BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24400.1 Length=1248 Score E Sequences producing significant alignments: (Bits) Value Ahg489305 jgi|Araly1|489305|fgenesh2_kg.6__2439__AT5G24400.1 1598 0.0 > Ahg489305 jgi|Araly1|489305|fgenesh2_kg.6__2439__AT5G24400.1 Length=1233 Score = 1598 bits (865), Expect = 0.0 Identities = 1136/1261 (90%), Gaps = 42/1261 (3%) Strand=Plus/Plus Query 1 AAAGTCAAAGTTGTTCACTTT-ACCTATAAAAACGctctc--tcactttcttttcaatgg 57 ||||||||||||||||||||| ||||||||||||||||| | || || |||||||||| Sbjct 1 AAAGTCAAAGTTGTTCACTTTCCCCTATAAAAACGCTCTCTTTAAC-TT-TTTTCAATGG 58 Query 58 ------cttcttcttcttgtttccttcgctcgattctcttctcttctcCTACTAACCTTC 111 ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 59 CTTCTTCTTCTTCTTCTTGTTTCCTTCGCTCGATTCTCTTCTCTTCTCCCACTAACCTCC 118 Query 112 GTTCAAATC-ACCATCTCCCCACTTTCTTCCCCAAGAATTATCTCATTTGCTCTCATTCC 170 ||||||| | ||| |||| |||||||||||||||||||| |||||| |||||||| |||| Sbjct 119 GTTCAAA-CTACCCTCTCTCCACTTTCTTCCCCAAGAATCATCTCACTTGCTCTCCTTCC 177 Query 171 ACTTCTTCTCGCTTCGAATCGCTCTCGGTTTCATCGATCGGAACTGGATCTACCAAGA-A 229 |||||| |||| ||||||||| |||||||||||||||||| ||||||||||| ||||| | Sbjct 178 ACTTCTCCTCGTTTCGAATCGTTCTCGGTTTCATCGATCGAAACTGGATCTAGCAAGAGA 237 Query 230 ATCATCCGATACTCGGAGAAAGGTAAAGAGCATGGCTACGACAAATATAGGAAAGGAGGA 289 | |||||||||||||| ||| || ||||||||||||||||| |||||||||||||||| Sbjct 238 GT-ATCCGATACTCGGATAAAAGTGAAGAGCATGGCTACGACGGATATAGGAAAGGAGGA 296 Query 290 GAAGAAAAGAGTCGAGATTTATGATCTCGAAGAGAATTTAGTGATTGATTTGGCTAAATT 349 |||||||||||| |||||||| ||||| || |||||||||| |||||||||||||||||| Sbjct 297 GAAGAAAAGAGTTGAGATTTACGATCTTGAGGAGAATTTAGCGATTGATTTGGCTAAATT 356 Query 350 CACAGC-AGATCTCTCCGATAAGTTTTGTAAAGAGAGAGGCGCTTTCACCGTCGTTGTCT 408 ||| || | ||||||||| ||||||||||||||||||||| |||||||| |||||||||| Sbjct 357 CACTGCTA-ATCTCTCCGGTAAGTTTTGTAAAGAGAGAGGTGCTTTCACTGTCGTTGTCT 415 Query 409 CCGGTGGCTCTCTCATCAAATCACTCCGGAAATTAGTAGAATCTCCTTACGTTGATTCTA 468 |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||| Sbjct 416 CCGGTGGCTCTCTCATCAAATCTCTCCGGAAACTAGTAGAATCTCCTTATGTTGACTCTA 475 Query 469 TAGATTGGGCAAGGTGGCATTTTTTCTGGGTTGACGAGAGAGTTGTTCCCAAGAATCACG 528 ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||||||||||| Sbjct 476 TAGATTGGGCAAGATGGCATTTTTTTTGGGTCGACGAGCGGGTTGTTCCCAAGAATCACG 535 Query 529 ATGATAGCAACTATAAACTCGCTTATGATAGTTTTCTATCCAAGGTACCAATTCCGCCTG 588 | ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 536 ACGATAGCAACTACAAACTCGCTTATGATAGTTTTCTGTCCAAGGTTCCAATTCCGCCTG 595 Query 589 GAAATGTATATGCAATCAACGAAGCCCTCTCCGCTGAGGCTGCAGCGGATGATTACGAGA 648 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 596 GAAATGTATATGCAATCAACGAATCCCTCTCTGCTGAGGCTGCAGCGGATGATTACGAGA 655 Query 649 CCTGCCTCAAACATTTGGTCAACACCAACATTCTCCG-TGTATCTGAATCAACTGGCTTT 707 |||||||||||||||||||||| |||||||| ||||| | ||||||||||||| ||||| Sbjct 656 CCTGCCTCAAACATTTGGTCAAGACCAACATCCTCCGCT-TATCTGAATCAACCGGCTTC 714 Query 708 CCCAAATTTGATCTCATGCTTCTAGGTATGGGACCTGATGGTCATGTGGCATCATTATTC 767 ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||| Sbjct 715 CCCAAATTTGATCTCATGCTTCTCGGTATGGGGCCTGATGGCCATGTGGCATCCTTATTC 774 Query 768 CCTGGGCATGGTCTCTGCAACGAGAGCAAGAAATGGGTAGTTTCAATCTCTGACTCTCCA 827 || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 775 CCAGGACATGGTCTCTGCAACGAGAGCAAGAAATGGGTAGTTTCAATCTCCGACTCTCCA 834 Query 828 AAACCACCGTCTGAGAGAATCACCTTCACGTTCCCGGTCATCAACTCATCTGCACATGTA 887 ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 835 AAACCGCCGTCTGAAAGAATCACCTTCACATTCCCGGTCATCAACTCATCTGCACATGTA 894 Query 888 GCTCTAGTTGTTTGCGGTTCTGGGAAAGCTGAAGCTGTGGAGGCAGCTTTAAAGAAGACT 947 |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 895 GCTCTAGTCGTTTGCGGTTCTGGGAAAGCCGAAGCTGTGCAGGCAGCTTTAAAGAAGACT 954 Query 948 GGGAATGTACCACCTGCTGGTTCTGTTTCTGCTGAAGACGAGTTGGTTTGGTTCCTGGAC 1007 ||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| Sbjct 955 GGGGATGTACCACCTGCGGGTTCCGTTTCTGCTGAAGACGAGCTGGTTTGGTTCCTGGAT 1014 Query 1008 AAACCAGCATCTTCCAAGCTCTAAAAACAGGTGGTATGCTTCCCATTCCAGTGAACTTAC 1067 |||||||| |||||||||||||||| | | |||||||||||||||| Sbjct 1015 AAACCAGCCTCTTCCAAGCTCTAAA--C----------C-----ATTCCAGTGAACTTAC 1057 Query 1068 CAATGTGACTAGTCCGGTTTAGTTTTTGGATTTTGACTCTTTGGTTCTCTCCATTTATGT 1127 ||||||||||||||| |||| ||||||||||||| |||| |||||| ||||||||||| Sbjct 1058 CAATGTGACTAGTCCAGTTTGGTTTTTGGATTTTTACTCGCCGGTTCTTTCCATTTATGT 1117 Query 1128 TGTGGGAAGAGACTGTTGTGATAAAAGCGTGTACTTTACATGGAAATAATGAA-CTAATC 1186 | ||||||||||||||||| |||||||||| |||| |||||||||||||||| | ||| Sbjct 1118 TTTGGGAAGAGACTGTTGTAATAAAAGCGT--ACTTGACATGGAAATAATGAATCAAATT 1175 Query 1187 AATGGTTTCTCTGATTTGTTTTGGTGTATTTTGGTTAAAATCTATCGGAACCAACACTCT 1246 | |||||||||| ||||||||| |||||||||||| || |||||||||||||||| ||| Sbjct 1176 A-TGGTTTCTCTAATTTGTTTT--TGTATTTTGGTTCAAGTCTATCGGAACCAACATTCT 1232 Query 1247 C 1247 | Sbjct 1233 C 1233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46624327491 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5