BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24330.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489297 jgi|Araly1|489297|fgenesh2_kg.6__2431__AT5G24330.1 1637 0.0
> Ahg489297 jgi|Araly1|489297|fgenesh2_kg.6__2431__AT5G24330.1
Length=1127
Score = 1637 bits (886), Expect = 0.0
Identities = 1050/1125 (93%), Gaps = 27/1125 (2%)
Strand=Plus/Plus
Query 2 ACCTCGGCT-AGATCTCACATTTATAAtctctcactctctctctttctctGGTAAATCAA 60
||||||| | | |||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1 ACCTCGG-TCAAATCTCACATTTATAATCTCTCA--CTCTCTCTTTCTCTGGT-AA--AA 54
Query 61 TAAGTGTAAGAATGGTGGCTGTGAGGCGAAGGAGAACACAAGCGTCAAACCCTAGATCCG 120
| | || || | || || || ||||| ||||| ||||||||||||||||||||||
Sbjct 55 T--G-GT-AG-CT-GT-GC---GA--CGAAGAAGAACCCAAGCGTCAAACCCTAGATCCG 102
Query 121 AACCA-C-C-GCAACACATGTCGGATCATGATTCCGATTCCGATTGGGATACAGTCTGCG 177
||||| | | |||| ||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 103 AACCACCGCAGCAATACATGGCGGA--A-GATTCCGATTCCGATTGGGATACAGTCTGCG 159
Query 178 AAGAATGCAGTTCCGGTAAACAACCAGCAAAGCTGCTTCTTTGCGACAAATGCGATAAAG 237
|||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 160 AAGAATGCAGCTCCGGGAAACAACCTGCAAAGCTCCTTCTTTGCGACAAATGCGATAAAG 219
Query 238 GGTTTCATCTT-TTCTGTCTCAGACCGATCCTCGTTTCAGTTCCCAAAGGCTCTTGGTTC 296
|||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 220 GGTTTCAT-TTATTTTGTCTCAGACCAATCCTCGTTTCAGTTCCCAAAGGCTCTTGGTTC 278
Query 297 TGCCCTTCTTGTTCCAAACATCAGATCCCTAAATCTTTCCCTCTTATTCAGACTAAAATT 356
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 279 TGCCCTTCTTGTTCCAAACACCAGATCCCTAAATCTTTCCCTCTTGTTCAGACTAAGATC 338
Query 357 ATAGATTTCTTCCGGATTAAGCGGTCTCCAGATTCATCTCAAATCTCAAGTTCTTCAGAT 416
|||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 339 ATAGATTTCTTCCGGATTAAGCGGTCACCAGACTCATCTCAAATCTCAAATTCTTCAGAT 398
Query 417 AGTATTGGGAAGAAACGGAAAAAGACTAGCTTGGTGATGTCAAAGAAGAAGAGAAGGCTT 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 399 AGTATTGGGAAGAAACGGAAAAAGAATAGCTTGGTGATGTCAAAGAAGAAGAGGAGGCTT 458
Query 477 CTTCCATACAATCCTAGCAATGATCCTCAAAGGAGGCTAGAGCAAATGGCGTCTCTGGCC 536
||||| || |||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 459 CTTCCGTATAATCCTAGCAATGATCCTCAAAGGAGACTTGAGCAAATGGCGTCTCTTGCT 518
Query 537 ACTGCGTTGAGAGCTTCCAACACCAAGTTCAGCAATGAGCTTACTTATGTATCTGGAAAG 596
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 519 ACTGCGTTGAGAGCTTCCAACACTAAGTTTAGCAATGAGCTTACTTATGTATCTGGAAAG 578
Query 597 GCTCCAAGATCTGCAAACCAAGCTGCTTTTGAGAAAGGAGGCATGCAGGTTCTATCTAAA 656
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GCTCCAGGATCTGCAAATCAAGCTGCTTTTGAGAAAGGAGGCATGCAGGTTCTATCTAAA 638
Query 657 GAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATGGACCTCGGTGAATGCCCGCCA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATGGACCTCGGTGAATGCCCGCCA 698
Query 717 CTTATGGTCGTCTTCGATCCTTATGAAGGGTTCACAGTAGAGGCGGACAGGTTTATAAAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 CTTATGGTCGTCTTCGATCCTTATGAAGGGTTCACAGTAGAGGCGGACAGGTTTATAAAA 758
Query 777 GACTGGACAATTATCACAGAGTATGTTGGAGATGTTGATTATCTGAGCAATAGAGAAGAT 836
|||||||| || ||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 759 GACTGGACCATAATCACAGAGTACGTTGGAGATGTTGATTATTTGAGCAACAGAGAAGAT 818
Query 837 GACTATGATGGAGACAGTATGATGACTCTACTTCATGCCTCTGATCCTTCGCAATGTCTC 896
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GACTATGATGGAGACAGCATGATGACTCTACTTCATGCCTCTGATCCTTCGCAATGTCTC 878
Query 897 GTAATTTGCCCTGACAGACGCAGTAACATCGCCCGGTTCATCAGTGGCATCAACAATCAC 956
|| ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 879 GTTATTTGTCCTGACAGACGCAGTAACATTGCGCGGTTTATCAGCGGCATCAACAATCAC 938
Query 957 TCACCAGAAGGGAGGAAGAAGCAGAACCTGAAGTGTGTGAGGTTCAACATCAACGGAGAA 1016
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 939 TCTCCAGAAGGAAGGAAGAAGCAGAACCTGAAGTGTGTGAGATTCAACATCAACGGAGAA 998
Query 1017 GCTAGGGTTCTTCTCGTAGCTAATAGAGACATATCGAAAGGGGAAAGATTGTATTATGAT 1076
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 999 GCTAGGGTTCTTCTCGTAGCTAATAGAGACATATCTAAAGGGGAAAGATTGTATTATGAT 1058
Query 1077 TACAACGGATATGAACATGAGTATCCAACTGAACATTTTGTATAA 1121
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1059 TACAACGGTTATGAACATGAGTATCCAACTGAACATTTTGTATAA 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5