BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24220.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351441 jgi|Araly1|351441|fgenesh1_pg.C_scaffold_6002034 1759 0.0
Ahg894309 jgi|Araly1|894309|Al_scaffold_0006_2305 1158 0.0
Ahg941961 jgi|Araly1|941961|scaffold_602505.1 784 0.0
Ahg489279 jgi|Araly1|489279|fgenesh2_kg.6__2413__AT5G24190.1 501 4e-141
Ahg941960 jgi|Araly1|941960|scaffold_602504.1 390 1e-107
> Ahg351441 jgi|Araly1|351441|fgenesh1_pg.C_scaffold_6002034
Length=1128
Score = 1759 bits (952), Expect = 0.0
Identities = 1074/1133 (95%), Gaps = 7/1133 (1%)
Strand=Plus/Plus
Query 1 ATGGGACGAGGTTCTCTCAGGAAATTGATAGGAGGAGGAGGAGAGATGGCCTCAGACTCA 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 1 ATGGGACGAGGTTCTCTCAGGAAATTGAT---AGGAGGAGGAGCGATGGCCTCAGACCCA 57
Query 61 GATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAAT 117
Query 121 TCGTACCATCGAACGTCAGTAGCATCAAGTTTAGTAAATGGAGTGTACACAATGGAACGG 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 TCGTACCATCGAACGTCAGTAGCATCAAGTTTGGTAAATGGAGTGTACACAATGGAACGG 177
Query 181 GACAAGCAAGAGAAACGGGTAGGTTCTGAATCACGAGCCATGCCCTGGTGGGATTTTTTC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 GACAAGCAAGAGAAACGGGTAGGTTCCGAATCACGAGCCATGCCCTGGTGGGATTTTTTC 237
Query 241 AACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGACAGCTCCATATACGGTGCTGTT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 AACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGATAGCTCCATATACGGTGCTGTT 297
Query 301 TTCGAATACAAGCTCTCCAACCTTTGCCAAAATACCTCACATGCGAAAGCGCCTCCACGT 360
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 298 TTCGAATACAAGCTCTCCAACCTTTGCCAAAATACCTCTCATGTGAAAGCACCTCCACGT 357
Query 361 TATGTGATTGCATTCCGCGGCACGATCCTAGAGTCAGATACTTGGATGACTGATGTGAAA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 TATGTGATTGCATTCCGCGGCACGATCCTAGAGTCAGAAACTTGGATGACTGATGTGAAA 417
Query 421 CATAATCTCAAATTTAGCTTCAACACCCTCCATGAAGGCGGTAGGTCTTTGCAGGCCATA 480
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 CATAACCTCAAATTCAGCTTCAACACCCTCCATGAAGGTGGTAGGTCTTTGCAGGCCATA 477
Query 481 CGAGCAATACGCAGTATGGTGGACAAACACAGTGAAGCAGCTATCTGGCTTGCTGGACAC 540
||||||||||||| ||||||||| ||||||| | ||||||| ||||| |||||||||
Sbjct 478 CGAGCAATACGCAATATGGTGGAAAAACACAACCATTCAGCTATATGGCTCGCTGGACAC 537
Query 541 TCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCATGACAAGTTTTGGATTCCTC 600
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 538 TCTTTGGGAGCCGCCCTAGCGTTGTTGGCTGGAAAGACCATGACAAGTTTTGGATTCCTC 597
Query 601 CTCGAAAGTTACATCTTCAACCCACCCATCTCGTGTATTCCTCTAGAGCAGTTACCTGGG 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCGAAAGTTACATATTCAACCCACCCATCTCGTGTATTCCTCTAGAGCAGTTACCTGGG 657
Query 661 GGaaaaaaaaTTAAAGGTGTGTTTCAATTCACCAAGACTGTCGTCAAAGCTACCGTAGCT 720
|||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 658 GGAAAAAAGATTAAAGGTGCGTTTCAATTCACCAAGACTGTCGTCAAAGCCACCGTAGCC 717
Query 721 ATGGTCTTAACCGATCTACAGGTTCAAGAAGACGATCCAAAAACAGCATCATGGATACCT 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGGTCTTAACCGATCTTCAGGTTCAAGAAGACGATCCAAAAACAGCATCATGGATACCT 777
Query 781 TATTTATACGTGAACCCAGCAGATCCAATATGTGCGGGATACATCGATTACTTCAGACAC 840
|||||||| |||||||||| ||||||||||||||| |||||||| |||||||||| ||||
Sbjct 778 TATTTATATGTGAACCCAGAAGATCCAATATGTGCAGGATACATTGATTACTTCAAACAC 837
Query 841 AAAACCTTCATGTCTGAGATAGGAGCAAGCCACATCGAGAGAATC-GGTGCTGGAAAGTC 899
||||||||||||||| |||| || |||||| | ||||||| || | ||||||||||||||
Sbjct 838 AAAACCTTCATGTCTAAGATCGGTGCAAGCAAAATCGAGA-AAGCCGGTGCTGGAAAGTC 896
Query 900 AGTTAGGAGTCTATTGATGGGAAAATCATCATCATCAGATTTGTCAACGGAACCTCTTCA 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 897 AGTTAGGAGTCTATTGATGGGAAAATCATCATCATCGGATTTGTCAACGGAACCTCTTCA 956
Query 960 CCTTCTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGGT-TATGACAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 957 CCTTCTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAG-TCTATGACAG 1015
Query 1019 CTCATGGACTTCATCAATGGTGGGAGCGAGACTCGGCCATGAGGGAAAATTGGGAAAGCT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTCATGGACTTCATCAATGGTGGGAGCGAGACTCGGCCATGAGGGAAAATTGGGAAAGCT 1075
Query 1079 GCTGCATCAGACCTTACCCTGACGGCAAATTGGAGCAACTGACCATACAATAA 1131
| ||||| || |||| | ||| | ||||||| ||||| |||||||| |||||
Sbjct 1076 GTTGCATTAGGCCTTTCTATGAAGACAAATTGCAGCAATTGACCATAGAATAA 1128
> Ahg894309 jgi|Araly1|894309|Al_scaffold_0006_2305
Length=1125
Score = 1158 bits (627), Expect = 0.0
Identities = 980/1147 (85%), Gaps = 38/1147 (3%)
Strand=Plus/Plus
Query 1 ATGGGACGAGGTTCTCTCAGGAAATTGA-TAGGAGGAGGAGGAGAGATGGCCTCAGACTC 59
||||||||||| || ||| |||| || |||||||| | || ||| || |||||
Sbjct 1 ATGGGACGAGG--CT-TCA-GAAAAAGATTAGGAGGA--A-AAGCGATAGCTTCAGA--- 50
Query 60 AGATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAA 119
||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 51 AGATACAGATACTTTCAGCATTTTTGGCCCCTTCCATCTTACATCTATTGACTGGACCAA 110
Query 120 TTCGTACCATCGAACGTCAGTAGCATCAAGTTTAGTAAATGGAGTGTACACAATGGAACG 179
| ||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||| |
Sbjct 111 TCCGTACCATCGAACTTCAGTGGCATCAAGTTTGGTAAATGGAGTGTACACATTGGAA-G 169
Query 180 -GGACAAGCAAGAGAAACGGGTAGGTTCTGAATCACGAGCCATGCCCTGGTGGGATTTTT 238
||||| || ||| ||||||||||||||||| | | ||||| |||||||||||| ||||
Sbjct 170 CGGACAGGCTTGAGGAACGGGTAGGTTCTGAAGCTCTAGCCAAGCCCTGGTGGGAATTTT 229
Query 239 TCAACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGACAGCTCCATATACGGTGCTG 298
|| ||||| ||||| |||||||||||| |||||| | |||||||||||||| |||||
Sbjct 230 TCCACTTCACTTTACTCGAAACCTTGAACGACGA-T--GACAGCTCCATATATGGTGCCA 286
Query 299 TTTTCGAATACAAGCTCTCCAACCTTTGCCAAAATACCTCACATGCGAAAGCGCCTCCAC 358
||||||||||| |||| | |||||||| | |||||||| | |||| |||| | |||||
Sbjct 287 TTTTCGAATACGAGCTATACAACCTTTACGAAAATACCCCTCATGTGAAA--G-TTCCAC 343
Query 359 GTTATGTGATTGCATTCCGCGGCACGATCCTAGAGTCAGATACTTGGATGACTGATGTGA 418
| ||||||||||| |||||||||||| | || || | | ||||||| | |||| |||
Sbjct 344 GCTATGTGATTGCCTTCCGCGGCACGGTTTTAAAGGGAAAAACTTGGAAGTTTGATTTGA 403
Query 419 AACATAATCTCAAATTTAGCTTCAACACCCTCCATGAAGGCGGTAGGTCTTTGCAGGCCA 478
||| | | ||||||| | |||||||||||||||| |||| ||||||| || | |||
Sbjct 404 AACTTGACCTCAAATGCATCTTCAACACCCTCCATCAAGGTAATAGGTCTATGTACGCCC 463
Query 479 TACG-A-GCAATACGCAGTATGGTGGACAAACACAGTGAAGCAGCTATCTGGCTTGCTGG 536
| | | ||| | ||| |||||||||| ||||||| | |||||||||||||||||||
Sbjct 464 T--GAACGCAGTCCGCCGTATGGTGGATAAACACAACCATTCAGCTATCTGGCTTGCTGG 521
Query 537 ACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCATGACAAGTTTTGGATT 596
|||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct 522 ACACTCATTGGGAGCCGCCCTAGTGTTGTTGGCTGGAAAGACCATGACTAGGGTTGGATT 581
Query 597 CCTCCTCGAAAGTTACATCTTCAACCCACCCATCTCGTGTATTCCTCTAGAGCAGTTACC 656
| |||||||||||||||| || |||||||||||||| | |||||||||||||||| ||||
Sbjct 582 CTTCCTCGAAAGTTACATATTTAACCCACCCATCTCTTCTATTCCTCTAGAGCAGCTACC 641
Query 657 TGGGGGaaaaaaaaTTAAAGGTGTGTTTCAATTCACCAAGACTGTCGTCAAAGCTACCGT 716
||||| | | ||||||||||||||||||| || |||| | |||||||||||| |||||
Sbjct 642 CGGGGGCGATATAATTAAAGGTGTGTTTCAAATCGCCAAAAGTGTCGTCAAAGCCACCGT 701
Query 717 AGCTATGGTCTTAACCGATCTACAGGTT-CAAGAAGACGATCCAAAAACAGCATCATGGA 775
||| |||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 702 AGCCATGGCCTTAACCGATCTACAGGTTCCAA-TAGACGATCCAAAGACAGCATCATGGA 760
Query 776 TACCTTATTTATACGTGAACCCAGCAGATCCAATATGTGCGGGATACATCGATTACTTCA 835
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 761 TACCTTATTTATACGTGAATCCAGCAGATCCAATTTGTGCAGGATACATCGATTACTTCA 820
Query 836 GACACAAAACCTTCATGTCTGAGATAGGAGCAAGCCACATCGAGAGAATCGGTGCTGGAA 895
||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||| |||
Sbjct 821 GACACAAAACCTTCATGTCTGAGATCGGAGCAAGCGACATTGAGAGAACCGGTGCTAGAA 880
Query 896 AGTCAGTTAGGAGTCTATTGATGGGAA-AAT--------CATCATCATCAGATTTGTCAA 946
|||||||||||||||||||| |||||| || ||| |||||| |||||||||
Sbjct 881 AGTCAGTTAGGAGTCTATTGGTGGGAAGAAAAGGAAAAACATTATCATCGGATTTGTCAT 940
Query 947 CGGAACCTCTTCACCTTCTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTA 1006
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 941 CGGAACCTCTTCACCTTCTTCCATCAGCGGATATGACTGTAAACAAGAACAAACCGACTA 1000
Query 1007 AGGT-TATGACAGCTCATGGACTTCATCAATGGTGGGAGCGAGACTCGGC-CATGAGGGA 1064
|| | || |||||||||||||||||| ||||||||||||||||||||| | | ||||||
Sbjct 1001 AG-TCTACGACAGCTCATGGACTTCACCAATGGTGGGAGCGAGACTCGACAC-TGAGGGC 1058
Query 1065 AAATTGGGAAAGCTGCTGCATCAGACCTTACCCTGACGGCAAATTGGAGCAACTGACCAT 1124
||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||| |
Sbjct 1059 AAATTGGGAAAGCTGCTGCATTAGACCTTACCCTGAAGACAAATTGGAGCAATTGACCCT 1118
Query 1125 ACAATAA 1131
||||||
Sbjct 1119 CCAATAA 1125
> Ahg941961 jgi|Araly1|941961|scaffold_602505.1
Length=1053
Score = 784 bits (424), Expect = 0.0
Identities = 613/703 (87%), Gaps = 17/703 (2%)
Strand=Plus/Plus
Query 442 AACACCCTCCATGAAGGCGGTAGGTCTTTGCAGGCCATACGAGCAATACGCAGTATGGTG 501
|||||||||||| | ||| |||||||| |||| |||||||||||||| |||| | |||||
Sbjct 335 AACACCCTCCATCATGGCAGTAGGTCTATGCACGCCATACGAGCAATCCGCAATGTGGTG 394
Query 502 GACAAACACAGTGAAGCAGCTATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTG 561
|||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 395 GACAAACATAACCATTCAGCTATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTG 454
Query 562 TTGCTGGCTGGAAAGACCATGACAAGTTTTGGAT-TCCTCCTCGAAAGTTACATCTTCAA 620
||| |||||||||||||||||||| |||| |||| | |||||||||||||||| |||||
Sbjct 455 TTGTTGGCTGGAAAGACCATGACACGTTTCGGATATT-TCCTCGAAAGTTACATATTCAA 513
Query 621 CCCACCCATCTCGTGTATTCCTCTAGAGCAGTTACCTGGGGGaaaaaaaaTTAAAGGTGT 680
|||||||||||||| |||||||||||| ||| ||||||||||| | | |||||||| |
Sbjct 514 CCCACCCATCTCGTCTATTCCTCTAGAACAGCTACCTGGGGGAGATATGCTTAAAGGTAT 573
Query 681 GTTTCAATTCACCAAGACTGTCGTCAAAGCTACCGTAGCTATGGTCTTAACCGATCTACA 740
||||||| ||||||||| ||||||||||||||||||||| || | |||||||||||||||
Sbjct 574 GTTTCAAATCACCAAGAGTGTCGTCAAAGCTACCGTAGCCATTGCCTTAACCGATCTACA 633
Query 741 GGTTCAAGAAGACGATCCAAAAACAGCATCATGGATACCTTATTTATACGTGAACCCAGC 800
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 634 TGTTCAAGAAGAAGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGAATTCAGC 693
Query 801 AGATCCAATATGTGCGGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGAT 860
||||||||||||||| |||| |||||||||||||| || |||||||||||||||| ||||
Sbjct 694 AGATCCAATATGTGCAGGATTCATCGATTACTTCAAACGCAAAACCTTCATGTCTAAGAT 753
Query 861 AGGAGCAAGCCACATCGAGAGAATC-GGTGCTGGAAAGTCAGTTAGGAGTCTATTGAT-G 918
|| |||||| | ||||||| || | ||| ||||||||||||||||| |||||||| | |
Sbjct 754 CGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAGTCAGTTAGGTGTCTATTGCTCG 812
Query 919 ---G----G-AAAATCATCATCATCAGATTTGTCAACGGAACCTCTTCACCTTCTTCCAT 970
| | |||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 813 AAAGAAAAGGAAAATCATCATCGTCGGATTTGTCAACGGAACCTCTTCACCTTCTTCCTT 872
Query 971 CAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGGT-TATGACAGCTCATGGACTT 1029
|||||||||||||||| |||||||||||||| |||| | | ||||||||| |||||||||
Sbjct 873 CAGCAGATATGATTGTCAACAAGAACAAACCTACTACG-TCTATGACAGCGCATGGACTT 931
Query 1030 CATCAATGGTGGGAGCGAGACTCGGC-CATGAGGGAAAATTGGGAAAGCTGCTGCATCAG 1088
||||| ||||||||||||||| | | | |||||||||||||||||||||||||||| ||
Sbjct 932 CATCAGTGGTGGGAGCGAGACCCTACTC-TGAGGGAAAATTGGGAAAGCTGCTGCATTAG 990
Query 1089 ACCTTACCCTGACGGCAAATTGGAGCAACTGACCATACAATAA 1131
||| | || | ||||||||| | ||| ||||||||||||||
Sbjct 991 ACCCAAGTCTAAAGGCAAATTGCACCAATTGACCATACAATAA 1033
Score = 412 bits (223), Expect = 2e-114
Identities = 276/301 (92%), Gaps = 5/301 (2%)
Strand=Plus/Plus
Query 1 ATGGGACGAGGTTCTCTCAGGA-AATTGATAGGAGGAGGAGGAGAGATGGCCTCAGACTC 59
||||||||||||||||||| || || |||| | |||||||||| | |||||| ||||||
Sbjct 23 ATGGGACGAGGTTCTCTCA-GACAAATGAT--G-GGAGGAGGAGTGGTGGCCTTAGACTC 78
Query 60 AGATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAA 119
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 79 AGATAGAGACATTTTCAGCATCTCTGGCCCCTTCCATCTTACATCTATTGATTGGAACAA 138
Query 120 TTCGTACCATCGAACGTCAGTAGCATCAAGTTTAGTAAATGGAGTGTACACAATGGAACG 179
|||||||||||| || ||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 139 TTCGTACCATCGGACCTCAGTAGCATCAAGTTTGGTAAATGGAGTGTACATATTGGAACG 198
Query 180 GGACAAGCAAGAGAAACGGGTAGGTTCTGAATCACGAGCCATGCCCTGGTGGGATTTTTT 239
||||| |||||||| |||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 199 GGACAGGCAAGAGAGACGGGTAGGTTCCGGATCACTAGCCATGCCCTGGTGGGATTTTTT 258
Query 240 CAACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGACAGCTCCATATACGGTGCTGT 299
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 259 CAACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGACGGCTCCATATATGGTGCCGT 318
Query 300 T 300
|
Sbjct 319 T 319
> Ahg489279 jgi|Araly1|489279|fgenesh2_kg.6__2413__AT5G24190.1
Length=959
Score = 501 bits (271), Expect = 4e-141
Identities = 589/736 (80%), Gaps = 48/736 (7%)
Strand=Plus/Plus
Query 406 ATGACTGATGTGAAACAT-A-ATCTCAAATTTAGCTTCAACACCCTCCATGAAGGCGGTA 463
||| |||||||||||| | | ||| | || | ||| || | |||||||| ||||||
Sbjct 1 ATGCCTGATGTGAAACTTGACATC-C-GATGCATCTTTAATAACCTCCATGGAGGCGGCC 58
Query 464 GGTCTTTGCAGGCCATACGAGCAATAC-GCAG-TATGGTGGACAAACACAGTGAAGCAGC 521
|| || | || ||||||| ||| || | || | |||| | ||||||||||| ||| ||||
Sbjct 59 GGACTATCCACGCCATACAAGCTAT-CAGC-GCTATGATTGACAAACACAGCGAATCAGC 116
Query 522 TATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCAT 581
||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 117 TATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGATGGCCGGGAAGACCAT 176
Query 582 GA-CAAGTTT-TGGATTCCTCCTCGAAAGTTACATCTTCAACCCACCCATC-T--CGTGT 636
|| || ||| ||||||||||||||| |||||||| ||||||||||||||| | | |||
Sbjct 177 GAACA--TTTATGGATTCCTCCTCGAGAGTTACATATTCAACCCACCCATCATAAC-TGT 233
Query 637 ATTCCTCTAGAGCAGTTACCTGGGGGaaaaaaaaTTAAAGGTGTGTTTC-AATTCACCAA 695
| ||||| |||||| ||||||| || | | |||||||||||| || ||| | || |
Sbjct 234 -T-CCTCTGGAGCAGCTACCTGGCGGCGGTACACTTAAAGGTGTGTATCGAAT-CGCCGA 290
Query 696 GACTGTCGTCAAAGCTACCGTAGCTA-T---G-G-T--C-TTAACCGATCTACAGGTTCA 746
|| | ||||||||||||| | ||||| | | | | | |||||| ||| || ||||||
Sbjct 291 GAGTCTCGTCAAAGCTACTGCAGCTAGTTTCGAGATGGCCTTAACCAATCAACGGGTTCA 350
Query 747 AGAAGACGATCCAAAAACAGCATCATGGATACCTTATTTATACGTGAACCCAGCAGATCC 806
|||||| || || | ||||||| |||||||||||| |||| ||||| |||||||||||
Sbjct 351 AGAAGAT--TCTAAGA-CAGCATCGTGGATACCTTATATATATGTGAATCCAGCAGATCC 407
Query 807 AATATGTGCGGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGATAGGAGC 866
||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 408 AATTTGTGCAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTAAGATCGGAGC 467
Query 867 AAGCCACATCGAGAGAATCGGTGCTGGAAAGTCAGTTAGGAGTCTATTGAT--G-GGAA- 922
||| | ||||||| || |||| || || | ||| |||| | || || || | ||||
Sbjct 468 AAGTAAAATCGAGAAAACCGGTTCTAGACATTCATTTAGAACTCAATGGAAACGAGGAAT 527
Query 923 A--ATCATCATCATCA--G----ATTTGTCAACGGAACCTCTTCACCTTCTTCCATCAGC 974
| | |||||||| || | ||||||||| |||||||||||||||||||||||||||
Sbjct 528 AGGAACATCATCACCACTGTCCGATTTGTCAATGGAACCTCTTCACCTTCTTCCATCAGC 587
Query 975 AGATATGATTGTAAACAAGAACAAACCGACTAAGGT-TATGACAGCTCATGGACTTCATC 1033
|||||||| | | |||||||||||| || | | | |||| ||||||||| ||||| |
Sbjct 588 AGATATGACTATCAACAAGAACAAATCGTGTTCG-TCTATGGTAGCTCATGGGCTTCACC 646
Query 1034 AATGGTGGGAGCGAGACTCGG-CCATGAGGGAAAATTGGGAAAGCTGCTGCATCAGACCT 1092
|||||||||||| |||||||| || | ||| |||||||| ||||||||| || || ||
Sbjct 647 AATGGTGGGAGCAAGACTCGGTCC-TAAGGAAAAATTGGAAAAGCTGCTTAATTAGGCCC 705
Query 1093 TACCCTGACGGCAAAT 1108
||||||| |||||||
Sbjct 706 GACCCTGAAGGCAAAT 721
> Ahg941960 jgi|Araly1|941960|scaffold_602504.1
Length=422
Score = 390 bits (211), Expect = 1e-107
Identities = 316/364 (87%), Gaps = 17/364 (5%)
Strand=Plus/Plus
Query 741 GGTTCAAGAAGACGATCCAAA-AACAGCATCATGGATACCTTATTTATACGTGAACCCAG 799
||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||
Sbjct 24 GGTTCAAGAAGACGATCCAAACAA-AGCATCATGGATACCTTATTTATATGTGGACCCAG 82
Query 800 CAGATCCAATATGTGCGGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGA 859
| |||||||||||||| |||||||| |||||||||| |||||||| ||||||||| |||
Sbjct 83 CCGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAAAATTCATGTCTAAGA 142
Query 860 TAGGAGCAAGCCACATCGAGAGAA-TCGGTGCTGGAAAGTCAGTTAGGAGTCTA-T--T- 914
| || |||||| | ||||||| || |||| ||||||||||||||||| ||||| | |
Sbjct 143 TCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAGTCAGTTAGGTGTCTATTGCTC 201
Query 915 G-ATG----GGAAAATCATCATCATCAGATTTGTCAACGGAACCTCTTCACCTTCTTCCA 969
| | | |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 202 GAAAGAAAAGGAAAATCATCATCGTCGGATTTGTCAACGGAACCTCTTCACCTTCTTCCT 261
Query 970 TCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGGT-TATGACAGCTCATGGACT 1028
||||||||||||||||| |||||||||||||| |||| | | ||||||||||||||| ||
Sbjct 262 TCAGCAGATATGATTGTCAACAAGAACAAACCTACTACG-TCTATGACAGCTCATGGGCT 320
Query 1029 TCATCAATGGTGGGAGCGAGACTCGGC-CATGAGGGAAAATTGGGAAAGCTGCTGCATCA 1087
||| ||||||||||||||||||||| | | |||| | ||||||||| ||| ||||||| |
Sbjct 321 TCACCAATGGTGGGAGCGAGACTCGTCAC-TGAGAGCAAATTGGGAGAGCCGCTGCATTA 379
Query 1088 GACC 1091
||||
Sbjct 380 GACC 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5