BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24400.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489305 jgi|Araly1|489305|fgenesh2_kg.6__2439__AT5G24400.1 1598 0.0
> Ahg489305 jgi|Araly1|489305|fgenesh2_kg.6__2439__AT5G24400.1
Length=1233
Score = 1598 bits (865), Expect = 0.0
Identities = 1136/1261 (90%), Gaps = 42/1261 (3%)
Strand=Plus/Plus
Query 1 AAAGTCAAAGTTGTTCACTTT-ACCTATAAAAACGctctc--tcactttcttttcaatgg 57
||||||||||||||||||||| ||||||||||||||||| | || || ||||||||||
Sbjct 1 AAAGTCAAAGTTGTTCACTTTCCCCTATAAAAACGCTCTCTTTAAC-TT-TTTTCAATGG 58
Query 58 ------cttcttcttcttgtttccttcgctcgattctcttctcttctcCTACTAACCTTC 111
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 59 CTTCTTCTTCTTCTTCTTGTTTCCTTCGCTCGATTCTCTTCTCTTCTCCCACTAACCTCC 118
Query 112 GTTCAAATC-ACCATCTCCCCACTTTCTTCCCCAAGAATTATCTCATTTGCTCTCATTCC 170
||||||| | ||| |||| |||||||||||||||||||| |||||| |||||||| ||||
Sbjct 119 GTTCAAA-CTACCCTCTCTCCACTTTCTTCCCCAAGAATCATCTCACTTGCTCTCCTTCC 177
Query 171 ACTTCTTCTCGCTTCGAATCGCTCTCGGTTTCATCGATCGGAACTGGATCTACCAAGA-A 229
|||||| |||| ||||||||| |||||||||||||||||| ||||||||||| ||||| |
Sbjct 178 ACTTCTCCTCGTTTCGAATCGTTCTCGGTTTCATCGATCGAAACTGGATCTAGCAAGAGA 237
Query 230 ATCATCCGATACTCGGAGAAAGGTAAAGAGCATGGCTACGACAAATATAGGAAAGGAGGA 289
| |||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||
Sbjct 238 GT-ATCCGATACTCGGATAAAAGTGAAGAGCATGGCTACGACGGATATAGGAAAGGAGGA 296
Query 290 GAAGAAAAGAGTCGAGATTTATGATCTCGAAGAGAATTTAGTGATTGATTTGGCTAAATT 349
|||||||||||| |||||||| ||||| || |||||||||| ||||||||||||||||||
Sbjct 297 GAAGAAAAGAGTTGAGATTTACGATCTTGAGGAGAATTTAGCGATTGATTTGGCTAAATT 356
Query 350 CACAGC-AGATCTCTCCGATAAGTTTTGTAAAGAGAGAGGCGCTTTCACCGTCGTTGTCT 408
||| || | ||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 357 CACTGCTA-ATCTCTCCGGTAAGTTTTGTAAAGAGAGAGGTGCTTTCACTGTCGTTGTCT 415
Query 409 CCGGTGGCTCTCTCATCAAATCACTCCGGAAATTAGTAGAATCTCCTTACGTTGATTCTA 468
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||
Sbjct 416 CCGGTGGCTCTCTCATCAAATCTCTCCGGAAACTAGTAGAATCTCCTTATGTTGACTCTA 475
Query 469 TAGATTGGGCAAGGTGGCATTTTTTCTGGGTTGACGAGAGAGTTGTTCCCAAGAATCACG 528
||||||||||||| ||||||||||| ||||| |||||| | |||||||||||||||||||
Sbjct 476 TAGATTGGGCAAGATGGCATTTTTTTTGGGTCGACGAGCGGGTTGTTCCCAAGAATCACG 535
Query 529 ATGATAGCAACTATAAACTCGCTTATGATAGTTTTCTATCCAAGGTACCAATTCCGCCTG 588
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 536 ACGATAGCAACTACAAACTCGCTTATGATAGTTTTCTGTCCAAGGTTCCAATTCCGCCTG 595
Query 589 GAAATGTATATGCAATCAACGAAGCCCTCTCCGCTGAGGCTGCAGCGGATGATTACGAGA 648
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 596 GAAATGTATATGCAATCAACGAATCCCTCTCTGCTGAGGCTGCAGCGGATGATTACGAGA 655
Query 649 CCTGCCTCAAACATTTGGTCAACACCAACATTCTCCG-TGTATCTGAATCAACTGGCTTT 707
|||||||||||||||||||||| |||||||| ||||| | ||||||||||||| |||||
Sbjct 656 CCTGCCTCAAACATTTGGTCAAGACCAACATCCTCCGCT-TATCTGAATCAACCGGCTTC 714
Query 708 CCCAAATTTGATCTCATGCTTCTAGGTATGGGACCTGATGGTCATGTGGCATCATTATTC 767
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct 715 CCCAAATTTGATCTCATGCTTCTCGGTATGGGGCCTGATGGCCATGTGGCATCCTTATTC 774
Query 768 CCTGGGCATGGTCTCTGCAACGAGAGCAAGAAATGGGTAGTTTCAATCTCTGACTCTCCA 827
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 775 CCAGGACATGGTCTCTGCAACGAGAGCAAGAAATGGGTAGTTTCAATCTCCGACTCTCCA 834
Query 828 AAACCACCGTCTGAGAGAATCACCTTCACGTTCCCGGTCATCAACTCATCTGCACATGTA 887
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 AAACCGCCGTCTGAAAGAATCACCTTCACATTCCCGGTCATCAACTCATCTGCACATGTA 894
Query 888 GCTCTAGTTGTTTGCGGTTCTGGGAAAGCTGAAGCTGTGGAGGCAGCTTTAAAGAAGACT 947
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 895 GCTCTAGTCGTTTGCGGTTCTGGGAAAGCCGAAGCTGTGCAGGCAGCTTTAAAGAAGACT 954
Query 948 GGGAATGTACCACCTGCTGGTTCTGTTTCTGCTGAAGACGAGTTGGTTTGGTTCCTGGAC 1007
||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 955 GGGGATGTACCACCTGCGGGTTCCGTTTCTGCTGAAGACGAGCTGGTTTGGTTCCTGGAT 1014
Query 1008 AAACCAGCATCTTCCAAGCTCTAAAAACAGGTGGTATGCTTCCCATTCCAGTGAACTTAC 1067
|||||||| |||||||||||||||| | | ||||||||||||||||
Sbjct 1015 AAACCAGCCTCTTCCAAGCTCTAAA--C----------C-----ATTCCAGTGAACTTAC 1057
Query 1068 CAATGTGACTAGTCCGGTTTAGTTTTTGGATTTTGACTCTTTGGTTCTCTCCATTTATGT 1127
||||||||||||||| |||| ||||||||||||| |||| |||||| |||||||||||
Sbjct 1058 CAATGTGACTAGTCCAGTTTGGTTTTTGGATTTTTACTCGCCGGTTCTTTCCATTTATGT 1117
Query 1128 TGTGGGAAGAGACTGTTGTGATAAAAGCGTGTACTTTACATGGAAATAATGAA-CTAATC 1186
| ||||||||||||||||| |||||||||| |||| |||||||||||||||| | |||
Sbjct 1118 TTTGGGAAGAGACTGTTGTAATAAAAGCGT--ACTTGACATGGAAATAATGAATCAAATT 1175
Query 1187 AATGGTTTCTCTGATTTGTTTTGGTGTATTTTGGTTAAAATCTATCGGAACCAACACTCT 1246
| |||||||||| ||||||||| |||||||||||| || |||||||||||||||| |||
Sbjct 1176 A-TGGTTTCTCTAATTTGTTTT--TGTATTTTGGTTCAAGTCTATCGGAACCAACATTCT 1232
Query 1247 C 1247
|
Sbjct 1233 C 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5