BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24450.1
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326738 jgi|Araly1|326738|fgenesh1_pm.C_scaffold_6001958 2446 0.0
Ahg485301 jgi|Araly1|485301|fgenesh2_kg.5__1293__AT3G49410.1 1230 0.0
> Ahg326738 jgi|Araly1|326738|fgenesh1_pm.C_scaffold_6001958
Length=1668
Score = 2446 bits (1324), Expect = 0.0
Identities = 1545/1647 (94%), Gaps = 34/1647 (2%)
Strand=Plus/Plus
Query 166 ATGGGAATCATTGAAAACGGAACTATCTCGGGTAACTTGCCTAGCAAGGAGGCGTTTGTG 225
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGAATCATTGAAAACGGAACAATATCGGGTAACTTGCCGAGCAAGGAGGCGTTTGTG 60
Query 226 GTTCACTATCCTGGCTATCCATCATCTATTTCCCGAGCCGTGGAGACTCTCGGGGGAATC 285
||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||
Sbjct 61 GTTCACTATCCTGGCTACCCATCATCTATTTCCCGAGCTTTGGAGACTCTTGGGGGAATC 120
Query 286 CAAGGAATCACAACCGCAAGAGAATCAACGTCAAACAAGCTTGAGCTGCATTTCCGCCCT 345
||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 121 CAAGGGATCACAACCGCAAGAGAATTAATGTCAAACAAGCTTGAGCTTCATTTCCGCCCT 180
Query 346 GAAGACCCTTCTGCACATCCTGCCTAT-GGAGAACGACGTCATTGTAATGGTTTTCTGTT 404
|||||||||| ||||||||||| || | ||||||| ||||| |||| |||||||||||||
Sbjct 181 GAAGACCCTTATGCACATCCTGTCT-TGGGAGAACAACGTCCTTGTCATGGTTTTCTGTT 239
Query 405 AAAAATTTCGAAGGAGGAT-GTTAAGAAAGATTCTCTGCCTGAAAGTCAACCTGTTATTT 463
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AAAAATTTCGAAGGAGG-TCGTTAAGAAAGATTCTCTGCCTGAAAGTCAACCTGTTCTTG 298
Query 464 CCACTAGCGATGCATGCTTACCAGAAG-TGCGCCCAGCTCTATGTGCTGATATTGTAGCT 522
|||||||| |||||||||||||||||| | |||||| || ||||||||||||||||||
Sbjct 299 CCACTAGCAATGCATGCTTACCAGAAGAT-TTCCCAGCCCTGTGTGCTGATATTGTAGCT 357
Query 523 CGTGTGTCTGAATCGTATTGCTTTGATGGCATGGTCGACTACCAGCATGTAATTCCTATT 582
|||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 358 CGTGTGTCTGAATCGTATTGTTTTGATGGCATGGCCGACTACCAGCATGTAGTTCCTATT 417
Query 583 CACGCTGATATTGCACAGCAGAAGAAGAGAAAATGGATGGAGGTGAAGTCGCTTGCAGGA 642
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 CACGCTGATATTGCACAGCAGAAGAAGAGAAAATGGATGGAGGTGAAGTCACTTGCAGGA 477
Query 643 AAAAATGATCTAATGGACATGGCTGATGAAGATGTAATGATGTTATTGCCACAGTTCTTT 702
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAAAACGATCTAATGAACATGGCTGATGAAGATGTAATGATGTTATTGCCACAGTTCTTT 537
Query 703 TCACCCAAAGATAGGCCAGACAACCTGGTGCTGAGACTTCCAGTAACATCAAGCCCAAAA 762
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 TCACCCAAAGATATGCCAGACAACTTGGTGCTGAGACTTCCAGTAACATCAAGCCCAAAA 597
Query 763 AAGAAAGATGAGGAACTAACTCAGAATCTTTATGAGATAGATATTGGCCCAGTATTTGCA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAGAAAGATGAGGAACTAACTCAGAATCTTTATGAGATAGATATTGGCCCAGTATTTGCA 657
Query 823 ATTGATTTTAGTGTCAAAGAGATCCCAAAGATATTAAAATGGGAAGACTATATCGTTCCC 882
||||| | | || || ||||| |||||||||||||||||||||| ||| ||||||
Sbjct 658 ATTGA---T--T-TC--AG-TATCCCGAAGATATTAAAATGGGAAGACTTTATTGTTCCC 708
Query 883 ACCTCCAACCAATGGAAATGGCAGGTAGCAGTGTCTGCATTGTTTGAAGAGCGACCTGTG 942
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGCTCCAACCAATGGAAATGGCAGGTAGCAGTGTCTGCATTGTTTGAAGAGCGACCTGTG 768
Query 943 TGGACAAGAGATTCCATAGTCCAACGACTACTCGATAAAGGTCTTACATGCACACATCAT 1002
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 769 TGGACAAGAGATTCCATAGTCCAACGACTACTTGATAAAGGTCTTAAATGCACACATCAT 828
Query 1003 ATGTTAAACAGGTTTCTTCTTAGGGCTGCATATTATTTCTCGGGTGGTCCATTTCTTAGG 1062
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 829 ATGCTAAACAGGTTTCTTCTTAGGGCTGCATATTATTTTTCGGGTGGTCCATTTCTTAGG 888
Query 1063 TTCTGGATTAAAAGAGGCTATGATCCACGGAAAGATCCTGAATCTCGTGTATTCCAGAGA 1122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 889 TTCTGGATTAAAAGAGGCTATGATCCACGGAAAGATCCTGAATCTCGCGTATTCCAGAGA 948
Query 1123 ATGGAATTCAGGGTTCCACCTGAATTAAAGGGTTATTGTGATTCCAATGCAACTAACAAG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ATGGAATTCAGGGTTCCACCTGAATTAAAGGGTTATTGTGATTCCAATGCAACTAACAAG 1008
Query 1183 TCAAAGCCAAGCTGGGATGACATTTGTGCGTTTAAAGTATTTCCTTTCAAATGCCAAACA 1242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1009 TCAAAGCCAAGCTGGGATGACATTTGTGCGTTTAAAGTATTTCCTTTCAAGTGCCAAACA 1068
Query 1243 TTTCTACAGTTATTTGAACTTGACGATGAGTACATTCAACAAGAGATAAGAAAGCCTCCC 1302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TTTCTACAGTTATTCGAACTTGACGATGAGTACATTCAACAAGAGATAAGAAAGCCTCCC 1128
Query 1303 AAGCAGACTACTTGTAATTATAAAACAGGATGGTTCTCTGAAGCGCTGCTTGACAATTTG 1362
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1129 AAGCAGACTACTTGTAATTATAAAACAGGATGGTTTTCTGAAGCGCTGCTTGACAATTTG 1188
Query 1363 AGACTCCGTGTAGCTGTGAGGTTTGTATCTGTGTTTCCTGAGCCAGGTTTCGAAGACGTT 1422
||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 1189 AGACTTCGTGTAGCTGTGAGGTATGTATCTGTGTTTCCGGAGCCAGGTTTTGAAGACGTT 1248
Query 1423 TTTAAATCTATTCAAGAAGAGTTTGAGAGGTCTGAAAAGACACGTATTCAGAAAGATGCA 1482
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1249 TTTAAATCTATTCAAGAAGAGTTTGAGAGGTCAGAAAAGACACGAATTCAGAAAGATGCA 1308
Query 1483 CTGCAACCA-AGTCAACGGAATCACCAGGAAACAACTAAAGATATGAAAAAGTGTAAAAA 1541
||| ||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1309 CTGAAACCATA-TCAACGGAATCACCAGGAAACATCTAAAGATATGAAGAAGTGTAAAAA 1367
Query 1542 CACAAACAAGGAGAAAGAT-GATGATGTTAATGCGGATGAGGATTCTGAAGACTTGGATG 1600
||||||||| ||||||||| | |||||||||||||||||| ||| |||||||| | ||||
Sbjct 1368 CACAAACAAAGAGAAAGATAG-TGATGTTAATGCGGATGACGATACTGAAGACGTAGATG 1426
Query 1601 ATGAATACGAGGA-------G-G-CTGCAAATGATGATGACATATCAATAAGTTCTCATG 1651
||||| ||||||| | | |||||||||||||||| ||||| || |||||||| |
Sbjct 1427 ATGAAGACGAGGAACTCAATGTGGCTGCAAATGATGATGAGATATCGATTAGTTCTCACG 1486
Query 1652 GATATGGTGACATGGAGAACAACTCCAGAACCTATCTGCAAGGTTTGTTCAATAGGTTTC 1711
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1487 AATATGGTGACATGGAGAACAACTCCAGAACCTATCTACAAGGTTTGTTCAATAGTTTTC 1546
Query 1712 CAAGCAGCGCATCAGCTTTGTATGGTAGTGCCAATGATGATAATGATAGCGATGGAGAGT 1771
||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 1547 CAAGCAGCGCACCAGCTTTGTATGGTAATGCCAATGATG-----G-TAGCGATGGAGAGT 1600
Query 1772 ATCCGATTTACGAGCAAGAATCCAACG 1798
|||||||||||||||||||||||||||
Sbjct 1601 ATCCGATTTACGAGCAAGAATCCAACG 1627
> Ahg485301 jgi|Araly1|485301|fgenesh2_kg.5__1293__AT3G49410.1
Length=1882
Score = 1230 bits (666), Expect = 0.0
Identities = 1147/1370 (84%), Gaps = 70/1370 (5%)
Strand=Plus/Plus
Query 150 AAC-TTGGAAAGAAACAATGGGAATCATTGAA-AACGGAACTATCTCGGGTAACTTGCCT 207
||| |||| ||||||||||||||||||| ||| || ||||| ||||| |||| ||||||
Sbjct 67 AACTTTGGGAAGAAACAATGGGAATCATAGAAGAA-GGAACAATCTCAGGTACCTTGCCA 125
Query 208 AGCAAGGAGGCGTTTGTGGTTCACTAT-CCTGGCTATCCATCATCTATTTCCCGAGCCGT 266
||||||||||||||||| || |||| | ||||| || ||||| ||||||||||||||| |
Sbjct 126 AGCAAGGAGGCGTTTGTAGTACACT-TCCCTGGTTACCCATCTTCTATTTCCCGAGCCAT 184
Query 267 GGAGACTCTCGGGGGAATCCAAGGAA--TCACAACCGCAAGAGAATCAACGTCAAACAAG 324
|| || || || || |||||||||| |||||| ||||| ||||||| ||||| |||
Sbjct 185 TGAAACACTTGGAGGTATCCAAGGAATTTCACAA--GCAAGGGAATCAATTTCAAATAAG 242
Query 325 CTTGAGCTGCATTTCCGCCCTGAAGACCCTTCTGCACATCCTGCCTAT-GGAGAACGACG 383
|||||||||| |||||| |||||||| |||| |||||||||||| | | || |||| |||
Sbjct 243 CTTGAGCTGCGTTTCCGGCCTGAAGATCCTTATGCACATCCTGCAT-TGGGTGAACAACG 301
Query 384 TCATTG-TAATGGTTTTCTGTTAAAAATTTCGAAGGAGGATGTTAAGAAAGATTCTCTGC 442
|| ||| | ||||||| |||||| |||||| ||| ||||| | ||| || | |
Sbjct 302 TCCTTGCT-GTGGTTTTTTGTTAAGAATTTCTAAGCAGGATATCAAG-AA-A-------C 351
Query 443 CTGAAAGTCAACCTGTTATTTCCAC---TAGCGATGCATGCTTACCA-GAAG-TGCGCCC 497
|||||||||| |||||| || |||| ||| |||| ||| ||| | |||| | | |
Sbjct 352 CTGAAAGTCAGCCTGTTCTTGCCACTAGTAGTGATGTATGTTTA-GAGGAAGCT-AGTAC 409
Query 498 AGCTCTATGTGCTGATATTGTAGCTCGTGTGTCTGAATCGTATT-GCTTTGATGGCATGG 556
|| ||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 410 AGTTCTATGTGCAGATATCATAGCTCGTGTGTCTGAATCGT-TTCACTTTGATGGCATGG 468
Query 557 TC-GACTACCAGCATGTAATTCCTATTCACGCTGATATTGCACAGCAGAAGAAGAGAAAA 615
| || || |||||||| ||||| |||||||| || ||||| |||||||| ||||||||
Sbjct 469 -CTGATTATCAGCATGTTATTCCAATTCACGCGGACATTGCGCAGCAGAAAAAGAGAAAG 527
Query 616 TGGATGGA-GGTGAAGTCGCTTGCAGGAAAAAATGATCTAATGGACATGGCTGATGAAGA 674
|||||||| | || | || ||| ||||||| | |||| | |||| | |||||||||||||
Sbjct 528 TGGATGGATGTTG-ATTCCCTTACAGGAAACAGTGATTTGATGGGCCTGGCTGATGAAGA 586
Query 675 TGTAATGATGTTATTGCCACAGTTCTTTTCACCCAAAGATAGGCCAGACAACCTGGTGCT 734
||| |||||||||||||||||||||||| |||||||||||| |||||||| ||| | |
Sbjct 587 TGTGATGATGTTATTGCCACAGTTCTTTGCACCCAAAGATATACCAGACAATGTGGCGTT 646
Query 735 GAGACTTCCAGTAACATCAAGCCCAAAAAAGAAAGATGA-G-GAACTAACTCAGAATC-T 791
|| || ||| | |||||| | || |||||||||||||| | | | ||||||||| | |
Sbjct 647 GAAACCTCCGGCAACATCTGGTCCTAAAAAGAAAGATGATGCG-GC-AACTCAGAA-CTT 703
Query 792 TTATGAGATAGATATTGGCCCAGTATTTGCAATTGATTTTAGTGTCAAAGAGATCCCAAA 851
||||||||| ||| |||||||||||||||||||||| | | || || ||||||||
Sbjct 704 TTATGAGATTGATGTTGGCCCAGTATTTGCAATTGA---T--T-TC--AG-TATCCCAAA 754
Query 852 GATATTAAAATGGGAAGACTATATCG-TTC-C-CACCTCCAACCAATGGAAATGGCAGGT 908
|| | | || |||||||||| | | | ||| | || ||||||||| ||| ||||||||||
Sbjct 755 GAAACTGAAGTGGGAAGACT-T-T-GTTTCTCGCAGCTCCAACCACTGGCAATGGCAGGT 811
Query 909 AGCAGTGTCTGCATTGTTTGAAGAGCGACCTGTGTGGACAAGAGATTCCATAGTCCAACG 968
| ||||||||||||||||||| ||||| ||| | |||||||| ||||| |||| |||||
Sbjct 812 ATCAGTGTCTGCATTGTTTGAGGAGCGGCCTATATGGACAAGGGATTCTGTAGTTCAACG 871
Query 969 ACTACTCGATAAAGGTCTTACATGCACACATCATATGTTAAACAGGTTTCTTCTTAGGGC 1028
|||||| ||||||||||||| ||| |||||||||||||||||||||||||| || |||||
Sbjct 872 ACTACTTGATAAAGGTCTTAAATGTACACATCATATGTTAAACAGGTTTCTGCTCAGGGC 931
Query 1029 TGCATATTATTTCTCGGGTGGTCCATTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCC 1088
||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 932 TGCGTATTATTTCTCCAGTGGTCCGTTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCC 991
Query 1089 ACGGAAAGATCCTGAATCTCGTGTAT-TCCAGAGAATGGAATTCAGGGTTCCACCTGAAT 1147
|||||| ||||||| |||||||||| || |||||||||||||||||||||| |||||||
Sbjct 992 ACGGAATGATCCTGCGTCTCGTGTATATC-AGAGAATGGAATTCAGGGTTCCTCCTGAAT 1050
Query 1148 TAAAGG-GTTATTGTGATTCCAATGCAACTAACAAG-TCAAAGCCAAGCTGGGATGACAT 1205
|| || ||||||||||| ||||||||||||||| | ||||||||||||||| | |||||
Sbjct 1051 TAC-GGAGTTATTGTGATGCCAATGCAACTAACA-GCTCAAAGCCAAGCTGGAACGACAT 1108
Query 1206 TTGTGCGTTTAAAGT-ATTTCCTTTCAAATGCCAAACATTTCTACAGTTATTTGAACTTG 1264
|||||| ||||| || ||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1109 TTGTGCTTTTAA-GTTATTTCCTTTCAAATGCCAAACGTTTCTGCAGTTGTTTGAACTTG 1167
Query 1265 ACGATGAGTACATTCAACAAGAGATAAGAAAGCCTCCCAAGCAGACTACTTGTAATTATA 1324
|||| |||||||| || | |||||||||||||||||||||||| |||||||||| |||
Sbjct 1168 ACGACGAGTACATCCAGCGAGAGATAAGAAAGCCTCCCAAGCAAACTACTTGTAGCCATA 1227
Query 1325 AAACAGGATGGTTCTCTGAAGCGCTGCTTGACAATTTGAGACTCCGTGTAGCTGTGAGGT 1384
|| |||||||||| |||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1228 AATCAGGATGGTTTTCTGAAGCTCTGCTTGATACTTTGAGACTCCGTGTAGCTGTGAGGT 1287
Query 1385 TTGTATCTGTGTTTCCTGAGCCAGGTTTCGAAGACGTTTTTAAATCTATTCAAGAAGAGT 1444
|||| ||||| || |||||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 1288 TTGTGTCTGTCTTCCCTGAGCCAGGTTTCGAAGATGTATTTAAATCCATTCAAGAAGAAT 1347
Query 1445 TTGAGAGGTCTGAAAA-G-ACACGTATTCAGAAAGATG-CACTGCAACCA 1491
|||||||||| ||||| | ||| | ||||||||| | |||| |||||
Sbjct 1348 TTGAGAGGTCAGAAAAAGTACAA--AGTCAGAAAGA-GACACTTAAACCA 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75304414365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5