BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24390.1
Length=2236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489304 jgi|Araly1|489304|fgenesh2_kg.6__2438__AT5G24390.1 2379 0.0
> Ahg489304 jgi|Araly1|489304|fgenesh2_kg.6__2438__AT5G24390.1
Length=2101
Score = 2379 bits (1288), Expect = 0.0
Identities = 1500/1601 (94%), Gaps = 19/1601 (1%)
Strand=Plus/Plus
Query 244 TGGGTTTCGATGAAAGCTC-TACGAAGAATACAAACGAAGTCTACGTTTCCAAATCCTTC 302
||||||||||||||||||| || ||||||| ||||||| |||| ||||||| ||||||||
Sbjct 212 TGGGTTTCGATGAAAGCTCTTA-GAAGAATTCAAACGAGGTCTTCGTTTCCTAATCCTTC 270
Query 303 TTCTCCGTCATCTCCGTGGACTCATTTGCGttctgctttcgtccttgttacttcttcttc 362
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 271 TTCTCCGTCATCTCCGTGGACTCATTTGCGTTCTGCTTTCGTAATTGTTACTTCTTCTTC 330
Query 363 tccagcttcttgttcttcttcttctGATCCGCATCGGCTTAAATCGCCCTGGTCCCGGAG 422
||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 331 TCCTGCTTCTTG---TTCTTCTTCTGATCCGCATAGGCTAAAATCGCCCTGGTCCCGAAG 387
Query 423 AAAAGGGAAA-AAACCACTCACACTTCGCCGGTGGAGAAGATGTTTCAC-CCCTGAGGGT 480
|||| |||| ||||| ||||||||||||||||||||||| | |||||| ||| ||||||
Sbjct 388 AAAA-CGAAAGAAACCCCTCACACTTCGCCGGTGGAGAAGGTTTTTCACTCCC-GAGGGT 445
Query 481 AGAATTCGGAATGGGGGAGTTGATTTGTTGAAGAAAGTTCGGACTAGAGGCATTGATCCT 540
||| ||||||| || ||||| ||||| ||||||||||| |||| ||||||||||||||||
Sbjct 446 AGACTTCGGAACGGAGGAGTAGATTTATTGAAGAAAGTCCGGAGTAGAGGCATTGATCCT 505
Query 541 AGCATTCGGTCTGAGGTGTGGCCATTTCTTCTTGGAGTGTGTGATTTCAATAGTTCCGAA 600
|||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 506 AGCATTCGTTCGGAGGTTTGGCCATTTCTTCTTGGAGTGTGTGATTTGAATAGTTCCGAA 565
Query 601 GAAGAGAGAGGTGCTACAAGAACTTGGAGAAGAAAAGTGTATGAGAGACTACGCAGGCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GAAGAGAGAGGTGCTACAAGAACTTGGAGAAGAAAAGTGTATGAGAGACTACGCAGGCAG 625
Query 661 TGCAAAAGGCTTCAAAAACAAAACAGTGGGACTTTTAAGTTAAACAAGATCAATAAAACT 720
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 626 TGCAAAAGGCTTCAAAGACAAAACAGTGCAACTCTTAAGTTAAACAAGATCAATAAAACT 685
Query 721 ACTCAAGATGATGAGCATGATAGTTGGTCTCTTGCGCAAGACTCTGAAAGTTCATGTTCT 780
||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 686 ACTCAAGATGA-G--CATGATAGTTGGTCTCTTGCACAAGACTCTGACAGTTCATGTTCT 742
Query 781 GATGATGCTTGCAGCGTCCACGAGTCTCTTA-TCAGCGATAAAGACAACACGGAAGATAT 839
| |||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 743 GGTGATGCTTGCAGCGCCCACGAGTCTCTTACT-AGCGACAAAGACAACACGGAAGATAT 801
Query 840 TGGCTACATGAGTGATGTCTCATGTACGCTTGACAGAGACTA-TAATGGTTCAAGACACC 898
|||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 802 TGGCTACATGAGTGATGTCTCATGTACGCTTGACAGAGACTACTC-TGGTTCCAGACACC 860
Query 899 TGAACTCTGAGTCGTCAGACTCAGATTCATCTGATGAGAATGATTATGTTCAGGTCGCTC 958
|||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 861 TGAATTCTGAGTCCTCAGATTCAGATTCATCTGATGAGAATGATTCTGTTCAGGTCGCTC 920
Query 959 CTTCTTGTGAAGGGAAAGATGAAAACAGTACTTCTCCATCCAGCATATATATTTCTCGTA 1018
|||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 921 CTTCTTCTGAAGGGAGGGATGAAAATAGTACTTCTCCATCCAGCATATATATTTCTCGTA 980
Query 1019 CCAAAGAGGATTTTGTGACCTGGCAGCGTATTATCCGTCTAGACGCTCTCCGTGCAGATA 1078
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 981 CCAAAGAGGATTTTGTGACCTGGCAGCGTATTATCCGTCTTGACGCTCTTCGTGCCGATA 1040
Query 1079 CAGAATGGACTCCATATTC-TCAATCCCAAGCTTTGGTTTCAGAGAATAGGGCACGTCGT 1137
|||| |||||||||||||| ||| ||||||||| |||| ||||||||||||||||| |||
Sbjct 1041 CAGAGTGGACTCCATATTCCTCA-TCCCAAGCTATGGTGTCAGAGAATAGGGCACGCCGT 1099
Query 1138 GCTGCTGAAGCAGTTGGTCTAAAGGATTACAGTTATTTGGAACCTTCGAAAATCTTTCAC 1197
|||||||| ||||||| | |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1100 GCTGCTGAGGCAGTTGTTTTAAAGGATTACAGTCATTTGGAACCTTCGAAAGTCTTTCAC 1159
Query 1198 GCTGCACGGCTTGTTGCTGTTCTTGAAGCCTATGCCTTACATGACCCTGAAATTGGCTAC 1257
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1160 GCTGCACGGCTTGTTGCTGTTCTTGAAGCCTATGCCTTATATGATCCTGAAATTGGCTAT 1219
Query 1258 TGCCAAGGAATGAGTGATCTTCTCTCCCCTATACTCTCAGTCATACCTGATGACTACGAG 1317
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1220 TGCCAAGGAATGAGTGATCTTCTCTCCCCTATACTCTCTGTCATACCTGATGACTACGAG 1279
Query 1318 GCATTTTGGTGTTTCGTTGGGTTCATGAAGAAAGCTCGTCAGAATTTCAGAGTCGATGAG 1377
|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1280 GCATTTTGGTGTTTTGTTGGGTTCATGAAGAAAGCACGTCAGAATTTCAGACTCGATGAG 1339
Query 1378 GTTGGGATCACAAGGCAACTGAACATAGTCTCAAAGATTATCAAATCCAAAGACTCACAA 1437
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1340 GTTGGGATCACAAGGCAACTCAACATAGTATCAAAGATTATCAAATCCAAAGACTCACAG 1399
Query 1438 CTCTACAAGCATCTTGAGAAAGTCAAGGCTGAAGACTGTTTCTTTGTTTACAGAATGGTT 1497
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1400 CTCTACAAGCATCTTGAGAAAGTCAAGGCGGAAGACTGTTTCTTTGTTTACAGAATGGTG 1459
Query 1498 CTTGTTATGTTTAGAAGAGAGCTGACTCTGGAGCAAACATTGCATCTCTGGGAAGTGATT 1557
||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1460 CTTGTGATGTTTAGAAGAGAGCTGACTCTGGAGCAAACACTGTATCTCTGGGAAGTGATT 1519
Query 1558 TGGGCAGACCAAGCTGCAATAAGAGCTGGGATGGGGAAATCTTCCTGGAGCAGACGAATA 1617
|||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||||
Sbjct 1520 TGGGCAGACCAAGCTGCAGTAAGAGCTGGCATGGGGAAATCTTCCTGGAGCCGTCGAATA 1579
Query 1618 AAGCAGCGGGCTCCTCCCACGGAGGATTTGTTGCTGTACGTGGTAGCTGCTTCTGTGTTG 1677
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1580 AAGCAGCGGGCTCCTCCCACAGAGGATTTGTTGCTGTACGCGGTAGCTGCTTCTGTGTTG 1639
Query 1678 CAAAGGAGGAAAGTCATAATAGAGAAGTACAGTAGCATGGAGGAGATTCTCCGAGAGTGC 1737
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1640 CAAAGGAGGAAAGTCATAATAGAGAAGTACAATAGCATGGAGGAGATTCTCCGGGAGTGC 1699
Query 1738 CACAATATGGTAGGGAAACTAGACGTGTGGAAGCTCTTAGACGATGCACACGACCTTATT 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 CACAATATGGTAGGGAAACTAGACGTGTGGAAGCTCTTAGACGATGCACACGACCTTATT 1759
Query 1798 GTTACCCTCCACGCCAAGATCGAACATTCTA-TCCCACAAT 1837
|| |||||||||||||||||||||||||| | ||||| |||
Sbjct 1760 GTCACCCTCCACGCCAAGATCGAACATTCGAATCCCATAAT 1800
Score = 313 bits (169), Expect = 4e-84
Identities = 218/241 (90%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 1959 CAAACCGAGGATTTGATTTACCGCTATCTAAATCCCGGTTTAACATATCAA-ATGGCCTG 2017
|||||| |||||||||| ||| ||||||||||||||| | |||||||| || | |||| |
Sbjct 1866 CAAACCCAGGATTTGATATACTGCTATCTAAATCCCGATGTAACATAT-AACAAGGCCAG 1924
Query 2018 AATCAAGATAGGCATGATTTGTGTGGTGTGTTGGGAAACTTTCAGAGGTGAGTTTCTCTG 2077
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1925 TATCAAGATAGGCATGATTTGTGTGGTGTGTTGTGAAACTTTCAGAGGTGAGTTTCTTTG 1984
Query 2078 CTTTCATTTTCAATTTTGTATATGGAAACAATTTTGTTTGTGCCGGGAAAGAGAATCTTT 2137
| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1985 CCTCCATTTTCAATTTTGTATATG-AAACAATTTT-TTTGTGCCGGGAAAGAGAATCTTC 2042
Query 2138 CGCCGGTAAAAGAAGAAACCAACTCTCTTTCTGTTCATTCTTATTCCAAAAGTATAAATA 2197
|| ||||||||||| ||||||||||| || ||||||||||||||||||||| ||| ||||
Sbjct 2043 CGTCGGTAAAAGAATAAACCAACTCT-TT-CTGTTCATTCTTATTCCAAAATTATTAATA 2100
Query 2198 T 2198
|
Sbjct 2101 T 2101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84179441450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5