BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24410.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326734 jgi|Araly1|326734|fgenesh1_pm.C_scaffold_6001954 1059 0.0
> Ahg326734 jgi|Araly1|326734|fgenesh1_pm.C_scaffold_6001954
Length=786
Score = 1059 bits (573), Expect = 0.0
Identities = 716/787 (91%), Gaps = 2/787 (0%)
Strand=Plus/Plus
Query 83 ATGGCATCTGTTTTGGAGAAAACGAAGAGTAAGAAGATTGTGTTTCCCACAAAGAAAGAA 142
|||||||| ||||||| |||||||||||| ||||||||| | |||||||||||||| |||
Sbjct 1 ATGGCATCAGTTTTGGCGAAAACGAAGAGGAAGAAGATTATATTTCCCACAAAGAATGAA 60
Query 143 TTATCGGAGGCTATGGCC-ACGTACACGGCCAATCTCTCAGCCAAGTTTTGCAAGGAGAG 201
|| ||||||||||||||| | |||||||||||||||||| |||||||| ||||||| |||
Sbjct 61 TTGTCGGAGGCTATGGCCGA-GTACACGGCCAATCTCTCCGCCAAGTTCTGCAAGGTGAG 119
Query 202 AGGCTATTTCACCGTCGTTCTTTCCGGTGGCGACCTCATCTCCTGGCTCAGTGAATTGTT 261
||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 120 AGGTTACTTCACCGTAGTTCTTTCCGGTGGCGACCTCATCTCTTGGCTCAGTGAATTGGT 179
Query 262 GGAACCAAAGTATCAAGAAAGTATCGAATGGTCAAAGTGGCACATTTTTTGGGTCGATGA 321
|||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||| ||
Sbjct 180 GGAACCAATGTATCAAGAAAGCATCGAATGGTCAAAGTGGCACGTCTTTTGGGTCGACGA 239
Query 322 GAGGGTTGTTCCATTAGACCATGAGGACAGCAACTACAAACTCGCCTTTGATGGTTTTCT 381
||| ||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 240 GAGAGTTGTTCCATTGGACCATAAGGACAGCAATTACAAACTCGCTTTTGATGGTTTTCT 299
Query 382 CTCCAAGGTTCCAATACCAATTGCAAACATATATCCAATCGACAAAGACTGTGCAGCCCT 441
|||||||||||| || ||| |||| |||||| || |||||||||||||||||||||||||
Sbjct 300 CTCCAAGGTTCCGATTCCAGTTGCGAACATACATGCAATCGACAAAGACTGTGCAGCCCT 359
Query 442 TGGTGATGCCAAAAGTGCAGCATTACTCTACGAAGAATGTCTCAAAAGACTGGTGAACCG 501
||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TGGTGATGCCAAAGGTGCCGCATTACTCTACGAAGAATGCCTCAAAAGACTGGTGAACCG 419
Query 502 AAACATCATTCGCACATACAAATCGTCTGGCTTCCCACAGTTCGACCTCCAGCTCTTAGG 561
| ||||||| |||||||||||| | || |||||||| || ||||| ||||| ||| ||||
Sbjct 420 AGACATCATCCGCACATACAAAGCCTCGGGCTTCCCTCAATTCGATCTCCAACTCCTAGG 479
Query 562 AATGGGTCCAGACGGTCACATGGCGTCTTTGTTCCCGGGACATTATCAAATCAAGGAGAA 621
||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 480 GATGGGTCCAGATGGTCATATGGCATCTTTGTTCCCGGGACATTATCAGATCAAGGAGAA 539
Query 622 GGCAAATTTGGTAACCTATATCACTGATTCCCCAAAACCGCCTCCGAAGAGAATCACCTT 681
|||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 540 GGCAGATTTGGTAACTTATATCACTGATTCCCCAAAACCGCCACCAAAGAGAATCACCTT 599
Query 682 TACTTTACCGGTTATTAACTGCGCTTCATACAACCTCATGGCTGTATGTGATGAGGCTCA 741
|| |||||||| |||||||| ||||| || ||||||||||| |||||||||||||||||
Sbjct 600 CACATTACCGGTCATTAACTGTGCTTCCTATAACCTCATGGCCGTATGTGATGAGGCTCA 659
Query 742 AGCCGATGCGGTAGCTAAGGTTTTCAACCATAACTTCGACTTGCCTGCTGCTTGGCTCAC 801
||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 660 AGCTGATGCGGTAGCTAAGGTTTTCAGCGATAACTTCGACTTGCCTGCTGCTTGGCTCAC 719
Query 802 AGCTGACGTAGAAGCTATCTGGTTTCTTGACCAAGCCGCTGCATCTAAGATCCCAAAAGG 861
||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 720 AGCTGACAAAGAAGCCATCTGGTTTCTTGACCAAGCCGCTGCATCAAAGATCCCGAAAGG 779
Query 862 ACTTTGA 868
|| ||||
Sbjct 780 ACATTGA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5