BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24314.2
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489293 jgi|Araly1|489293|fgenesh2_kg.6__2427__AT5G24314.1 699 0.0
> Ahg489293 jgi|Araly1|489293|fgenesh2_kg.6__2427__AT5G24314.1
Length=545
Score = 699 bits (378), Expect = 0.0
Identities = 484/531 (91%), Gaps = 24/531 (5%)
Strand=Plus/Plus
Query 43 GTGTATCAATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTATTATTGATA 102
||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GTGTAGCCATGGCTTCCTTCACCTGTTCTTCTCCATCTTCGATTTTACCTATTGCTGATA 60
Query 103 CGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGGTTTCTTGTGGGATTCAGAGAG 162
| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CAAGAAGCGGGAATTTGCGCTGCACATTTCACTCTCAGGTTTCTTGTGGGATTCAGAGAG 120
Query 163 ATGATAATGGACGCCGTGTTTGGCGGAGGAGAACATTGGTAAGTACTAAACTTGATATTT 222
||||||||||||||||||||||||||| | | | | | || | |
Sbjct 121 ATGATAATGGACGCCGTGTTTGGCGGA-G-G---A---G---G------AC-----A--T 156
Query 223 TGACGAAGAAGGACGATATGTTGCGTTACAAAATGCAAAGAGTTCCATTTGTGGAAGAAC 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 157 TGACGAAGAAGGACGATATGTTGCGTTACAAAATGCAAAGAGTTCCATTTGTGGAGGAAC 216
Query 283 AAGTAAGGAAGATAAGAGAAGTTGGGAAGGTAATGACAATGGACATAGAGCAGCTTCTTT 342
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 217 AAGTAAGGAAGATAAGAGAAGTTGGGAAAGTAATGACAATGGACATAGAGCAGCTGCTTT 276
Query 343 TGAGGGAAGACAATCGGTTTGAATTTGTCAATAGCGTAGCAGCTGAAGCAACAGAGTACG 402
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 277 TGAGGGAAGACAATCGGTTTGAATTTGTCAATAGTGTAGCAGCTGAAGCAACAGAGTACG 336
Query 403 TGGACAAGAACAGAGACGAATATGGAGGTTCCAAAAAAGCCATCTTTCATGTTCTAAGCA 462
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 337 TGGAAAAAAACAGAGACGAATATGGAGGTTCCAAAAAAGCCATCTTTCATGTTCTGAGCA 396
Query 463 ACCGTGTGAACGATCTCGGCTTTGATCGCCCTGAGGCTTATGTAGAAGCTGATCCTTACA 522
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 397 ACCGCGTGAACGATCTCGGGTTTGATCGCCCTGAGGCTTATATAGAAGCTGATCCTTACA 456
Query 523 AACCCGGTCCTGGCTATTTGTTGGAGTACTACACTTGATATATTATAACAA 573
| |||||||||||||||||||||||||| ||||| ||| ||||||| ||||
Sbjct 457 AGCCCGGTCCTGGCTATTTGTTGGAGTATTACACATGAGATATTATTACAA 507
Score = 65.8 bits (35), Expect = 4e-10
Identities = 38/39 (97%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 605 TTGTATTACCAAAACCAAATCAATGCATTCACAGCTTTG 643
|||||||||| ||||||||||||||||||||||||||||
Sbjct 508 TTGTATTACC-AAACCAAATCAATGCATTCACAGCTTTG 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24017437710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5