAGTG 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACTCCCTGTTGAGGCTTACATCTTCAACCCACCTATCTCCTTGATTCCTCTAGAGCAGTA 536
Query 761 CGGTTACAATCACGA-ACTTAATTTTGTGTATCGACTCACCAGGGATCTCTTCAAAGCTG 819
||||||||||||| | ||||||| |||||||||| | ||||||||| ||||||||||||
Sbjct 537 CGGTTACAATCAC-ACACTTAATAGTGTGTATCGATTTACCAGGGATATCTTCAAAGCTG 595
Query 820 GCATAGCCAAAGTCGTAGACCTTGATGAGG 849
|||||||||||||| |||||||||||||||
Sbjct 596 GCATAGCCAAAGTCCTAGACCTTGATGAGG 625
Score = 455 bits (246), Expect = 4e-127
Identities = 280/296 (95%), Gaps = 3/296 (1%)
Strand=Plus/Plus
Query 909 CAA-TCTGATGTAATATGCTCAGAATATATTGGTTATTTCAATCACGTAGTCA-CTATGA 966
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 642 CAATTCTGATGTAATATGCTCAGAATATATTGGTTATTTCAATCACGTAGTCAAC-ATGA 700
Query 967 CGGAGGCGGGACTCGGTGAGATTTCGAGGTTGGCTAGTGGATACTCAGTTAGGCGTATGT 1026
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 701 CGGAGGCGGGACTCGGTGAGATTTCGAGGTTGGCTAATGTATACTCAGTTAGGCGTATGT 760
Query 1027 TATTCGGAGACGGAGAAAATTGGTCCTCGTCTTCTACACCAGATCATCTTCATTTTCTTC 1086
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 761 TCCTCGGAGACGGAGAAAATTGGTCCTCGTCTTCTTCACCAGATCATCTTCATTTTCTTC 820
Query 1087 CGTCGGCCTTTATGATTGTAAACAAGACTGAAGCGTCGGAGTTTTATAATAAACATGGGA 1146
|||||||||||||||| ||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 821 CGTCGGCCTTTATGATGGTAAACAAGACTGAATCGTCGGAGTTTTACCATAATCATGGGA 880
Query 1147 TTCATCAATGGTGGAATCATATGCTTAAACAATCTACAACGTTTAGTTCATACTAG 1202
|||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct 881 TTCATCAATGGTGGAATCATATGCTTCAACAATTTACAACGTTTAATTCATACTAG 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5