BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24340.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489298 jgi|Araly1|489298|fgenesh2_kg.6__2432__AT5G24340.1 2416 0.0
> Ahg489298 jgi|Araly1|489298|fgenesh2_kg.6__2432__AT5G24340.1
Length=1533
Score = 2416 bits (1308), Expect = 0.0
Identities = 1462/1535 (95%), Gaps = 15/1535 (1%)
Strand=Plus/Plus
Query 24 ATGGAGACCAATCTAAAGATCTATCTAGTTTCATCCACCGACTCGTCCGAGTTCACTCAC 83
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2 ATGGAAACCAATCTAAAGATCTATCTAGTTTCATCCACCGACTCGGCCGAGTTCACTCAC 61
Query 84 CTGAAATGGTCTTTCACTCGTTCTACGATCATCGCCTTAGACGCCGAATGGAAGCCACAA 143
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 62 CTGAAATGGTCTTTCACTCGTTCTACGATCATCGCCTTAGACGCCGAATGGAAACCACAA 121
Query 144 CACTCCAATACGTCGTCGTTTCCGACCGTCACTCTCCTCCAAGTCGCATGCCGACTCAGT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CACTCCAATACGTCGTCGTTTCCGACCGTCACTCTCCTCCAAGTCGCATGCCGACTCAGT 181
Query 204 CACGCCAC----G--GAT---GTCTCCGATGTCTTCCTCATTGATTTGAGTTCGATTCAT 254
||||||| | ||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 182 TACGCCACGGATGATGATGAAGTCTCCGATGTCTTCCTCATTGACTTGACTTCGATTCAT 241
Query 255 CTTCCATCGGTTTGGGAGCTGTTGAATGATATGTTCGTGTCGCCGGATGT-TCTGAAACT 313
||||| || || |||||||| |||||||| |||||||||||||||||||| | ||||| |
Sbjct 242 CTTCCGTCTGTGTGGGAGCTATTGAATGACATGTTCGTGTCGCCGGATGTGT-TGAAATT 300
Query 314 AGGGTTTCGGTTTAAACAGGATTTGGTTTACTTGTCTTCGACATTTACTCAACATGGATG 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGGTTTCGGTTTAAACAGGATTTGGTTTACTTGTCTTCGACATTTACTCAACATGGATG 360
Query 374 TGAAGGTGGATTCCAAGAGGTGAAACAATACTTGGATATTACAAGCATATACAATTATCT 433
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TGAAGGTGGATTCCAAGAGGTGAAACAATACTTGGATATTATAAGCATATACAATTATCT 420
Query 434 GCAACATAAGCGGTTTGGGAGAAAGGCGCCAAAGGATATCAAGAGCTTGGCTGCTATATG 493
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 421 GCAACATAAGCGGTTTGGGAGAAAGGCCCCAAAGGATATCAAGAGCTTGGCAGCTATATG 480
Query 494 TAAGGAAATGCTGGACATCTCTCTCTCAAAGGAACTTCAATGTAGTGATTGGTCATATCG 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAAGGAAATGCTGGACATCTCTCTCTCAAAGGAACTTCAATGTAGTGATTGGTCATATCG 540
Query 554 TCCTCTTACAGAAGAACAGAAACTATACGCTGCCACAGATGCTCACTGCCTGCTCCAGAT 613
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TCCTCTTACAGAAGAACAGAAACTATACGCTGCCACAGATGCTCACTGCTTGCTCCAGAT 600
Query 614 ATTCGATGTATTTGAGGCGCATCTTGTTGAAGGAATCACAGTGCAAGAT-CTTAGAGTGA 672
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 601 ATTCGATGTATTTAAGGCGCATCTTGTTGAAGGAATCACAGTGCAAGATTCT-AGAGAGA 659
Query 673 TAAATGTTGGCTTACAAGAAATTCTGACTGAATCGGACTATAGCAGTAAGATTGTCACAG 732
|||||||||||||||||||||||| |||| ||| || |||| ||||||||||||||| |
Sbjct 660 AAAATGTTGGCTTACAAGAAATTCTTACTGGATCAGATTATACCAGTAAGATTGTCACGG 719
Query 733 TCAAACTTTGCAAGGCTACAGATGTAATCAGATCAATGTCGGAAAATGGTCAAAACATAG 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCAAACTTTGCAAGGCTACAGATGTAATCAGATCAATGTCGGAAAATGGTCAAAACATAG 779
Query 793 CCAATGGAGTGGTTCCAAGAAAAACGACACTAAACACGATGCCAATGGATGAGAATTTGT 852
|||||||||||||| | |||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 780 CCAATGGAGTGGTTTCTAGAAAAACAACACTAAACACGATGCCGATGGATGAGAATCTGT 839
Query 853 TGAAGATTGTCAGGAAGTTTGGAGAACGGATCCTGTTGAAGGAGTCTGATCTTCTACCAA 912
|||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct 840 TGAAGATTGTCAGGAAGTATGGAGAAAGGATCCTGTTGAAGGAATCTGATCTTCTACCAA 899
Query 913 AGAAACTTAAGAAGAAAACAAGAAGACGTGTCGCCTCAAGCACTATGAACACAAATAAGC 972
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 900 AGAAACTCAAGAAGAAAACAAGAAGACGTGTCTCCTCAAGCTCTATGAACACAAATAAGC 959
Query 973 AGTTGGTCTGTTCTGCGGACTGGCAAGGTCCACCGCCATGGGAC-TCATCTTTAGGCGGT 1031
| |||||||||||||| ||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 960 ATTTGGTCTGTTCTGCAGACTGGCAAGGCCCACCCCCATGGGACCT-ATCTTTAGGCGGT 1018
Query 1032 GATGGCTGCCCTAAATTTCTATTGGATGTGATGGTTGAAGGTTTGGCGAAACATCTACGT 1091
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GATGGCTGCCCTAAATTTCTTTTGGATGTGATGGTTGAAGGTTTGGCGAAACATCTACGT 1078
Query 1092 TGTGTGGGGATTGATGCTGCAATCCCACACTCAAAGAAGCCGGATTCAAGGGAGTTGCTT 1151
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGTGTGGGGATTGATGCTGCAATTCCACACTCAAAGAAGCCGGATTCAAGGGAGTTGCTT 1138
Query 1152 GATCAAGCATTCAAAGAGAACAGAGTTCTATTAACAAGAGATACAAAATTGTTGAGACAC 1211
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 1139 GATCAAGCATTCAAAGAGAAGAGAATTCTATTGACAAGAGATACAAAATTGTTGAGACAC 1198
Query 1212 CAGGATTTGGCAAAGCATCAAATATATCGAGTAAAGAGTCTTCTTAAAAATGAGCAGCTA 1271
|| |||||||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||
Sbjct 1199 CAAGATTTGGCAAAGCACCAAATATATAGAGTCAAGAGCCTTCTAAAAAATGAGCAGCTA 1258
Query 1272 CTTGAGGTGATAGAGACTTTCCAGCTAAAGATCAGCGGAAATCAGCTGATGTCCAGATGT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1259 CTTGAGGTGATAGAGACTTTCCAGCTAAAGATCAGCGGAAATCAGCTGATGTCAAGATGT 1318
Query 1332 ACGAAGTGCAATGGGAAATTTATTCAGAAACCTCTAAGCATTGAAGAAGCTATTGAAGCA 1391
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACGAAATGCAATGGGAAATTTATTCAGAAACCTCTAAGCATTGAAGAAGCTATTGAAGCA 1378
Query 1392 GCAAAGGGTTTCCAAAGAATACCCAACTGCTTATTTAACAAAAATTTAGAGTTTTGGCAG 1451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GCAAAGGGTTTCCAAAGAATACCCAACTGCTTATTTAACAAAAATTTAGAGTTTTGGCAA 1438
Query 1452 TGCATGAACTGCCATCAACTATACTGGGAGGGAACTCAGTATCATAACGCAGTCCAGAAG 1511
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1439 TGCATGAACTGCCATCAGCTATACTGGGAGGGAACCCAGTATCATAACGCAGTCCAGAAG 1498
Query 1512 TTCATGGAAGTATGCAAGTTGAGTGAGTGATTCAC 1546
|||||||||||||| ||||||||||||||||||||
Sbjct 1499 TTCATGGAAGTATGTAAGTTGAGTGAGTGATTCAC 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5