BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24370.1
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941987 jgi|Araly1|941987|scaffold_602531.1 811 0.0
> Ahg941987 jgi|Araly1|941987|scaffold_602531.1
Length=635
Score = 811 bits (439), Expect = 0.0
Identities = 533/577 (92%), Gaps = 12/577 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCACTATATGAATATGAATCTGATCATCACTAGTCTTGTGATGATCTTGATTTCA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGACTCACTATATGAATATGAATCTGATCATCACTAGTCTTGTGATGATCTTGATTTCA 81
Query 61 CATTTGCCTTTTTCCTCAACTGTGAATCCAGACAAACCAACAAAGTCTATAATCGACAGA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CAATTGCCTTTTTCCTCAACTGTGAATCCAGACAAACCAACAAAGTCTATAATCGACAGA 141
Query 121 ATCTGCAACCAAACAGTGAACTTCAATGAGTG--TGAATTGATTGTCACGTCACAGCTAC 178
|||||| |||||||||||||||| ||||| || | ||| |||||||||||||||||||
Sbjct 142 ATCTGCCACCAAACAGTGAACTTTAATGACTGCAT-AAT-GATTGTCACGTCACAGCTAA 199
Query 179 ACTCGCCGCACGCAAATATAGCGACCATAACGGAA-GTGATGACAAAAAGAGCTCTGACG 237
| |||||||||||||| || |||||||||||| || |||| |||||||||||||||||||
Sbjct 200 ATTCGCCGCACGCAAACATCGCGACCATAACG-AACGTGACGACAAAAAGAGCTCTGACG 258
Query 238 TTTGCTACGGAGACGGTTTCTCAAATCCAAGACTATCTTCTCCCAAACGCTACAGATACT 297
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 259 TTTGCTACGGAGACGCTTTCTCAAATCCAAGACTATCTTCTCCCAAATGCTACAGATCCT 318
Query 298 CAGGACAAAGCCGTTTTCTCCGCTTGCGAGATCGCGTACAAAGCCGTGGTTTCTCGTCTT 357
| ||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||
Sbjct 319 GATGACAAAGCCGTTTTCTCGGCTTGCGAGGTCGCTTACAAAGCCGTGGTTTCTAGTCTT 378
Query 358 CAGAGTGCTTATACGTCGATGAAGAA-CAGTGATTACGTGGCGATGAAGGCACAGCAGAA 416
|| ||||||||||||||| |||| || | ||||||||||| |||||||||||||||||||
Sbjct 379 CAAAGTGCTTATACGTCGGTGAACAAAC-GTGATTACGTGTCGATGAAGGCACAGCAGAA 437
Query 417 TCAAGCACTTGGGTATATTGATGTGTGTGTTGA-GAGGACTAACTTCTTTCGCCGGACTC 475
|||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 438 TCAAGCACTTAGGTATATTGATGTGTGTGA-GAAGAGGACTAACTTCTTTCGCCGGACTC 496
Query 476 CGATGGTAGCAGCCAACTATTATGTGAGGTTGACGGCGAAGATTGCTTCCATTGCAGGCC 535
|||| ||||||| ||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 497 CGATTGTAGCAGTCAACTATTACGTGAGGTTGATGGTGAAGATTGCTTCCATTGCAGGCC 556
Query 536 AGATCCTTGCTCCTAGTACGACCACGTCC-CTGTCCC 571
|||||||||||||| |||||||| ||||| | |||||
Sbjct 557 AGATCCTTGCTCCTTGTACGACCCCGTCCAC-GTCCC 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21061885128
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5