BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24380.1
Length=2378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489303 jgi|Araly1|489303|fgenesh2_kg.6__2437__AT5G24380.1 3502 0.0
> Ahg489303 jgi|Araly1|489303|fgenesh2_kg.6__2437__AT5G24380.1
Length=2342
Score = 3502 bits (1896), Expect = 0.0
Identities = 2167/2296 (94%), Gaps = 25/2296 (1%)
Strand=Plus/Plus
Query 16 cttcttcttcttcttcttcCATCTTACGCCAAACCTCGAGTCTGCGAATCATTCGATTCT 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTCTTCTTCTTCCATCTTACGCCAAACCTCGAGTCTGCGAATCATTCGATTCT 60
Query 76 CAGATTCGCATATTTTCTTCGAATTCGCTAGGCTCAAAACGTTGTTTCCGTGTACAAGAA 135
|||||| |||| ||||| |||||| || || ||||||| |||||||||||||| ||||
Sbjct 61 CAGATTGGCATCTTTTCCACGAATT-GC-CGGATCAAAACATTGTTTCCGTGTACGAGAA 118
Query 136 GCAACCTAACGATTTGGGGCCAG-GTGAA-GGAAGAGCTGATTTAGGTTATTGAGATTCG 193
|||||||||||||||| || ||| |||| |||| | | |||||||||||||||
Sbjct 119 GCAACCTAACGATTTGTGG-CAGCTTGAATTCCAGAGAT-CTCTAGGTTATTGAGATT-T 175
Query 194 TTTTCTTCAAATGGAAAACGAAAGGGTTGAGAGAGAACAGAGCCAATTTCAGGAAGACGA 253
||||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 176 TTTTCCACAAATGGAGAACGAGAGGGTTGAGAGAGAACAGAACCAATTTCAAGAAGACGA 235
Query 254 GTTTATCGATTCGAGAAAACCACCGCCATGGAGGAAACAGATCACGGTTCGAGCGATCGT 313
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 GTTTATCGATTCGAGAAAACCACCGCCATGGAGGAAACAGATCACGGTTCGAGCCATCGT 295
Query 314 CGCGAGTTTATTGATAGGGATTGTCTACAGTGTGATCTGTCTGAAGCTGAATCTAACGAC 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CGCGAGTTTATTGATAGGGATTGTCTACAGTGTGATCTGTCTGAAGCTGAATCTAACGAC 355
Query 374 AGGACTCGTACCGAATCTCAACATCTCATCAGCTCTCTTGGCTTTTGT-TTTCCTCAAAT 432
|||||||||||||||||| |||||||||||||||||||||||||| || ||| |||||||
Sbjct 356 AGGACTCGTACCGAATCTAAACATCTCATCAGCTCTCTTGGCTTTCGTCTTT-CTCAAAT 414
Query 433 CATGGACCAAAGTTCTTCAAAAAGCCGGAATCGCCACGACGCCTTTCACACGTCAAGAGA 492
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTTGGACCAAAGTTCTTCAAAAAGCCGGAATCGCCACGACGCCTTTCACACGTCAAGAGA 474
Query 493 ACACTATTGCTCAAACTTGTGCTGTTGCTTGTTACAGCATCTCTCTTGCAGGTGGATTTG 552
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 475 ATACTATTGCTCAAACTTGTGCTGTTGCTTGTTACAGCATCTCCCTTGCAGGTGGATTTG 534
Query 553 CATCGTATTTGTTGGGTTTGAATAGACGAACTTACGAGGAGACAGGAGTGAACACCGAAG 612
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 535 CATCGTATTTGTTGGGTTTGAATAGACGAACTTACGAGCTTACGGGAGTGAACACTGAAG 594
Query 613 GAAACAATCCTCGTGGTATAAAAGAGCCCGGTGTTGGATGGATGACATCATTCCTCTTCG 672
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 595 GAAACAATCCTCGTGGTATAAAAGAGCCTGGTGTTGGATGGATGACATCATTCCTCTTTG 654
Query 673 TTACTAGCTTCATTGGACTTGTTGTATTGGTACCTCTTCGAAAGGTGATGATTATAGACT 732
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCACTAGTTTCATTGGACTAGTTGTATTGGTACCTCTTCGAAAGGTGATGATTATAGACT 714
Query 733 ACAAGCTAACTTATCCTAGTGGAACGGCAACAGCTGTTCTTATAAATGGATTTCATACTA 792
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 ACAAGCTAACGTATCCGAGTGGAACAGCAACAGCTGTTCTTATAAATGGATTTCATACTA 774
Query 793 GCAAAGGAGATAAGACAGCCAAGAAACAGATTCGCGGGTTTATAAAATCGTTTGGTTTGA 852
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GCAAAGGAAATAAGACAGCCAAGAAACAGATTCGCGGGTTTATAAAATCGTTTGGTTTGA 834
Query 853 GTTTCTTTTGGGCATTCTTTGGATGGTTCTATTCAGGTGGTGAAAAATGCGGATTCTCTC 912
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 835 GTTTCTTTTGGGCATTCTTTGGATGGTTTTATTCAGGTGGTGACAAATGCGGATTCTCTC 894
Query 913 AGTTCCCTACATTTGGGTTACAAGCTTTGGACAAAA-CATTCTACTTTGACTTCAGTATG 971
|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 895 AGTTCCCTACATTTGGATTACAAGCTTTGGA-AAAATCATTCTACTTTGACTTCAGTATG 953
Query 972 ACATATGTTGGAGCTGGGATGATTTGTTCTCATTTGGTGAATCTGTCGTTGCTCTTCGGT 1031
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 954 ACATATGTTGGAGCTGGGATGATTTGTTCGCATTTGGTGAATCTATCGTTGCTCTTCGGT 1013
Query 1032 GCCATCCTCTCGTGGGGAATCATGTGGCCTCTCATAGCCCGGCTTAAAGGCGAATGGTTC 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GCCATCCTCTCGTGGGGAATCATGTGGCCTCTCATAGCCCGGCTTAAAGGCGAATGGTTC 1073
Query 1092 CCTGCAACATT-GAAAGATAATAGTATGCAGGGCTTAAACGGCTACAAGGTGTTTATATG 1150
||||||||||| |||| | | ||| |||||||||||||| ||||||||||||||||||||
Sbjct 1074 CCTGCAACATTGGAAA-AGACTAGCATGCAGGGCTTAAATGGCTACAAGGTGTTTATATG 1132
Query 1151 CATTGCACTGATCTTAGGAGATGGGCTTTATAACTTCGTTAAGATACTCTTT-TTCACTG 1209
||||||| |||||||||||||||| |||||||||||| | |||||||| ||| |||||||
Sbjct 1133 CATTGCATTGATCTTAGGAGATGGACTTTATAACTTCCTCAAGATACT-TTTCTTCACTG 1191
Query 1210 GAAGAAGCTTCCACTCTAGACTCTCCAAAACCAACAGCATCAGCACATTGGTAGAAGTTC 1269
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAAGAAGCTTCCACTCAAGACTCTCCAAAACCAACAGCATCAGCACATTGGTAGAAGTTC 1251
Query 1270 CAGAAGATAGCACGAAAGAATCCGATAACCTGAAACGAGAGAATGAAGTGTTCGTTCGAG 1329
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CAGAAGATGGCACAAAAGAATCCGATAACCTGAAACGAGAGAATGAAGTGTTCGTTCGAG 1311
Query 1330 AGAGCATTCCGCTATGGATGGCTTGTGTCGGATACTTATTCTTCTCCCTTGTCTCCATCA 1389
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1312 AGAGCATTCCGCTATGGATGGCTTGTGTAGGATACGTATTCTTCTCCCTTGTCTCCATCA 1371
Query 1390 TTGCCATCCCTCTGATGTTCCCTCAGCTGAAATGGTACTTCGTCCTCGTAGCTTACCTCC 1449
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1372 TTGCGATCCCTCTGATGTTCCCTCAGTTGAAATGGTACTTCGTCCTCGTAGCTTACCTCC 1431
Query 1450 TCGCCCCGTCTCTCAGCTTCTGTAACGCCTATGGAGCTGGCTTAACGGATATGAACATGG 1509
| |||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1432 TTGCCCCGTCCCTCAGCTTCTGTAACGCGTATGGAGCCGGGTTAACGGATATGAACATGG 1491
Query 1510 CTTACAACTATGGTAAAGCGGCGCTCTTTGTGATGGCGGCACTGGCAGGAAAAAACGATG 1569
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1492 CTTACAACTACGGTAAAGCAGCGCTCTTTGTGATGGCAGCACTGGCAGGAAAAAACGATG 1551
Query 1570 GAGTGGTGGCTGGGATGGTTGCTTGTGGTCTCATCAAATCAATTGTCTCTGTCTCAGCTG 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1552 GAGTGGTGGCTGGGATGGTTGCTTGTGGTCTCATCAAATCAATTGTCTCTGTCTCGGCTG 1611
Query 1630 ACCTGATGCATGATTTCAAGACGGGACATCTTACGCAAACCTCGCCCCGCTCAATGCTTG 1689
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1612 ACCTGATGCATGATTTCAAGACAGGACATCTAACGCAAACCTCGCCCCGCTCGATGCTTG 1671
Query 1690 TTGCACAAGCCATAGGGACAGCGATAGGCTGCGTGGTTGCGCCACTCACCTTCTTCCTCT 1749
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1672 TTGCACAAGCCATCGGGACAGCGATAGGCTGCGTGGTCGCACCACTCACCTTCTTCCTCT 1731
Query 1750 TCTACAAGGCGTTTGATGTTGGAAACCAAAATGGTGAATACAAAGCTCCTTATGCTATGA 1809
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1732 TCTACAAGGCGTTTGATGTTGGAAACCAAAATGGTGAATACAAGGCTCCTTATGCTATGA 1791
Query 1810 TATACAGAAACATGGCTATTATCGGTGTTCAAGGTCCCTCCGCTC-TCCCCAAGCATTGC 1868
| |||||||||||||| ||||||||||||||||||| ||| |||| ||||| ||||||||
Sbjct 1792 TTTACAGAAACATGGCCATTATCGGTGTTCAAGGTCTCTCGGCTCTTCCCC-AGCATTGC 1850
Query 1869 CTAGAGCTTTGCTACGGATTCTTTGCCTTTGCGGTTGCTGCCAACTTGGCAAGAGACCTC 1928
|| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1851 CTGGAGCTTTGCTACGGATTCTTTGCCTTTGCGGTTGTTGCCAACCTGGCAAGAGACCTG 1910
Query 1929 TTACCAGATAAGCCAGGGAAGTGGATCCCACTCCCGATGGCAATGGCTGTACCGTTCCTG 1988
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 TTGCCAGATAGGCCGGGGAAGTGGATCCCACTCCCGATGGCAATGGCTGTACCGTTCCTG 1970
Query 1989 GTGGGTGGGTCGTTCGCAATCGATATGTGTATCGGGAGCT-TAGTGGTATACGTTTGGAA 2047
|||||||||||||| ||||||||||||||||||||||| | | ||||||| ||||||| |
Sbjct 1971 GTGGGTGGGTCGTTTGCAATCGATATGTGTATCGGGAG-TGTTGTGGTATTCGTTTGGCA 2029
Query 2048 AAAGGTGAATCGTAAGAAGGCAGATGTGATGGTTCCAGCTGTTGCATCAGGTTTGATATG 2107
|||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2030 GAAGGTGAACCGTAAGAAGGCAGATGTGATGATTCCGGCTGTTGCATCAGGTTTGATATG 2089
Query 2108 TGGAGATGGTCTCTGGATTCTGCCTTCTTCTTTGCTGGCTCTGGCTAAGGTTAGACCTCC 2167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 TGGAGATGGTCTCTGGATTCTGCCTTCTTCTTTGCTGGCTCTGGCTAAGGTTAGACCTCC 2149
Query 2168 TATCTGTATGAACTTCACTGCGGCTCATTAAGGCAGAAAGA-TTTTCCAGACAAAACCCG 2226
|||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||
Sbjct 2150 TATCTGTATGAACTTCACTGCGGCTCATTAAGGCGGAGAGAATTTTC-AGACAAAACCCG 2208
Query 2227 AACTTACCGCCGGAG-AA--A-TGTATAGTAGATGTGGTTAGGTTAGGAGTAGACAGTTA 2282
|||||| ||||||| || | |||||| |||||||||||||||||||||||||||||||
Sbjct 2209 AACTTATTGCCGGAGGAATGAATGTATACTAGATGTGGTTAGGTTAGGAGTAGACAGTTA 2268
Query 2283 AAGAGGGATGAAACCA 2298
||||||||| ||||||
Sbjct 2269 AAGAGGGATTAAACCA 2284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89588256240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5