BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24320.2
Length=2582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894331 jgi|Araly1|894331|Al_scaffold_0006_2327 2883 0.0
> Ahg894331 jgi|Araly1|894331|Al_scaffold_0006_2327
Length=2112
Score = 2883 bits (1561), Expect = 0.0
Identities = 1946/2121 (92%), Gaps = 69/2121 (3%)
Strand=Plus/Plus
Query 79 GAAGAAGAAGAAGAGTCTCGATTTTTCGATGCTCACGAAGAAATCGCATCTTGTTCAAGT 138
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 22 GAAGAAGAAGAAGAAACTCGATTTTTCGATGCTCTCGAAGAAATCGCATCTTGTTCAAGT 81
Query 139 -C----C-TTGTA-AA---A-T-C---GAATCTCCATCGTCGATTTCTGGAGAATTTCGT 183
| | ||||| || | | | ||||||| ||||||||||||||| || |||||
Sbjct 82 ACAAGTCTTTGTAGAATCGAGTACGATGAATCTCTATCGTCGATTTCTGGGGATTTTCGA 141
Query 184 TACGATGTTTGGATCAAAAGCCCTGGTAACACTGAGGAGCGTCGTGAGAAGTTTTTGAAG 243
||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 142 TACGATGTTTGGATCAAAAGCCCAGGAAACACTGAGGAGCGTCGTCAGAAGTTTTTGAAC 201
Query 244 TGGATGGGTTTAAGTAGTACTGTAAACG-A-ATCGAAATCAGGTAATGTGTATCGGTTAT 301
||||||||||||||||||||||| || | | || ||||||||||||||| |||| || |
Sbjct 202 TGGATGGGTTTAAGTAGTACTGTGAAGGCAGAT--AAATCAGGTAATGTGAATCGTTTGT 259
Query 302 CGAGCTCGGTTAACGAATCAGCGGTTTTGATGAGTTTGAAATCTGATGACGATGAGTTTA 361
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 260 CGAGCTCGGTTAATGAATCAGCGGTTTTGATGGGTTTGAAATCTGATGATGATGAGTTTA 319
Query 362 GCTCTTCTCGTTGTGA---TTC--T-TTTAGTCCAAGTGAGAGTGTAGATAGAGTTGTGA 415
|||||| ||||||||| ||| | |||||||||||||||| || | |||| |
Sbjct 320 GCTCTTGTCGTTGTGATTCTTCTGTGTTTAGTCCAAGTGAGA--GT-G-TAGA----T-- 369
Query 416 ATGAGAGTTTGTGTAAAGAGGAAGGAGAAGTAGATAGTGGTATGGTTTTGAGGAATTTGG 475
| || | ||||| ||||||| | ||||||||||||| | |||||||||||||||||||
Sbjct 370 A-GA-A--TTGTG-AAAGAGG-A--AGAAGTAGATAGTCGAATGGTTTTGAGGAATTTGG 421
Query 476 GTTTT-GT--TGATGATG--G-TGATATTAGCTCTAGTCTTTGTTCTTTATCATCATCTC 529
||||| || |||||||| | ||| ||||||||||||||||||||| ||| ||||| |
Sbjct 422 GTTTTGGTGATGATGATGATGATGAGATTAGCTCTAGTCTTTGTTCTGTATTGTCATCAC 481
Query 530 CTGTATC-GGAT-AA--G--A---TTGTGAAGGAACATGGTGAACCTAAGTTGTTACCAG 580
||||||| || | || | | ||||||||||| |||||| ||| ||||||||
Sbjct 482 CTGTATCGGGTTCAACGGATAGGTTTGTGAAGGAAAATGGTG-----AAG-CGTTACCAG 535
Query 581 ACCCGATGGTTGCTGAGGAGGAACGGGAAGTAAGTGGGATTATGAAGAGGGTTAAGGAGA 640
||||||||||||||| |||| || |||| ||| |||||||||||||||||||||||||||
Sbjct 536 ACCCGATGGTTGCTGCGGAGCAAAGGGATGTAGGTGGGATTATGAAGAGGGTTAAGGAGA 595
Query 641 AATGGTTGAGTCGGTTGTACAAAGTGCGGAACAAGCGA-AGTGCGGGAGGAGATGATAAT 699
|||||||||||||| ||||||||||||||| |||| | ||||| | ||||||||||||
Sbjct 596 AATGGTTGAGTCGGCTGTACAAAGTGCGGAGTAAGC-AGAGTGC--G-GGAGATGATAAT 651
Query 700 GGCGGTGAAGTTGCGGTTTGCGGGAGTAGGATTGAGAGAGTGAAGGTGAAAGAGTATAAA 759
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 652 GGTGGTGAAGTTGCGGTTTGCGGGAGTAGGATTGAGAGAGTTAAGGTGAAAGAGTATAAG 711
Query 760 AAAGAGGCTAAGGAGCTTTCTGCTCTTTTTAAAGGTCAAGAGATACAAGCTCATGAAGGA 819
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 AAAGAGGCTAAAGAGCTTTCTGCTCTTTTTAAAGGTCAAGAGATACAAGCTCATGAGGGA 771
Query 820 GCGATTCTCGCTATGAAGTTTAGTCCTGATGGGAGGTATCTTGCGAGTGCTGGTGAAGAT 879
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 772 GCGATTCTCGCTATGAAGTTTAGTCCTGATGGGAGGTACCTTGCCAGTGCCGGTGAAGAC 831
Query 880 GGGGTTTTGCGGGTTTGGAGTGTTGTTGAAGACGAAAGATGTGAAGAACATGATGTTCCT 939
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 832 GGGGTTTTGCGGGTTTGGAGTGTTGTTGAAGATGAAAGATGTGAAGAACATGACGTTCCT 891
Query 940 AAGATTGATCCTTCTTGTATATACTTTGAAGTGAGTAAACTCTCTGAGTTGAGACCGGTG 999
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 892 AAGATTGATCCTTCTTGTATATACTTTGAAGTGAGCAAACTCTCTGAGTTGAGACCTGTG 951
Query 1000 GCTGTAGAAAAGGATGGGATTACTGGTTCGTTGATGAGTCCAAGGAAGACAACAGAGTCT 1059
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 952 GCTGTAGAAAAGGATGGTATTACTGGTTCTTTGATGAGTCCAAGGAAGACAACAGAGTCT 1011
Query 1060 GCTTGTGTTATTATTCCCCCAAAGATTTTTCGGGTTCTTGATAAACCGCTTCACGAGTTT 1119
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1012 GCTTGTGTCATTATTCCCCCAAAGATTTTCCGGGTTCTTGATAAACCACTTCACGAGTTT 1071
Query 1120 CTCGGTCACAGTGGTGATATCCTTGATATCTCTTGGTCCAAGAACAATCGTCTGTTGTCA 1179
|| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1072 CTTGGTCATAGTGGTGATATCCTTGACATCTCATGGTCCAAGAACAATCGTCTGTTGTCA 1131
Query 1180 GCTTCAGTAGACAATAGTGTTCGGCTTTGGCAGATCGGCTGTGAGGACTGTCTTGGAATC 1239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1132 GCTTCAGTAGACAATAGTGTTCGGCTTTGGCAGATCGGCCATGAGGACTGTCTTGGCATC 1191
Query 1240 TTCTCTCACAATAACTACGTTACATCCGTTCAGTTTAACCCGGTTGATGATGATCACTTC 1299
|| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1192 TTTTCTCACAGTAACTACGTTACGTCTGTTCAGTTTAACCCGGTTGATGATGATCACTTC 1251
Query 1300 ATCAGTGGTTCCATAGATGGAAAAGTTCGTATCTGGTCAGCTTCACAGTGCCAAGTTGTA 1359
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1252 ATCAGTGGTTCGATAGATGGAAAAGTACGTATCTGGTCAGCTTCTCAGTGCCAAGTTGTA 1311
Query 1360 GATTGGGCCGATGCTAGAGGCATTGTAACCGCAGTTTGTTATCAACCTGATGGGCAGGCA 1419
||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1312 GATTGGGCCGACGCTAGAGGCATTGTAACCGCAGTTTGTTATCGCCCAGATGGGCAGGCA 1371
Query 1420 GTGATTATCGGAACTTTGACAAGCGATTGTCGCTTCTACAATGTATCAGGCCACTGCCTT 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GTGATTATCGGAACTTTGACAAGCGATTGTCGCTTCTACAATGTATCAGGCCACTGCCTT 1431
Query 1480 CAACTTGATGGTCATATATGTCTGCACAACAAAAAGAAGTCGTCGAATAAACGAATAATC 1539
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1432 CAACTCGATGGTCATATATGTCTGCACAACAAAAAGAAGTCGTCAAATAAACGAATAATC 1491
Query 1540 GGCTTTCAGTTTCTTCTGCAGTTTGATTCTACTGACCCAAGCAGAGTCATGGTGGCATCA 1599
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1492 GGCTTTCAGTTTCTTCTGCAGTTTGATTTTACCGACCCAAGCAGAGTCATGGTGGCATCC 1551
Query 1600 GCAGATTCACAAGTGAGGATCATTAGTGGTCGCAACGTTGTCCACAAATACAAAGGATCT 1659
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1552 GCAGATTCACAAGTGAGGATCATCAGCGGTCGCAACGTTGTCCACAAATACAAAGGATCT 1611
Query 1660 CGAAATGCTGGAAACCAGATATCGGCATCTTTTACAGCAGACGGGAAGCATATAGTCTCT 1719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1612 CGAAATGCTGGAAACCAGATATCGGCATCTTTTACAGCAGACGGGAAGCATATAGTATCA 1671
Query 1720 GCGTGTGACGATTCATCGGTCTACGTCTGGAACTGCGTTGGACACGACCCTGAACAGTCG 1779
||||||||||| || || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1672 GCGTGTGACGACTCCTCAGTCTACGTCTGGAACTGCGTTGGACACGACCCTGAACAGCCA 1731
Query 1780 TCTCCTGGTTTTTTCTCTCACACCAAACGACTTAAAATCCGATCATTCGAAAAATTCTCT 1839
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1732 TCTCCTGGTTTTTTCTCTCACACCAAACGACTTAAAATCCGATCGTTCGAAAAATTCTCT 1791
Query 1840 GCGGATGTTTCAGTAGCTATCCCGTGGTGCGGATTTACGCCTGTACTCTCCGGCGGATCC 1899
|| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1792 GCAGATGTCTCAGTCGCTATCCCGTGGTGTGGATTTACGCCTGTACTCTCCGGCGGATCA 1851
Query 1900 GAGCTATCGCCATCGCTCTTCTCATTAGGGCGCGAGTACGTTCTCGATTCTCCCAAGGGA 1959
||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1852 GAGCTATCGCCATCGCTTTTCTCATTGGGGAGAGAGTACGTTCTCGATTCTCCCAAGGGA 1911
Query 1960 TCTGCCACTTGGCCGGAAGAGAAGCTAGCGAGCTCGTTTTCTCCGGTGAAAGCGATCCGT 2019
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1912 TCCGCCACTTGGCCGGAGGAGAAGCTAGCGAGCTCGTTTTCTCCAGTGAAAGCGATCCGT 1971
Query 2020 AGATCGCATTACAAATTCCTCCGGTCTTCGTGCCGGAGAACGTCGGAGTCATCTCATCTC 2079
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1972 AGATCACATTACAAATTCCTCCGATCGTCGTGCCGGAGAACGTCGGAGTCATCTCATCTC 2031
Query 2080 TGGGGATTGGTTATAGTCACCGGTGGTTGGGATGGACGGATCAAATTGTTTCACAACTAT 2139
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2032 TGGGGATTGGTTATAGTCACCGGCGGGTGGGATGGACGGATCAAATTGTTTCACAACTAT 2091
Query 2140 GGTTTGCCTGTTCCCGTTTGA 2160
|||||||||||||||||||||
Sbjct 2092 GGTTTGCCTGTTCCCGTTTGA 2112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97358666220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5