BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24240.1
Length=2380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489282 jgi|Araly1|489282|fgenesh2_kg.6__2416__AT5G24240.1 3459 0.0
> Ahg489282 jgi|Araly1|489282|fgenesh2_kg.6__2416__AT5G24240.1
Length=2241
Score = 3459 bits (1873), Expect = 0.0
Identities = 2127/2249 (95%), Gaps = 19/2249 (1%)
Strand=Plus/Plus
Query 80 AAATAAAATTGAAGAGAGGGGTTTTCGAATTCTCGGAAACTTGGCGAGTAAGTTTTATCG 139
||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAAAAAAACTGAAGAGAGGGGTTTTCGAATTCTCAGAAACTTGGCGAGTAAGTTTTATCG 60
Query 140 AATAACACCAGTTCCGA--T---T-AGATTCTTCGCTTCACGGATTTTTATTCCGAGGTT 193
|||||||||||||| | | ||| |||||||||||||||||||| |||||||
Sbjct 61 ---AACACCAGTTCCGATTTCACTAAGAAGAATCGCTTCACGGATTTTTATTTCGAGGTT 117
Query 194 CTTTGGGATTGATGTGATTACGAGATACATTTCAGCTACGATAATTCGTACGAAAGCCTA 253
||||| |||||||| |||||||||| |||||| ||||||| ||||||| |||||||||||
Sbjct 118 CTTTGCGATTGATGCGATTACGAGAGACATTTTAGCTACGGTAATTCGAACGAAAGCCTA 177
Query 254 ATCATAGGGGGTTTAGGGTTGTCTTAACTTCAATATGAACTTTTGGAAAATATTGATTGG 313
|||||||| |||||||| |||| |||||| | |||||||| ||||| |||||||| ||||
Sbjct 178 ATCATAGGTGGTTTAGGATTGTTTTAACTCCGATATGAACATTTGGCAAATATTGCTTGG 237
Query 314 CAAGATGTGAGTTAGAAAGCTTTTCAGTTCCAGAGTTCCTGAACCCGTGCAGGGACTT-G 372
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
Sbjct 238 CAAGATGTGAGTTAGAAAGCTCTTCAGTTCCAGAGTTCCTGAATCCGTGCAGGAACTTGG 297
Query 373 GTCTTTTCTAAAGCTCACGGGAGAAGAATAAGGGTTGATTCCTGGGATTTCAGCCTTTAT 432
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 298 GTC-TTTCTAAAGCTCACGGGAGAAGAATAA-GGTTGATTCCTGGGATTTCAGCCTTTAT 355
Query 433 TCCCTGTTGAGCTCTCTTCATTCCCAGGAATTTAGGATAGAAGTGTACAGTTGGAATGTC 492
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 T-CCTGTTGAGCTCTCTTCATTCCCAGGAATTTAGGATAGAAGTGTACAGTTGGAATGTC 414
Query 493 AGTTGCTAGTGTAGCGTTGAGTCCAGCCCTGGAGGAACTTGTCAACTTTCCAGGTATTAT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AGTTGCTAGTGTAGCGTTGAGTCCAGCCCTGGAGGAACTTGTCAACTTTCCAGGTATTAT 474
Query 553 TGGACGGTTTGGTTTCAACTTAGACGACCCAATCCTGGTTTTTCTGACTATTGCTGGATC 612
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 475 TGGACGGTTTGGTTTGAACTTAGACGACCCAATCCTGGTTTTTCTCACTATTGCTGGATC 534
Query 613 TGTGATCCCTAAGCGGGTCATGGAGTCAGATTCAATAGCATCTGTGAAGCTAAGGATTCA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TGTGATCCCTAAGCGGGTCATGGAGTCAGATTCAATAGCATCTGTGAAGCTAAGGATTCA 594
Query 673 GAGTATCAAGGGtttttttGTGAAGAAGCAGAAACTTCTGTATGATGGTAGAGAGGTATC 732
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| | |
Sbjct 595 GAGTATCAAGGGGTTTTTTGTGAAAAAGCAGAAACTTCTATATGATGGTAGAGAGCCAAC 654
Query 733 TCGAAATGATTCCCAAATTCGAGATTATGGCCTTGCTGATGGGAAACTGTTGCATTTGGT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCGAAATGATTCCCAAATTCGAGATTATGGCCTTGCTGATGGGAAACTGTTGCATTTGGT 714
Query 793 TATTAGACTTTCAGATCTTCAAGCCATTTCTGTAAGAACTGTTGATGGGAAAGAGTTTGA 852
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TATTAGCCTTTCAGATCTTCAAGCCATTTCTGTAAGAACTGTTGATGGGAAAGAGTTTGA 774
Query 853 GCTCGTTGTTGAGAGGAGTAGAAATGTTGGTTACGTGAAGCAGCAAATTGCTTCAAAGGA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GCTCGTTGTTGAGAGGAGTAGAAATGTTGGTTACGTGAAGCAGCAAATTGCTTCAAAGGA 834
Query 913 AAAAGAGCTCGGAATCCCCAGGGATCATGAACTCACATTAGATGGTGAAGAGCTGGATGA 972
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AAAAGAGCTTGGAATCCCCAGGGATCATGAACTCACATTAGATGGTGAAGAGCTGGATGA 894
Query 973 CCAGAGACTCATCACTGATCTCTGTCAAAATGGAGACAATGTGATTCACTTGCTAATTAG 1032
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 895 CCAGAGACTCATCACTGATCTCTGTAAAAATGGAGAGAATGTGATTCACTTGCTAATTAG 954
Query 1033 CAAATCCGCTAAAGTCAGAGCTAAACCAGTGGGGAAGGATTTTGAAGTGTTTATCGAAGA 1092
||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 955 GAAATCCGTTAAAGTCAGAGCTAAACCAGTGGGGAAGGATTTTGAGGTGTTTATTGAAAA 1014
Query 1093 TGTAAATCACAAGCACAATGTGGATGGTAGAAGAGGAAAAAACATATCATCAGAAGCGAA 1152
|||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||
Sbjct 1015 TGTAAATCACAAGCACAATGTGGATGGTAGAAGAGGGAAAAACATATTATCACAAGTGAA 1074
Query 1153 GCCTAAAGAGTTCTTCGTGGAGCCTTTTATTGTTAATCCTGAAATTAAACTTCCGATATT 1212
|| |||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||
Sbjct 1075 GCATAAAGAGTTCTTTGTGGAGCCTGTTATTGTTAATCCTGAAATTAAACTGCCTTTATT 1134
Query 1213 GCTGAAAGAGCTTATCAGCTCCACTTTAGAAGGCTTGGAGAAGGGAAATGGCCCAATTCG 1272
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1135 GCTCAAAGAACTTATCAGCTCCACTTTAGAAGGCTTGGAGAAGGGAAATGGCCCGATTCA 1194
Query 1273 ATCATCTGATGGATCAGGAGGAGCTTATTTTATGCAAGATCCATCTGGACACAAGTATGT 1332
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 1195 ATCATCTGATGGATCAGGAGGTGCTTATTTTATGCAAGATCCATCCGGACACAAGTATAT 1254
Query 1333 CTCTGTCTTCAAGCCCATTGACGAGGAACCAATGGCTGTGAACAATCCGCATGGACAGCC 1392
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 1255 CTCTGTCTTCAAGCCCATTGACGAGGAGCCAATGGCTGTGAACAATCCGCGCGGACAGGC 1314
Query 1393 TGTTTCAGTAGATGGCGAGGGACTAAAGAAAGGCACACAGGTTGGTGAAGGAGCTATCAG 1452
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1315 TGTTTCAGTTGATGGCGAGGGACTAAAGAAAGGTACACAGGTAGGTGAAGGAGCTATGAG 1374
Query 1453 AGAAGTAGCAGCCTACATTTTGGACTATCCTATGACTGGACCACGAACTTTTCCTCATGA 1512
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1375 AGAAGTAGCAGCCTACATTTTGGACTATCCCATGACTGGACCACGAACTTTTCCTCATGA 1434
Query 1513 CCAAACCGGTTTTGCTGGTGTTCCGCCAACAACAATGGTCAAATGCTTGCACAAAGATTT 1572
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1435 CCAAACCGGTTTCGCTGGAGTTCCGCCAACAACAATGGTCAAATGCTTACACAAGGATTT 1494
Query 1573 CAACCATCCCAATGGTTACAGTTTCTCTCCTGAGAACACAAAGATAGGCTCACTGCAGAT 1632
||||||||| ||||||||||||||| |||||||||||||||| || || |||||||||||
Sbjct 1495 CAACCATCCTAATGGTTACAGTTTCGCTCCTGAGAACACAAAAATCGGTTCACTGCAGAT 1554
Query 1633 GTTTGTGAGTAATGTTGGAAGTTGCGAAGATATGGGATACCGAGTATTCCCTGTCGATCA 1692
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1555 GTTTGTGAGTAATGTTGGAAGTTGTGAAGATATGGGATACCGAGTATTCCCTGTCGATCA 1614
Query 1693 GGTTCACAAGATATCAGTACTAGACATAAGACTGGCTAATGCTGATCGTCATGCTGGCAA 1752
||||||||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1615 GGTTCACAAGATATCGGTTCTAGACATAAGGCTGGCTAATGCAGATCGACATGCTGGCAA 1674
Query 1753 CATTTTGGTTAGCCGAGATGGAAAAGATGGTCAGATGGTGCTTACTCCAATAGACCATGG 1812
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1675 CATTTTGGTCAGCCGAGACGGAAAAGATGGCCAGATGGTGCTTACTCCAATAGACCACGG 1734
Query 1813 CTATTGCTTTCCCAATAAGTTTGAAGATTGCACATTCGAATGGCTATACTGGCCTCAAGC 1872
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1735 CTATTGCTTTCCCAATAAGTTTGAAGATTGCACATTTGAATGGCTATACTGGCCTCAAGC 1794
Query 1873 AAAAGAGCCATACTCTTCAGAGACATTGGAATACATCAAATCCTTGGACCCCGAGAAAGA 1932
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 1795 AAAAGAGCCATACTCTTCAGAGACAGTGGAATACATCAAATCCTTGGACCCTGAGCAAGA 1854
Query 1933 CATCGAACTTCTGAGATTCCATGGTTGGGAGATTCCACCTTCATGCACCCGTGTCCTCCG 1992
|||| ||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 1855 CATCAAACTTCTGAGACTCCATGGTTGGGAGATTCCGCCTGCATGCGCCCGTGTCCTCCG 1914
Query 1993 TATTTCAACCATGCTTCTAAAGAAAGGTTCTGCAAAGGGTCTCACACCTTTTACCATCGG 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 TATTTCAACCATGCTTCTAAAGAAAGGTTCTGCAAAGGGTCTCACACCTTTTACCATCGG 1974
Query 2053 AAGCATAATGTGCAGAGAAACACTCAAGGAAGAATCTGTGATCGAGCAAATCATACATGA 2112
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1975 AAGCATAATGTGCAGAGAAACACTCAAGGAAGAATCTGTGATCGAACAAATCATACATGA 2034
Query 2113 TGCAGAAGCCATAGTGCCCACAGAGACAACCGAAGATGAGTTTAT-AAGCACCGTCTCTG 2171
|||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 2035 TGCAGAAGCCATAGTGCCGGCAGAGACAACCGAAGATGAGTTTATCAA-CACCGTCTCTG 2093
Query 2172 CCATTATGGACAACCGGCTCGACCAGTATGCTTGGAACTGAAAAATATC-TTCATCGTTC 2230
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2094 CCATTATGGACAACCGGCTCGACCAGTATGCTTGGAACTGAAAAATATCGTT-ATCGTTC 2152
Query 2231 TTTCGCTCCAATCT--GTTTGTGATTGTTCAACAGATGTATATCCAGTGTCCGCAACTAT 2288
||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2153 CTTCACCCCAATCTTTGTTTGTGATTGTTCAACAGATGTATATCCAGTGTCCGTAACTAT 2212
Query 2289 AAATAAGTGTCACTGTCTTTGAACTAATC 2317
|||||||||||||||||||||||||||||
Sbjct 2213 AAATAAGTGTCACTGTCTTTGAACTAATC 2241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89664436730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5