BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24310.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489290 jgi|Araly1|489290|fgenesh2_kg.6__2424__AT5G24310.1 1690 0.0
> Ahg489290 jgi|Araly1|489290|fgenesh2_kg.6__2424__AT5G24310.1
Length=1418
Score = 1690 bits (915), Expect = 0.0
Identities = 1106/1197 (92%), Gaps = 17/1197 (1%)
Strand=Plus/Plus
Query 191 TTTTTTGGTGTTTAAATCAC-CCATTTTTGTCAATCTGTTTTTCGAGCAA---AACACCA 246
|||||| ||||||||||| | |||||||| |||||||||||||||||||| | || |
Sbjct 155 TTTTTTTGTGTTTAAATCTCTCCATTTTTATCAATCTGTTTTTCGAGCAATTTAGCAGCG 214
Query 247 GGAGGAAACCAAAAAGCTAGAGGCTTTG-TGGAGTGAGAAGAAGAGT-CTCAGTGAAAAC 304
|||||||||| ||||||||||| ||| | |||| ||||||||| | | ||||| |||
Sbjct 215 GGAGGAAACC-AAAAGCTAGAGTCTTGGAGGGAG-AAGAAGAAGATTCCGCAGTG-AAAG 271
Query 305 AGA-AAGCAGCATTTGAGATTCCACTGTTAATCTTTGAATTAAAAATGAGTGCAGCAGCT 363
||| || ||| ||| || |||| |||||||||||||| | |||||||||||||| |||
Sbjct 272 AGAGAA-CAGGGTTT--GA-TCCATTGTTAATCTTTGAA-TCAAAATGAGTGCAGCGGCT 326
Query 364 ACAATGCCTATGCCCCGAGAAGCGTCTAATTACGATGAGATCTCTATGCAACAGAGCATG 423
|| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 327 ACCATGCCCATGCCCCGAAAAGCATCTAATTACGATGAGATCTCTATGCAACAGAGCATG 386
Query 424 CTCTTCTCTGATAGTCTCAAGGATCTGAAGAATCTGAGAACACAGTTGTATTCAGCAGCT 483
||||| |||||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 387 CTCTTTTCTGATAGCCTTAAGGATCTGAAAAATCTGAGAACACAATTGTATTCAGCAGCT 446
Query 484 GAGTATTTCGAACTATCCTACACAAACGATGAACAAAAACAGATAGTCGTGGAGACACTG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GAGTATTTCGAACTATCCTACACAAACGATGAACAAAAACAGATAGTCGTGGAGACACTG 506
Query 544 AAAGATTATGCAATAAAGGCTCTGGTGAATACAGTTGACCATTTGGGGTCTGTTACATAT 603
|||||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 507 AAAGATTACGCGATAAAGGCTTTGGTGAATACAGTTGACCATTTGGGATCTGTTACATAT 566
Query 604 AAAGTAAATGACTTTGTAGATGAAAAAGTCGATGAAGTAGCAGGAACCGAACTGCGAGTA 663
||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 567 AAAGTCAATGACTTTGTCGATGAAAAAGTTGATGAAGTAGCCGGAACCGAACTACGAGTG 626
Query 664 TCTTGCATTGAACAGAGGCTACGGATGTGCCAAGAGTACATGGATCATGAAGGTCGTTCC 723
||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 627 TCTTGTATTGAACAGAGGTTACGGATGTGCCAAGAGTATATGGATCATGAAGGTCGTTCA 686
Query 724 CAGCAATCACTTGTGATCGACACTCCAAAGTTCCACAAGCGGTACTTCTTGCCTTCTGGT 783
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 687 CAGCAATCACTCGTGATCGACACTCCAAAGTTCCACAAGCGATACATCTTGCCTTCGGGC 746
Query 784 GAAATCAAAAGAGGTGGCAACCTCGCAAAGCTTAAGAATGTTGAAGGTAGTTTTGATGGA 843
|||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 747 GAAATCAAGAGGGGTGGCAACCTCGCAAAGCTAAAGAATGTTGAAAGTAGTTTTGATGGA 806
Query 844 GAAGATGACTGGAACCAATTCAGAAATGCTGTTCGCGCTACAATTCGTGAAACGCCTCCA 903
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 807 GAAGAGGACTGGAACCAATTCAGAAATGCTGTTCGTGCTACAATTCGTGAAACGCCTCCA 866
Query 904 CCACCTGTTAGAAAACCGATACTTCAGTCTCCCTCTCAACGGAAACCTCAACGTTCAGCA 963
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CCACCCGTTAGAAAACCGGTACTTCAGTCTCCCTCTCAACGGAAACCTCAACGTTCAGCA 926
Query 964 ACCTTTTCGTTCTCCTCTATCGCCACCGCACCAAAGAAAGAACAAGATAAGCGAGCAGTA 1023
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 927 ACCTTTTCGTTCTCCTCTATTGCCACGGCACCAAAGAAAGAACAAGATAAGCGAGCAGTA 986
Query 1024 TCACCACATCGGTTTCCGCTGCTAAGATCTGGTTCGGTTGCTATCCGACCGTCATCAATC 1083
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 987 TCACCACATCGGTTTCCGCTTCTAAGATCTGGTTCGGTTGCTATCCGACCATCATCAATC 1046
Query 1084 AGCCGGCCAACAACCCCGAGCAAGAGTAGAGCGGTAACTCCAACTCCTAAACGGTATCCG 1143
||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1047 AGCAGGCCAACAACCCCGAGCAAGAGTAGAGCAGTAACTCCTACTCCTAAACGGTATCCA 1106
Query 1144 TCAGAACCAAGAAGATCGGCTTCGGTTCGGGTTGCGTTCGAGAAAGAAGCTCAGAAAGAA 1203
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1107 TCAGAACCAAGAAGATCGGCTTCGGTTCGAGTTGCATTCGAGAAAGAAGCACAGAAAGAA 1166
Query 1204 CCAGAGCATCAACAACAACCGAGCAAGAGCAAACGGCTGCTAAAGGCGCTACTTAGCCGA 1263
||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1167 CCAGAACATCAACAACAACCGAGCAAGAGCAAACGGCTGCTTAAGGCGTTGCTTAGCCGA 1226
Query 1264 CGCAAAACAAAGAAGGACGATACGCTCTACACTTATTTGGACGAATATTAAACCGAAAGC 1323
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 CGCAAAACCAAGAAAGACGATACGCTCTACACTTATTTGGACGAATATTAAACCGAAAGC 1286
Query 1324 TGGTTTTGTATGTTGACTGGTAAACCGGAAATTACATTCCAG-TTTTAATTGCATTT 1379
||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1287 TGGTTTTGTATATCGACTGGTAAACCGGAAATTACATTCCAACTTTTA-TTGCATTT 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5