BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24290.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489287 jgi|Araly1|489287|fgenesh2_kg.6__2421__AT5G24290.2 1744 0.0
> Ahg489287 jgi|Araly1|489287|fgenesh2_kg.6__2421__AT5G24290.2
Length=1720
Score = 1744 bits (944), Expect = 0.0
Identities = 1315/1483 (89%), Gaps = 70/1483 (5%)
Strand=Plus/Plus
Query 399 AGATCCAATAGTACTTGAGAGTACTGTGAGCGAAACCGGTTC--A-AACG-AA---G--- 448
|||||||||| |||| |||| ||||||||||||||||||||| | || | || |
Sbjct 274 AGATCCAATAATACTCGAGACTACTGTGAGCGAAACCGGTTCGAACAATGAAACCGGTTC 333
Query 449 -AATC-TGAAACCGGTTCAAACGAAGAAAATGGTAATAATTGGTTAGAGTCGAGCTCCAC 506
|| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 334 AAACCAAGGAACCGGTTCAAACGAAGAAAATGGTAATAATTGGTTAGAGTCGAGCTCTAC 393
Query 507 AAACTTGCCAAATGTAGAGAACAAAAGGCAACGGAATGGAGAAGATTGTGAGATAGAAGA 566
|||||| ||||| ||||| ||| ||||||||| ||| ||||||||||||||||| | ||
Sbjct 394 AAACTTACCAAAAGTAGAAAACGAAAGGCAACAGAACGGAGAAGATTGTGAGAT-G--GA 450
Query 567 GGAAGAAGAAAATAACGAGAGATCATTATCGGATTCAGAAGAGAAGTCAAACCTAGAGAA 626
||||||||||| ||||||||||| ||| | || || ||| | ||||||
Sbjct 451 AGAAGAAGAAAAGAACGAGAGATC---ATC--A-TC-----AG-TTTCAGA---AGAGAA 495
Query 627 GTTGCTTGGGACACAAGAAAACTATGAGCTTGGA-AATGAGGATGAAGAAAAGAACGAGA 685
|||||||| |||||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct 496 GTTGCTTGCAACACAAGAAAACTACGAGCTTGGAGAA-GAGGATGAAGAAAAGAAGGAGA 554
Query 686 GATCATCGTCAGATTCAGAAGAGAAGTCAAACCTAGAGAATTTGCTTGCGACACAAGAAA 745
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 555 GATCATCATCAGATTCAGAAGAGAAGTCAAACCTGGAGAAGTTGCTTGCGACACAAGAAA 614
Query 746 ACTACGAGCTTTACTGTCCTAGCTGTAGCACATGTATCACCAGAAATGTGGTTCTCAAGA 805
| |||||||| || ||||| ||||||||| |||||||||||||||| ||| |||||||||
Sbjct 615 AGTACGAGCTCTATTGTCCAAGCTGTAGCTCATGTATCACCAGAAAAGTGATTCTCAAGA 674
Query 806 AAAGAAAACGAGGGAAGCACGTTAATTCATCTCTGGATCTGAAACCCGATATACCGGTTG 865
||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||
Sbjct 675 AAAGAAAACGAGGGAAGCACGTTGATTCGTCTCCAGATCTGAAACCCGATGTACCGGTTG 734
Query 866 TTGAACCGGACGAACCAAGCGACATTGAGGAGATGGAATCACCAGTTAAGGTTTATGTCC 925
|| ||||||||| |||||||||||||||| |||| ||||||||| ||||||
Sbjct 735 TT---------GAACCAAGCCACATTGAGGAGATGGAGCCACCGGTTAAGGTTCATGTCC 785
Query 926 CTGAGACTCGGATTGAGGATG--A-TCAAGAAGAT-AA-A-GAGGGAACTATCTTTACTT 979
|||||||||| |||||||||| | |||||||||| || | ||||||| |||||| | ||
Sbjct 786 CTGAGACTCGTATTGAGGATGATACTCAAGAAGATAAAGAGGAGGGAATTATCTTCAATT 845
Query 980 GCTTGGTTTGTGATCTAAAGTACTTCATCCGGTTAGGAACAAAGTTCTTACAACTTGATT 1039
|||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 846 GCTTGG-CT-TG-TCTAAAGTACTTCATCCGGTTAGGAACAAGGTTCTTACAACTTGATT 902
Query 1040 ATATCAGGGGAAAACCGGTTGAGAAATCAGTTGAAGAATATATAGA--TG----TGAGGA 1093
|||||| ||||||||| |||||| || |||||||||||| |||||| || ||||||
Sbjct 903 ATATCACGGGAAAACCAGTTGAGGAACCAGTTGAAGAATGTATAGAGGTGATCATGAGGA 962
Query 1094 AGAGTATAAACACCACACAATCACC-ACCACAAATTCAACCGGACGGAGAAAGATTCGCC 1152
| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 963 ATAGTATAAACACCACACAATCACCGA-CACAAATTCAACCGGACCGAGAAAGATTCGCC 1021
Query 1153 ATTGAGTTGTTAAAGAGCACCGTCTACGGCGGTCTCACTGAGACCATCACCAGCCTCGGC 1212
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GTTGAGTTGTTAAAGAGCACTGTCTACGGCGGTCTCACTGAGACCATCACCAGCCTCGGC 1081
Query 1213 GTTGTATCATCTGCTTCTGCCTCTGGTTCCTCCACCATGAATATATTGGCTCTTGCTGTC 1272
|||||||| || || |||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1082 GTTGTATCCTCGGCCTCTGCCTCCGGTTCCTCCACCATGAATATCTTGGCTCTTGCGGTC 1141
Query 1273 GCAAATTTGGCCGGTGGGCTCATCGTCCTCGCTCAAAACTTTCAAGATCTAAGAAACAGT 1332
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1142 GCAAATTTGGCCGGTGGGCTCATCGTCCTAGCTCAAAACCTTCAAGATCTAAGAAACAGT 1201
Query 1333 TCAGATCAAGAGAAAGATAGGTACGAGGAATTGTTAGGGAGACGTACTAAATCCCGGATA 1392
|||||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||
Sbjct 1202 TCAGATCAAGAGAAAGATCGGTACGAGGAATTGTTAGGGAGACGTGCTAATTTCCGGATA 1261
Query 1393 CATATCTTAGTAGCGGTCATGTCTTACATTTTCTTCGGCCTAATTCCTCCGTTAGTTTAC 1452
||||||||||||||||| ||||||||||||||||||||| |||| ||||| || ||||||
Sbjct 1262 CATATCTTAGTAGCGGTGATGTCTTACATTTTCTTCGGCATAATGCCTCCATTGGTTTAC 1321
Query 1453 GCATTTTCCTTCTACGAAACCGGAATCAAGAACTACAAGCTCATCTCGGTTTTCTTGGGT 1512
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1322 GCATTTTCTTTCTACGAGACCGGAATCAAGAACTACAAGCTCATCTCGGTTTTCTTGGTT 1381
Query 1513 TCTCTGGTTTGCGTAATTTTGCTCGGT-TCGATCAAGGTCTATGTCCGAAAACCAACCAA 1571
||||| | ||||| |||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 1382 TCTCTACTGTGCGTGATTTTGCTCGGTAT-GATCAAGGTCTATGTCCGAAAACCG-CCAA 1439
Query 1572 T-TCATGTGGATCGACTAAAGCTTATCTCAAATCTGCGGCTTATTATACGTCTATTGTTG 1630
||| ||| || ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1440 ACTCACGTGAATTGACTAAAGCTTATCTAAAATCTGCGGCTTATTATACGTCTACTGTTG 1499
Query 1631 TTGCTTCTTGCGGAATCTCATACGTTGTCGGAGATATTATGGGAGAGTATATCGAG-AAG 1689
|||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||
Sbjct 1500 TTGCTTCTTGCGGAATTTCATACTTTGTCGGAGATATTATGGGAGAGTATATCG-GTAAG 1558
Query 1690 CTCAGTTTGGTTGGTTTAGACCAGATCAGTATAACTTCACCATGTTATGGAATTAAACCC 1749
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1559 CTCAGTTTGGTGGGTTTAGACCAGATCAGTATAACTTCACCATGTTATGGAACTAAACCC 1618
Query 1750 GAGGAGTGCCGGTTTACTTCCTTTTAAT--A-T-ACAG-TGGGACTAAGAACCGGTCTGA 1804
|||||||||||||||||||||||||||| | | | || ||| |||||||||||||| ||
Sbjct 1619 GAGGAGTGCCGGTTTACTTCCTTTTAATGTAGTGAAAGGTGGAACTAAGAACCGGTCAGA 1678
Query 1805 CCAACGTTGTATAATTTCTGTTCTAATTACTTACTAAATCTCT 1847
||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1679 CCAGCGTCGTATA-TTTCTGTTCTAATTACTTACTAAATCTCT 1720
Score = 340 bits (184), Expect = 2e-92
Identities = 243/271 (90%), Gaps = 6/271 (2%)
Strand=Plus/Plus
Query 87 AGAACATTGGAATCAGATTCATTACATAGGGATTGATATGGAAAAGTCAAACCAACCAGT 146
|||||||||| ||| | |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1 AGAACATTGGCATCGGTTTCATTACATTGGGATTGATATGGAAAAGTCAAACGGACCAGT 60
Query 147 TCATGTAACCTTGTCCGAATTGAAGGACGGAGATAAAGAAATCGTTGATGCTGAATTTTT 206
| ||| || || |||||||||||||||||| || |||||| |||| ||||| |||| |||
Sbjct 61 TAATGCAAGCTGGTCCGAATTGAAGGACGGCGACAAAGAACTCGTAGATGCAGAATGTTT 120
Query 207 GGTTGATCTTCTTGAGAGCTATAGATTTGGTAAAGATAATGTTCCCGCCCGAGAATTTCG 266
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 121 GGTTGATCTTCTTGAGAGCTATAGATTTGGTAAGGATAATGTTCCAGCCCGAGAATTTCG 180
Query 267 ATCCAAGGCGGCAGCGACGGCTCCGGCGCCGGTCAACACCACCGAGATAGAGTTGGAAG- 325
|| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 181 ATTCAAGGCGGCAGCGACGGCGCCGGCGCCGGTCAACACCACCGAGATAGAGGTGGAAGT 240
Query 326 --A-G-G-ATAATGATGGATCTCAAGCTCAA 351
| | | | |||||||||||||||||||||
Sbjct 241 CGAAGAGGACAATGATGGATCTCAAGCTCAA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5