BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24316.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894329 jgi|Araly1|894329|Al_scaffold_0006_2325                    424    4e-118


> Ahg894329 jgi|Araly1|894329|Al_scaffold_0006_2325
Length=360

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 321/364 (88%), Gaps = 11/364 (3%)
 Strand=Plus/Plus

Query  51   ATGAAGCTAGTGATACTAGTATCTTTCTTGCTCGTTCTCCCAATGTTTTCTTCAGGGATC  110
            |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGTTGGTGATACTAGTATCCTTCTTGCTCGTTCTCCCAATGTTTTCTTCAGGGATC  60

Query  111  GTTGAGACTTTGCATCATGACAACATCAACCGCAAGGTTAAAGAGATGGTCATGAATGGA  170
            |||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct  61   GTTGAGACTTTGCATCTTGACAACGTCAACCGCAAGGTTAAAGAGTTGGTCATGAGTGGA  120

Query  171  AGAAGAATCGATCTGGAGATGGACTACGCTGGGCCGCATCTAAGACCTCCCAAGCCAT-C  229
            ||||||||||||||||||||||||||| |||||||||||| | |||| ||||| |||  |
Sbjct  121  AGAAGAATCGATCTGGAGATGGACTACACTGGGCCGCATCCACGACCGCCCAACCCAGGC  180

Query  230  C--G--A-CCCTACAATTCC-AGGAACACAAGTTGATGAGGTTGTGACAAAGGAACCAAC  283
            |  |  | |||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct  181  CCAGCCAACCCTACAAATCCGAG-AACACAAGTTGATGAGGTTGTGACAAAGGAACCAAC  239

Query  284  TGTCTATAACAAAGAAGACTATGGGGACTGGTCTCCAAGACCAATCCCAAAACGACCAAT  343
             |  |||| || |||   ||||||||||||||| ||| | ||| || ||  |||||| | 
Sbjct  240  GGAGTATATCATAGA---CTATGGGGACTGGTCCCCACGTCCAGTCACACCACGACCGAG  296

Query  344  GCCATATGTAcctcctcctcctcctccACCGACACGACGACCTCCTTTCACCACAAATCA  403
            ||||||||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||
Sbjct  297  GCCATATGTACCTCCTCCTCCTCCTCCTCCTTCACGACGACCTCCCTTCACCACAAATCA  356

Query  404  CTAG  407
            ||||
Sbjct  357  CTAG  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5