BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24313.1

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489292 jgi|Araly1|489292|fgenesh2_kg.6__2426__AT5G24313.1         424    5e-118


> Ahg489292 jgi|Araly1|489292|fgenesh2_kg.6__2426__AT5G24313.1
Length=533

 Score =  424 bits (229),  Expect = 5e-118
 Identities = 290/319 (91%), Gaps = 6/319 (2%)
 Strand=Plus/Plus

Query  4    ATAGTTGATAAGCAAAGAAATTAACTCTATCGATCACCGGATGAGAAAATGGCTTCTA-G  62
            ||||||||| |||||| |||||||||| |||||||||||||| | |||||||||| || |
Sbjct  1    ATAGTTGATGAGCAAATAAATTAACTCAATCGATCACCGGATAAAAAAATGGCTTTTAGG  60

Query  63   --GAATCATCTCTTAATATGTTGTGTTCTCTTAGCTATGATCATGATCGGGCATGCTCAA  120
              |||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||
Sbjct  61   AAGAATCATCTCTTAATATGTTGTATTCTCCTAGCTATGGTAATGATCGGGCATGCTCAA  120

Query  121  ACCAACCGGAAACTTCTTGACGATAATGTACCATCATCTTATTTTCCATCGATGGAGTCT  180
            ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct  121  ACCAATCGGAAACTTCTTGACGATAATGTATCATCCTCTTATTTTCCATCGATGGAATCT  180

Query  181  CGTCAGGTTTTTCTTCCTTCTTCTCATCGTTCACTTGTTGCTGAGCATTACGACAGATCA  240
            ||||| | ||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct  181  CGTCAAGCTTTTCTTCCTTCTTCTCATCGTTCACTTGGTGCTGAGCATTATGAGAGATCA  240

Query  241  CCACCTCCACCACCACCCAAAA-G--ATCAGAAGTTGAACCCCAAACTGATGGTGTCTAG  297
            ||||||||||||||||| |||| |  |||||||||||||||||||||| |||||||||||
Sbjct  241  CCACCTCCACCACCACCAAAAAAGTCATCAGAAGTTGAACCCCAAACTAATGGTGTCTAG  300

Query  298  ACCATTGAGTGATGGTGAG  316
            |||||||||| ||| ||||
Sbjct  301  ACCATTGAGTTATGATGAG  319



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22606889781


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5