BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24360.2
Length=3007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489300 jgi|Araly1|489300|fgenesh2_kg.6__2434__AT5G24360.1 2604 0.0
> Ahg489300 jgi|Araly1|489300|fgenesh2_kg.6__2434__AT5G24360.1
Length=2869
Score = 2604 bits (1410), Expect = 0.0
Identities = 1604/1695 (95%), Gaps = 24/1695 (1%)
Strand=Plus/Plus
Query 1312 TCACAGATATTATTGATGGAAGCACGAAACAGGCAGGCTTTGCTAGCAAATTTTCTGGTT 1371
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1184 TCACAGATATTATTGATGGAAGCACTACACAGGCAGGCTTTGCTAGCAAATTTTCTGGTT 1243
Query 1372 TGATTGTTCTAATTTTCGGCTTTTGTGTTACTATGCTTTCGGTTTGCGGCCTTTTCTTTT 1431
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1244 TGATTGTTCTACTTTTCGGCTTTTGTGTTACTATGCTTTCTTTTTGCGGCCTTTTCTTTT 1303
Query 1432 ACCGATTAAGACAGAGCATTCGGATCAAGGAACCATATGTATCTGAAGTGCCAATCGCGA 1491
|||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||
Sbjct 1304 GCCGATTAAGACAGAGCATGCGGATCAAGGATCCTTATGTATCGGAAGTTCCAATCGCGA 1363
Query 1492 CACCGAAGAAGAAAAAATCCAAGAAAAATGGTACTACAAAGGCGGTTCACAAGAAAGAGA 1551
||| ||||||||||| |||||||||||||| | | ||||||||||||||
Sbjct 1364 TACCAAAGAAGAAAAAGTCCAAGAAAAATGG---------GAC---TCACAAGAAAGAGA 1411
Query 1552 ATGGATTTATATCTGGAGGGAACAAAGATCCCTCTCATGAGGAGAATGAGAAGAGATTAC 1611
| || |||||||||||||||||||| |||||||| |||| |||||||| ||||||||||
Sbjct 1412 ACGGGCTTATATCTGGAGGGAACAAACATCCCTCTAATGAAGAGAATGATAAGAGATTAC 1471
Query 1612 TTACTGCTTTCCCTGGCCTC---AATAATAGTTCAGCAGAAGGATATAGGGTTGGTAAAC 1668
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1472 TTACTACTTTCCCTGGCCTCAATAATAATAGTTCAGCAGAAGGATATAGGGTTGGTAAAC 1531
Query 1669 TGTTTGTCTCCAACAAGGAGATTGCTAAAGGGAGCAATGGAACTGTTGTTCTTGAGGGAT 1728
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1532 TGTTTGTCTCCAACAAGGAGATTGCTAAAGGGAGTAATGGAACTGTTGTGCTTGAGGGAT 1591
Query 1729 CCTATGAAGGTCGTCTTGTAGCGGTTAAGCGTCTAGTACAATCACACCATGATGTGGCTC 1788
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1592 CCTATGAAGGTCGTCTTGTAGCGGTTAAGCGTCTAGTACAATCACATCATGATGTGGCTC 1651
Query 1789 AGAAGGAGATTTTGAATCTCATGGCCTCAGACAAACATTCAAATATTGTCCGCTGGTACG 1848
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1652 AGAAGGAGATTTTGAATCTCATGGCCTCGGACAAACATCCAAATATTGTCCGCTGGTACG 1711
Query 1849 GGGTTGACCAGGACGAACATTTTATCTATATTTCATTGGAACTGTGTGCTTGTAGCTTAA 1908
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1712 GGGTTGACCAGGACGAACATTTTATCTATATTTCATTAGAACGGTGTGCTTGTAGCTTAA 1771
Query 1909 ACGATCTCATCTATGCATCATCTGCACTACTTGAGAGTCCAATGGCTTCAAGTAGTATAC 1968
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 1772 ACGATCTCATCTATGCATCCTCTGCACTGCTTGAGAGTCCAGTGGCTTCAAGTAGTATAC 1831
Query 1969 ATTCGATTCAGATAAACCCAATCTTTGAGAATGGCAAGGGAGTTGAGCTATGGAAGGAAA 2028
| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1832 AACCGATTCAGAGAAACCCAATCTTTGAAAATGGCAAGGGAGTTGAGCTATGGAAGGAAA 1891
Query 2029 ACGGACATCCTTCTCCTGTTTTGTTGAAGTTAATGAGGGATATAGTTGCTGGTCTAGTTC 2088
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1892 ACGGACATCCGTCTCCTGTTTTGTTGAAGTTAATGAGTGATATAGTTGCTGGTCTAGTTC 1951
Query 2089 ATTTGCATGATATTGGAATCGTACATCGAGATCTAAAGCCTCAAAATGTGTTGATTGTTA 2148
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1952 ATTTGCATGATATTGGAATCGTACATCGGGATCTAAAACCTCAAAATGTGTTGATTGTTA 2011
Query 2149 AGAACTCATCTCTATGTGCAAAGCTATCAGATATGGGTATTAGCAAGCGCTTGCCAGCCG 2208
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 AGAACTCATCTGTATGTGCAAAGCTATCAGATATGGGTATTAGCAAGCGCTTGCCAGCCG 2071
Query 2209 ACACAAGTGCCTTGACTAGAAACTCAACTGGTTTAGGTTCTGGAAGTTCTGGGTGGCAAG 2268
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2072 ACACAAGTGCCTTGACTAGAAACTCAAC-----T-GGTTCTGGAAGTTCTGGGTGGCAAG 2125
Query 2269 CACCTGAACAACTCCGCAATGAACGACAAACAAGAGCGGTTGATCTCTTCAGTTTAGGGT 2328
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2126 CACCTGAACAACTCCGCAATGAACGACAAACAAGAGCCGTTGATCTCTTCAGTTTAGGGT 2185
Query 2329 GTGTTCTGTTTTTCTGTATGACTGGAGGTAAACATCCTTACGGAGACAATTATGAGAGGG 2388
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2186 GTGTTCTATTTTTCTGTATGACTGCAGGTAAACATCCTTACGGAGACAATTATGAGAGGG 2245
Query 2389 ACGTAAACGTTTTGAATGATC-AAAAGGATCTTTTCTTGATCGAGAGTCTTCCAGAAGCT 2447
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2246 ACGTAAACGTTTTGAATGATCGAAAA-GATCTTTTCTTGATCGAGAGTCTTCCAGAAGCT 2304
Query 2448 GTTCATCTTCTCACTGGTCTCCTAAACCCGGATCCAAATTTGAGACCGAGAGCACAAGAT 2507
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2305 GTTCATCTTCTCTCTGGTCTCCTGAACCCGGATCCAAATTTGAGACCGAGAGCACAAGAA 2364
Query 2508 GTTATGCATCATCCATTGTTCTGGAACTCTGACATGAGACTGTCTTTTCTTCGGGATGCA 2567
||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2365 GTTCTGCATCATCCATTGTTCTGGAACTCTGACATGAGACTGTCTTTCCTCCGGGATGCA 2424
Query 2568 AGCGATAGAGTTGAACTGGAAAACCGAGAAGAAGGTTCACAGCTCTTGGCTGCACTTGAA 2627
|| |||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2425 AGTGATAGAGTCGAATTGGAAAACCGAGAGGAAGGCTCACAGCTCTTGGCTGCACTTGAA 2484
Query 2628 AGCACAGCAGCGGTTACTTTAAATGGGCGGTGGGATGAGAAACTGGATAGCATATTCCTA 2687
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2485 AGCACAGCAGCGGTTACATTAAACGGGCGGTGGGATGAGAAACTGGATAGCATATTCCTA 2544
Query 2688 GACAATATCGGGCGATACAGGCGGTACAAGTTTGACAGCATCCGCGATTTGTTACGGGTC 2747
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2545 GACAATATCGGGCGTTACAGGCGGTACAAGTTTGACAGCATCCGCGATTTGTTACGGGTC 2604
Query 2748 ATACGGAACAAACTGAATCACTATAGAGAGCTTCCAAAAGAATTACAGGAACTACTTGGG 2807
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2605 ATAAGGAACAAACTGAATCACTATAGAGAGCTTCCAAAAGAATTACAGGAACTACTTGGG 2664
Query 2808 AGTGTACCTGAAGGGTTCGAGAGGTACTTCTCTAGCAGGTTCCCAAAACTGTTGATTCAG 2867
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2665 AGTGTACCAGAAGGGTTTGAGAGGTACTTCTCAAGCAGGTTCCCAAAACTGTTGATTCAG 2724
Query 2868 GTTTATACAGTTTTATTTGATTACTGTAACAATGAAGAGTTCTTTTTCAAGTACTCTAAG 2927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2725 GTTTATACAGTTTTATTTGATTACTGTAACAATGAAGAGTTCTTTTTCAAGTACTCTAAG 2784
Query 2928 ACCACTGTATTCTAGGATTCTTTTCTTCTGTTGGCTCTCTCTGTATAATAGGGATTTACT 2987
||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 2785 ACCACTGTATTTTAGGATTATTTTCTTCTGTTGACTCTCTCTGTATAATAGGGATTTACT 2844
Query 2988 -AATAAAGAGCTACA 3001
||||||| ||||||
Sbjct 2845 TAATAAAGTGCTACA 2859
Score = 1195 bits (647), Expect = 0.0
Identities = 801/872 (92%), Gaps = 24/872 (3%)
Strand=Plus/Plus
Query 427 GAGAATCTGGTTATGTATTGGTTTCTACGGTAGATGGATCGATATCTTTGGTGGATATGT 486
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GAGAATCTGGTTATGTGTTGGTTTCTACGGTAGATGGATCGATATCTTTGGTGGATATGT 373
Query 487 CTTCACAGAAGCTAGATTGGACATTCCATACCAATGAGCCTATATATTCGTCTTACCAAG 546
| || |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 374 CCTCTCAGAAGCTGGATTGGACATTTCATACCAATGAGCCGATATATTCGTCTTACCAAG 433
Query 547 CTCCTCATTATCATTACACCACTGATGAAGAACGTTCCTCGGTGCTTGGTGATGACTTTT 606
|||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 434 CTCCTCATTATCATTATACCACTGATGAGGAACGTGCCTCGGCGCTTGGTGATGACTTTT 493
Query 607 ACATGGATTGTGATAAAGATTGGCGTCTTTACAATTCCTCTGTACGAAAAGGAAAACGCG 666
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 494 ACATGGATTGTGATAAAGATTGGCGTCTTTTCAATTCCTCTATGCGAAAAGGAAAACGCG 553
Query 667 TTAATGAGATAGTGGATGCTTCGGAGTTTATTGGTACGTTGCCATACACATCGACGGATA 726
| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 554 TAAATGAGATAGTGGATGCTTCGGAGTTCATTGGAACACTGCCATACACATCGACGGATA 613
Query 727 GGATTGTTTTAGGTAAAAAGGATACATCTGTGTTTCTCTTGGATTGGAAGACTGGGAAGT 786
|||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 614 GGATTGTTTTGGGGAAAAAGGACACATCTGTATTTCTCTTGGATTGGAAGACTGGGAAAT 673
Query 787 TAGTTAAGAGGTATAGAATGGACGAGCTGTATTCTAATACAGTTGTTGAAAATGATAAAG 846
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 674 TAGTTAAGAGGTATAGAATGGACGAGCTGTATTCTAATACAGTCGTTGAAAATGATAAAG 733
Query 847 AGAAGGCTATTGTTTTGTCTAAAGAAGCTCCTTTACTATTTGGATCGGGGTTTAAGAAAT 906
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 734 AGAAGGCTATTGTTTTGTCTAAAGAAGCTCCGATACTATTTGGATCAGGGTTTAAGGAAT 793
Query 907 CGGAAGATTTTCCTGAGCTGGTTTATATTGAGAGAAAAGATTTTAAAATACAATGTATAT 966
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 794 CGGAAGATCTTCCTGAGCTGGTTTATATTGAGAGAAAAGATTTTAAAATCCAATGTATAT 853
Query 967 CAAAGTTTGGAGATGTTTTGTGGAGTGTTTCTTATGCTAAGATGGAAGCTAAACTACAGA 1026
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 854 CAAAGTTTGGAGATGTTTTGTGGAGTGTTTCTTATGCTAAGATGGAAGCTAAACTACAAA 913
Query 1027 ATCATGAGAGCGTACAGTTCATCAGTGGGTTATCATCATCAG-TGG-----------G-- 1072
| |||||||||||||| |||| |||||||||||||||||| ||| |
Sbjct 914 ACCATGAGAGCGTACACCTCATGGGTGGGTTATCATCATCAGATGGTATTCCTATTAGAA 973
Query 1073 ------G---AAAAA-CCAGTTCCCGCTGTCTTATACGACAAGTGTTCCTATGGTACAGT 1122
| ||||| ||| |||||||| || |||||||||||||||||| |||||||||
Sbjct 974 CTTCTTGGGGAAAAAACCATTTCCCGCTATCCTATACGACAAGTGTTCCTGTGGTACAGT 1033
Query 1123 TACGTAATGTTAAGTATGAAACACTGTTTCCGAGACTTGGTTTTCTAGACGAGGCGTTGT 1182
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TACGTAATGTTAACTATGAAACACTGTTTCCGAGACTTGGTTTTCTAGACGAGGCGTTGT 1093
Query 1183 ATCTTCCGTTTCAAGATAGAAAACCTAATCAGTTGGCTATTGGAGATGGGAATCAGTTGA 1242
||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1094 ATCTTCCCTTTCAAGATAGAAAACCTAATCGGTTGGCTCCTGGAGATGGGAATCAGTTGG 1153
Query 1243 CACTTCCGGGCAATAAAGAGGCTGAAGAAGTC 1274
|||||||| |||||||||||||||||||||||
Sbjct 1154 CACTTCCGAGCAATAAAGAGGCTGAAGAAGTC 1185
Score = 414 bits (224), Expect = 2e-114
Identities = 289/319 (91%), Gaps = 9/319 (3%)
Strand=Plus/Plus
Query 4 ATTTCATTTCCGACAGC-AAATTTGCGAAGTCAAATCGCGTAATC-AAACTTCAGTTTTG 61
|||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 ATTTTATTTCCGACAGCAAAATTTGCGAAGTCAAATCGCGTAATCTCTAGTTCAGTTTTG 60
Query 62 TTCCGTTTTCGAATTCTCCATTTCGTATAGGAGATCTCCATAAACCCTAATCCCCTC-AG 120
||||| ||||||| |||| ||| ||| ||||||||||||||||||||||| |||||| ||
Sbjct 61 TTCCG-TTTCGAAATCTCAATTCCGTGTAGGAGATCTCCATAAACCCTAACCCCCTCAAG 119
Query 121 AGTGCATCTAACATTCGATTGTGTTTTTCTCTATTCAAAGAAGAAATTTTCATGGTTTTC 180
||||| | || || |||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 120 -GTGCAGCCAAAATCCGATTGTG-TTTTCTCTATTCAAAAAAGAAA-TTTCATGGTTTTC 176
Query 181 TAAAGCGATGAGAGGATCTGCACTACTTGATTTGATAT-TGTTCCTTCTCGTATCTCCAT 239
||||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 177 TAAAGAGATGAGAGGATCTGCACTACTTGATTTGAT-TCTGTTCCTGCTCGTATCTCCAT 235
Query 240 TAGCACACAGCTTCAAAGGATCTGAAATCTCCAAGTTCTATGACAAATCTATCTCCAATC 299
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 236 TAGCACACAGCTTCAAAGGATCTGAAATCTCCAAATTCTATGACAAATCCATTTCCAATC 295
Query 300 AAATCTCTCAATCCGATCG 318
|||||||||| |||||||
Sbjct 296 AAATCTCTCAGCCCGATCG 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113547020345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5