BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24270.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326713 jgi|Araly1|326713|fgenesh1_pm.C_scaffold_6001933 1002 0.0
> Ahg326713 jgi|Araly1|326713|fgenesh1_pm.C_scaffold_6001933
Length=654
Score = 1002 bits (542), Expect = 0.0
Identities = 615/651 (94%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 91 ATGGGCTGCTCTGTATCgaagaagaagaagaagaaTGCAATGCGACCACCGGGATATGAG 150
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGCTGCTCTGTGTCGAAGAAGAAGAACAAGAATGCAATGCGACCGCCGGGATATGAG 60
Query 151 GATCCCGAGCTTCTTGCATCCGTCACGCCATTCACGGTAGAAGAAGTGGAGGCTTTGTAT 210
||||| ||||||||||| ||| | |||||||| ||||||| ||||||||||||||||||
Sbjct 61 GATCCTGAGCTTCTTGCCTCCATTACGCCATTTACGGTAGCTGAAGTGGAGGCTTTGTAT 120
Query 211 GAACTGTTCAAGAAGCTAAGCAGCTCAATTATCGATGATGGTCTTATTCATAAGGAAGAA 270
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 121 GAACTGTTCAAGAAGCTAAGCAGCTCAATTATTGACGACGGTCTTATTCATAAGGAAGAA 180
Query 271 TTTCAGCTGGCTTTATTCAGAAATAGGAACCGGAGGAATCTCTTCGCTGATCGGATATTT 330
|| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TTCCAGCTGGCTTTATTGAGAAATAGGAACAGGAGGAATCTCTTCGCTGATCGGATATTT 240
Query 331 GATGTATTTGATGTGAAGCGAAATGGAGTGATCGAGTTTGGTGAATTTGTCCGGTCCTTA 390
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GATGTATTTGATGTGAAGAGAAATGGAGTGATCGAGTTTGGGGAATTTGTCCGGTCCTTA 300
Query 391 GGTGTCTTCCATCCAAGCGCGCCGGTCCATGA-AAAAGTCAAATTTGCTTTCAAGTTGTA 449
|| ||||||||||||||||| ||||||||||| |||| |||||||||||||||| |||||
Sbjct 301 GGCGTCTTCCATCCAAGCGCACCGGTCCATGATAAAA-TCAAATTTGCTTTCAAATTGTA 359
Query 450 CGATTTACGACAAACTGGATTCATCGAGCGAGAAGAATTGAAAGAGATGGTAGTAGCGCT 509
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 360 CGATTTACGACAAACTGGATTCATCGAGCGAGAAGAATTGAAAGAGATGGTAATTGCGCT 419
Query 510 TCTTCACGAATCCGAACTAGTTCTTTCCGAAGATATGATTGAAGTAATGGTGGATAAGGC 569
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TCTTCACGAATCAGAACTAGTTCTTTCCGAAGATATGATCGAAGTAATGGTGGATAAGGC 479
Query 570 TTTCGTGCAAGCAGACCGCAAAAACGACGGAAAAATCGATATAGATGAATGGAAAGACTT 629
||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 480 TTTTGTGGAAGCAGACCGCAAAAACGACGGAAAAATTGATATAGATGAATGGAAAGATTT 539
Query 630 TGTATCCTTGAATCCATCGCTCATCAAGAACATGACTTTGCCATATCTAAAGGACATAAA 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTATCCTTGAATCCATCGCTCATCAAGAACATGACTTTGCCATATCTAAAGGACATAAA 599
Query 690 TAGGACGTTTCCAAGTTTCGTTTCATCTTGTGAAGAGGAAGAAATGGAATT 740
|||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 600 GGGGACGTTTCCAAGTTTTGTTTCATCTTGTGAAGACGAAGAATTGGAATT 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5