BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24420.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941993 jgi|Araly1|941993|scaffold_602537.1 1273 0.0
> Ahg941993 jgi|Araly1|941993|scaffold_602537.1
Length=801
Score = 1273 bits (689), Expect = 0.0
Identities = 770/808 (95%), Gaps = 10/808 (1%)
Strand=Plus/Plus
Query 110 TTTCTCTCTG-ATAGGCAACAATGGCGCAGAGGAAGATGATTGTGTTTCCCACCAAGAAT 168
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCTCTC-GTATAGGCAACAATGGCGCAGAGGAAGATGATTGTGTTTCCCACCAAGAAT 59
Query 169 GAATTGTC-CGAAGCAATGGCTGAGTACACTGCCAATCTCTCCGCCAAGTTCATCAAAGA 227
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 60 GAATTGTCTCG-AGCAATGGCTGAGTACACTGCCAATCTCTCCGCTAAGTTCATCAAGGA 118
Query 228 GAAAGGCCTTTTCACCGTTGTTCTCTCCGGCGGTGACCTAATCGATTGGCTCTGCAAGTT 287
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 119 GAAAGGTCTTTTCACCGTTGTTCTCTCCGGCGGTGACCTCATTGATTGGCTCTGCAAGTT 178
Query 288 GGTGCAACCTCCTTATATTGATTCAATCGAATGGCCAAAATGGCACGTCTTTTGGGTCGA 347
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 179 GGTGCAACCTCCTTATATTGATTCAATCGAATGGTCAAAGTGGCACGTCTTTTGGGTCGA 238
Query 348 TGAGAGGGTTTGTGCATGGGAAGATCCAGACAGTAACTACAAACTCGCCATGGAGGGTTT 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGAGAGGGTTTGTGCATGGGAAGATCCAGACAGTAACTACAAACTCGCCATGGAGGGTTT 298
Query 408 TCTCTCTAAGGTTCCGATTCCGGATAAGAACATCTACGCAATCGACAAGCACTTGGCGGC 467
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 299 TCTCTCTAAGGTTCCGATTCCGGATAAGAACATCTACGCGATCGACAAGCACTGGGCGGC 358
Query 468 TGATGGTAACGCCGAGCACTGCGCGACGCTCTACGAGGAGTGTCT-AAAGAATCTGGTGA 526
| |||||||||| |||||||||||| | ||||||||||| ||||| ||| ||||||||||
Sbjct 359 TAATGGTAACGCTGAGCACTGCGCGGCACTCTACGAGGAATGTCTTAAA-AATCTGGTGA 417
Query 527 AAGAAAAGATTATCCCAATATCGAAAAAGACAGGGTATCCTGAGTTTGATCTACAACTTC 586
| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 418 AGGAAAAGATAATCCCAATATCGAAAAAGACAGGATATCCTGAGTTCGATCTACAGCTTC 477
Query 587 TAGGGATGGGTCCTGATGGCCACATGGCGTCTCTCTTCCCAAACCATCCACAGATCAATG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TAGGGATGGGTCCTGATGGCCACATGGCGTCTCTCTTCCCAAACCATCCACAGATCAATG 537
Query 647 AGAAGCAGAAATGGGTCACTTACATCACCGACTCTCCAAAACCACCACCAAAGAGAATCA 706
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGAAGCAGAAATGGGTCACTCACATCACCGACTCTCCAAAACCACCACCAAAGAGAATCA 597
Query 707 CATTCACTTTACCGGTCATCAACTCTACTTTGTACAATCTTATGGCCATTTGTGACAAAG 766
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 CATTCACTTTACCGGTCATCAACTCTGCTTTGTACAATCTTATGGCCATTTGTGACAAAG 657
Query 767 CACCGGCCAAATCCGTGGCTGAGATCATGAAGCACAACAACCTCTCGTTACCTTCTGCTC 826
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 658 CACCCGCAAAATCCGTGGCTGAGATCATGAAGCACAACAACCTTTCGTTACCTTCTGCTC 717
Query 827 ATCTTAGTGCTCAAGTCGAAAATGTTTGGTACCTTGACCAAGCAGCTGCCTCCGAGCTCT 886
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 718 ATCTTAGTGCCCAAGTCGAAAATGTTTGGTACCTAGACCAAGCAGCTGCTTCCGAGCTCT 777
Query 887 AGAGAGGTAGCCTAAACACATTAATATT 914
|||||| ||||||||||||||||||
Sbjct 778 AGAGAG----CCTAAACACATTAATATT 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5