BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24318.1
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351455 jgi|Araly1|351455|fgenesh1_pg.C_scaffold_6002048 1945 0.0
> Ahg351455 jgi|Araly1|351455|fgenesh1_pg.C_scaffold_6002048
Length=1332
Score = 1945 bits (1053), Expect = 0.0
Identities = 1238/1328 (93%), Gaps = 10/1328 (1%)
Strand=Plus/Plus
Query 94 GGAGTTCTCTTAATCCTT-TCAACAGGAAG-TGAAGCGAGTATTGGTGTAAACTACGGCA 151
||| |||| |||| ||| |||||||| || ||||||||| |||||||||||||||||||
Sbjct 7 GGACTTCTAATAAT-CTTCTCAACAGG-AGCTGAAGCGAGCATTGGTGTAAACTACGGCA 64
Query 152 CACTAGCTAACAACCTCCCTCCACCGCAACAAGTAGCGGAGTTCCTCCTCCATTCCACCG 211
|||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 65 CACTTGCCAACAACCTCCCTCCGCCGCAACAAGTAGCGGAGTTCCTCCTCCATTCAACCG 124
Query 212 TCATTAACCGCATCCGCCTCTTCGACACCGATCCTCAAATCCTCCAAGCCTTCGCTAACA 271
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 125 TCATTAACCGCATCCGCCTCTTCGACACCGATCCTCAAATCCTCCAAGCCTTTGCTAACA 184
Query 272 CCGGTATCGCCGTTACCGTAACCGTCCCCAACGACCAAATCCCACACTTAACCAACCTCT 331
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CCGGTATCGCCATCACCGTAACCGTCCCCAACGACCAAATCCCACACTTAACCAACCTCT 244
Query 332 CCTCCGCCAAACAATGGATCTCCGATCACATCCAACCTCACTTCCCATCCACAAACATCA 391
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 245 CCTCCGCCAAACAATGGATCTCCGATCAAATCCAACCTCACTTCCCATCAACAAACATCA 304
Query 392 TCCGTATCCTCGTCGGAAACGAAGTCATCTCCACCGCCGATCACCTCCTCATCAGAACCT 451
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 305 TCCATATCCTCGTCGGAAACGAAGTCATCTCCACCGCCAATCACCTCCTCATCAGAACCT 364
Query 452 TAATCCCGGCTATGCAATCTCTCCACACCGCCTTAGTCTCCGCCTCTCTCCACCGTCGAA 511
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 365 TAATCCCAGCAATGCAATCTCTCCACACCGCCTTAGTCTCCGCTTCTCTCCACCGTCGAA 424
Query 512 TTCAAATCTCAACGCCACATTCTTTAGGAACCCTCACTAATTCAACCCCACCTTCTTCCG 571
| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 425 TCCAAATCTCAACGCCACATTCTTTAGGAATCCTCACTAATACAACCCCACCGTCTTCCG 484
Query 572 CTAAGTTCCGGCGAGGCTACGACGCCCAA-GTCCTCAAGCCTCTCCTTAGCTTCCTCCGT 630
||||||||||||||||||||||| | || || || ||||||||||||||||| |||||
Sbjct 485 CTAAGTTCCGGCGAGGCTACGAC-ACAAATGTGCTTAAGCCTCTCCTTAGCTTTCTCCGA 543
Query 631 TCTACTTCTTCGCCGTTCGTCGTGAATCCTTATCCC-TTCTTCGGTTATTCAATCGAAAC 689
||||||||||| |||||||||||||||||||| ||| |||||||| || |||||||||||
Sbjct 544 TCTACTTCTTCTCCGTTCGTCGTGAATCCTTA-CCCGTTCTTCGGCTACTCAATCGAAAC 602
Query 690 TCTCGATTTCGCTCTCTTTAGACCTAATCCAGGCTTATTTGATCAACACACGAAGCTTCT 749
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 603 TCTCGATTTCACTCTCTTTAGACCTAATCCAGGCTTATTCGATCAACACCCGAAGCTTCT 662
Query 750 CTACACAAACATGCTCGATGCTCAGCTTGATTCGGTTTATTCCGCCATGGATAAATTAGG 809
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 663 CTACACAAACATGCTCGATGCTCAGCTTGATTCGGTTTATTCCGCCATCGATAAGCTAGG 722
Query 810 GTTTTCAGATGTTGAGATTGTGATTGGTGAAATTGGATGGCCATCGGAGGGAGATATAGA 869
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 723 GTTTTCAGATGTTGAGATCGTGATTGGCGAAATTGGATGGCCATCGGAGGGAGATATAGA 782
Query 870 TCAGATCGGAGTTGATGTTGATACAGCGGCTGAGTTTAACAAGAATCTGATTGCGCGTGT 929
||| ||||| |||||||||| |||||||||||| ||||||||||||||| | ||||||||
Sbjct 783 TCAAATCGGCGTTGATGTTGCTACAGCGGCTGAATTTAACAAGAATCTGGTGGCGCGTGT 842
Query 930 AGATTCCGGTACCGGAACTCCATTGATGCCAAATCGGACTTTTGAAACTTACATTTTCGC 989
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AAATTCCGGTACTGGAACTCCATTGATGCCAAATCGGACTTTTGAAACTTACATTTTCGC 902
Query 990 GCTCTTCAATGAAAATCTCAAATCGGGACCAACGTCGGAGCGTAATTTCGGCATCTTCCG 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GCTCTTCAATGAAAATCTCAAATCGGGACCAACGTCGGAGCGTAATTTCGGCATCTTCCG 962
Query 1050 ATCAGATCTGACACCGATTTACGACATCGGAATCCTCCGGCCAACGTTTAGATCATCGGA 1109
||| ||| |||| ||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 963 ATCTGATTTGACTCCGATCTATGACATCGGAATCCTCCGGCCAACGTTTAGATCATCGAA 1022
Query 1110 TCCGGTTTACAATCCT-CGATCACCGGTTAGAGGATCGTCGTCGAAGCGGTGGTGCGTGA 1168
||||| | ||| | | | | |||||| ||| |||| || ||||||||||||||| |
Sbjct 1023 TCCGGAGAATAATACGGCAA-CGCCGGTTCGAGCATCGCCGGAGAAGCGGTGGTGCGTTA 1081
Query 1169 CAAAGGCCGGTGCAGAGACGGTGGCTTTACAAAGGAACATTGATTACGTATGTGGGTTGG 1228
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1082 CAAAGGCCGGTGCTGAGACGGTGGCTTTACAAAGGAACATTGATTACGTATGTGGATTGG 1141
Query 1229 GTTTGGATTGTAGGCCCATTAATGAAGGTGGGCTTTGTTACTTGCCGAATACAGTGAAAG 1288
| ||||| ||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct 1142 GCTTGGACTGTAGGCCCATTAATGAAGGTGGGCTTTGTTTTTTACCGAACACAGTAAAAG 1201
Query 1289 CCCATTCGAAGTACGCAATGAACTTGTATTACCAAACTATGGAGAAACACGAGTTCGATT 1348
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CCCATTCGGAGTACGCCATGAACTTGTATTACCAAACTATGGAGAAACACGAGTTCGATT 1261
Query 1349 GCGATTTCGACAACACTGGAGAGATAACTACGATTGATCCCAGTTATGGAAATTGTGAAT 1408
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1262 GCGATTTCGACAACACTGGAGAGATAACTACGATTGATCCAAGCTATGGAAATTGTGAAT 1321
Query 1409 ATCAGGCT 1416
||||||||
Sbjct 1322 ATCAGGCT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5