BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24440.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326737 jgi|Araly1|326737|fgenesh1_pm.C_scaffold_6001957 1327 0.0
> Ahg326737 jgi|Araly1|326737|fgenesh1_pm.C_scaffold_6001957
Length=942
Score = 1327 bits (718), Expect = 0.0
Identities = 887/965 (92%), Gaps = 25/965 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGTCGCGGAAAATGTTGGTGTGAAGGTGGACTCTTCTAATAATCAGAATATAGAC 60
||||||||||| ||||||||||||||||||||||| |||||| || |||| ||| |||||
Sbjct 1 ATGGCTGTCGCAGAAAATGTTGGTGTGAAGGTGGATTCTTCTGATGATCAAAATTTAGAC 60
Query 61 AACAACACTACTTCATTAGTAGAGACAAAACCATCATGTTCTGATGATCAGACACCTAAA 120
||||| ||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||
Sbjct 61 AACAATACTACTTCATTAGCAGAGACAAAACCGTCATGTCCTGATGACCAGACACCTAAA 120
Query 121 TCCAAATCCTCTGTTCTAACAAACGAATTGATCCAAAGAACCAGTGAAGTGAATCTCAAG 180
||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
Sbjct 121 TCCAATTCCTCTGTTCTCACAAACGAATTGATCCAAAGAACCAGTGAAGTGGATCTCATG 180
Query 181 AGTGAGATAAGTCATTTGAATCCGATGGCTAAGGAATTTGTCCCTTCTTTTCTGGCTCAA 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGTGAGATAAGTCGTTTGAATCCGATGGCTAAGGAATTTGTCCCTTCTTTTCTTGCTCAA 240
Query 241 ACCCACCACTCTGAGTTTTGGGGAAATAGATTCTGGTTTACTAACCATTTTCCAAAGCAA 300
| | |||||||||||||| | ||| |||||| ||||| |||||| ||||||| ||
Sbjct 241 A--C-CCACTCTGAGTTTTTGAGAAGTAGATTATGGTTCACTAACAATTTTCC--AG--- 292
Query 301 ACTATTTTTCTTATTGGCCAGTTTGCTACAATGAGAAGGAACTTTGGCAAAGGGAGGCCA 360
| | | || | ||| ||||||||||||||| ||||||| ||||||||| |
Sbjct 293 -------TGC--A--AGCTA-TTT-CTACAATGAGAAGGAGCTTTGGCCAAGGGAGGCGA 339
Query 361 TGGA-TAACCaaaaaaaCAAACTTGGTTCAGAATGAAGATATGATCAAGAGAACTGTATA 419
|||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 340 TGGATTAA-CAAAAAAACAAACTTGGTTCAGAATGAAGATGTAATCAAGAGAACTGTATA 398
Query 420 TGTCTCAGACATCGAT-AACCAAGTTACTGAGGAGCAGCTTGCAAGTCTCTTTCTTTCTT 478
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 399 TGTCTCAGACATCGATCAA-CAAGTTACTGAGGAGCAACTTGCAAGTCTCTTTCTTTCTT 457
Query 479 GTGGCCAGGTTGTTGATTGCCGTATGTGCGGTGACTATAAGTCCATTCTTCGTTTCGCCT 538
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 458 GTGGCCAGGTTGTTGATTGCCGTATATGCGGTGACCATAAGTCCATTCTTCGTTTCGCCT 517
Query 539 TCATTGAGTTCACCGATGCAGAGGGAGCTAGGTCTGCTTTACGAAAATCCGGTACTATGT 598
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 518 TCATTGAGTTCACCGATGCAGAGGGAGCTAGGTCTGCCTTACGAAAATCGGGTACTGTGT 577
Query 599 TTGGTTCTCATCCTATTAGGGTTTTTATGTCCAAAACAGCTATTGCGCCTGTTAACCCGT 658
||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 578 TTGGTTCTCATCCTATTAGGGTTCATATTTCCAAAACAGCTATTGCACCTGTTAACCCGT 637
Query 659 CTTTCCTTCCACAATCCAAGGACGAGCTAGAGAAGTGTGGAAAGACTGTTTATTGTACCA 718
| |||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 638 CGTTCCTTCCACGGTCCGAGGAAGAGCTAGAGAAGTGTGGAAAGACAGTTTATTGTACCA 697
Query 719 ACATTGACAAGGAGGTCACTAAGATGGAGTTGGAAAATTTCTTTAAAACAGTTTGTGGGG 778
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 698 ACATTGACAAGCAGGTCACTAAGATGGAGTTGGAAAATTTCTTTAAAACTGTTTGTGGGG 757
Query 779 AGGTTCACCATCTGAGGTTGCTTGGAGACTTTTACCACCAAACCCGCATTGCTTTTGTCG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AGGTTCACCATCTGAGGTTGCTTGGAGACTTTTACCACCAAACCCGCATTGCTTTTGTCG 817
Query 839 AATTTAAGCTGGCAGAAAGTGCAATTTCTGCTCTTAATTGCAGTGGTGTTGTCTTGGGAG 898
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 818 AATTTAAGCTGGCAGAAAGTGCAATTTCTGCTCTTAATTACAGTGGTGTTGTCTTGGGAG 877
Query 899 AGCTCCCAATAAGGGTAAGCCCGTCAAAGACGCCAGTGAGGCTACACCACTCTGATTTAA 958
|||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 878 AGCTCCCAATAAGGATAAGCCCATCAAAGACGCCAGTGAGGCCACACCACTCTGATTTAA 937
Query 959 ACTAA 963
|||||
Sbjct 938 ACTAA 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5