BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24230.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941962 jgi|Araly1|941962|scaffold_602506.1 1760 0.0
> Ahg941962 jgi|Araly1|941962|scaffold_602506.1
Length=1153
Score = 1760 bits (953), Expect = 0.0
Identities = 1087/1153 (94%), Gaps = 3/1153 (0%)
Strand=Plus/Plus
Query 93 GATGATTAGGTAGAGATAATATGGAAGAAGAAGATGATGAGGTTATGGTCAGAGAGGGGC 152
|||||| ||||||||| || ||||||||||| |||||||| ||||| || | |||||||
Sbjct 1 GATGATAAGGTAGAGAAAACATGGAAGAAGACGATGATGATGTTATTGTGAAAGAGGGGA 60
Query 153 TAATGGCCTCTCAAAGAGAAATCTTCAGCATTTCTGGTCCAATCCATTTAACTTCCATTG 212
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAATGGCATCTCAAAGAGAAATCTTCAGCATTTCTGGTCCAATCCATTTAACTTCCATTG 120
Query 213 ATTGGAATAATTCTTATCATAGAACCTCGGTGGCATCATGTTTGGTACAAGCAGTGTACA 272
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGGAATAATTCTTACCATAGAACCTCGGTGGCATCATGTTTGGTACAAGCAGTGTACA 180
Query 273 CATTGGAACGAGACAGACAACAAAACAGGATTGGCCTAAAGTCACAAGCCAATCATTGGT 332
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 CATTGGAACGAGACAGACAACAAAACAGGATTGGTCTAAAGTCACAAGCCAATCATTGGT 240
Query 333 GGGAGTTTTTCAACTTCACTTTAGCCGAAACCCTAATCGACGACTCAGACGGATCTATAT 392
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 241 GGGAGTTTTTCAACTTCACTTTAGCCGAAACCCTAATCGACGACTCAGACGCATCCATAT 300
Query 393 ACGGCGCCGTTTTCGAATACAAACATTTCTTCTCCTACAATTACCATCACACCCCTCATT 452
||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| |
Sbjct 301 ACGGCGCCGTTTTTGAATACAAACATTTCTTCTCTTACAATTACCATAATACCCCTCACT 360
Query 453 CGAAACCACCTCCTCGTCACGTGATTGCTTTCCGTGGCACGATCTTGAAACCGCACTCTC 512
||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 361 CGAAACCACCTCCTCGTCACGTGATCGCTTTCCGTGGTACGATCTTGAAACGGCACTCTC 420
Query 513 GGTCACGTGACCTTAAGCTCGACCTACGTTGCATCCGAGACTCTCTCCATGATAGCACTC 572
||||||||||| ||| ||||||||||||||||||||||||| |||||| || ||| |
Sbjct 421 GGTCACGTGACATTAGGCTCGACCTACGTTGCATCCGAGACAGTCTCCACGACAGCTTTA 480
Query 573 GGTTCGTGCATGCCATTCAGGTTATTCAAAGTGCGGTGGCTAAAACTGGTAATGCAGCCG 632
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 481 GGTTCGTGCATGCGGTTCAGGTGATTCAAAGTGCGGTGGCTAAAACTGGTAATGCAGCTG 540
Query 633 TGTGGCTCGCCGGACATTCTCTTGGAGCAGCCGTGGCTTTGCTTGCCGGGAAGATTATGA 692
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 TGTGGCTTGCCGGACATTCTCTTGGAGCTGCCGTGGCTTTGCTTGCCGGGAAGATTATGA 600
Query 693 CAAGGTCTGGTTTTCCTCTTGAGAGTTACTTATTCAATCCTCCTTTCTCGTCTATTCCGA 752
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 601 CGAGGTCTGGTTTTCCTCTTGAGAGTTACTTATTCAATCCTCCTTTCTCGTCGATTCCAA 660
Query 753 TAGAGAAGCTAGTGAAGAGTGAGAAGCTTAAACATGGGGTTCGATTCGCCGGAAGTCTTG 812
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 661 TAGAGAAGCTATTGAAGAGTGAGAAGCTTAAACATGGAGTTCGATTCGCTGGAAGTCTTG 720
Query 813 TTAAAGCCGGAGTTGCCATCGCCGTTAAGGGTCGCCACCATAATAAGGGTCAAGAAGACG 872
| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 721 TAAAAGCCGGAGTAGCCATCGCCGTCAAGGGTCGCCACCATAACAAGGGTCTAGAAGACG 780
Query 873 ATTCGTTCATGAAGTTAGCATCATGGATACCATATTTGTATTTGAATCCGTTAGATACAA 932
|||| || |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 781 ATTCCTTTATGAAGTTAGCATCATGGATGCCATATTTGTATGTGAATCCGTTAGATACAA 840
Query 933 TATGCTCAGAATACATTGGTTACTTCAAGCACAGAAACAAAATGTTTGAGATCGGAGCCG 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TATGCTCAGAATACATTGGTTACTTCAAGCACAGAAACAAAATGTTTGAGATCGGAGCCG 900
Query 993 GTAAAATCGAAAGAATTGCTACGAGGAACTCACTTAGGAGTCTGTTGTCaggaggaggag 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTAAAATCGAAAGAATTGCTACGAGGAACTCACTTAGGAGTCTGTTGTCAGGAGGAGGAG 960
Query 1053 gaggaggTTCA---TCTTCAGATTCTTCTTCAGAGCCTCTTCATCTTTTACCATCGGCAT 1109
||||||| | ||||||||||||| ||||||||||||||||||||| ||||| || |
Sbjct 961 GAGGAGGAGGACCGTCTTCAGATTCTTGTTCAGAGCCTCTTCATCTTTTGCCATCAGCGT 1020
Query 1110 ATATGACGATAAACGCTAGCAAATCGCCGAATTTTAAGAGAGCTCATGGGATTCATCAAT 1169
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1021 ATATGACGATAAACGCTAGCAAATCGCCGGATTTTAAGAGAGCTCATGGGATTCATCAAT 1080
Query 1170 GGTGGGATCCCATGTTTAATGGTGAATATGTTTTGCATCAGTTTAATAACTAACTTCTAC 1229
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1081 GGTGGGATCCCATGTTTAATGGTGAATATGTTTTGCATCAGTTTAATCACTGACTTCTAC 1140
Query 1230 TTTTGTTGCTTCA 1242
||| |||||||||
Sbjct 1141 TTTCGTTGCTTCA 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5