BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24460.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489310 jgi|Araly1|489310|fgenesh2_kg.6__2444__AT5G24460.1 1321 0.0
> Ahg489310 jgi|Araly1|489310|fgenesh2_kg.6__2444__AT5G24460.1
Length=1095
Score = 1321 bits (715), Expect = 0.0
Identities = 869/940 (92%), Gaps = 24/940 (3%)
Strand=Plus/Plus
Query 87 CGA-TCGTTAGGGGTATTTTGGTCAATTGACATGTTCGTTGGCCCATCTCCGCCGCACAC 145
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 CGATTCGTTAGGGGTATTTTGGTCAATTGACATGTTCGTTGGCCCATCTCCGCCGCACAC 111
Query 146 ACCACTCGTTAACCGCCGTAACATCAACAACCACCGGCCTCGTAACGCAACCGTCACCTC 205
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 112 ACCACTCGTTAACCGCCGT-A-A-CAACAACCACCGGCCTCGTAACGCAACCGTCACCTC 168
Query 206 CGCTTTACCTGATAT-TTTCCTCGCGGCGGTCTCTCTCCTTTTCCTCTGGTCATCTCCTA 264
|||| |||||||| | ||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 169 CGCTCTACCTGATCTATTT-CTCGCGGCGGTTTCTCTTCTCTTCCTCTGGTCATCTCCTA 227
Query 265 AACCTCTAGTCTCTCTTCCTCCGAACAGATTCTCTTTCCCTCTAAATCCTCGCCGTCGAT 324
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 228 AACCTCTACTCTCTCTTCCTCCAAACAGATTCTCTTTCCCTCTAAATCCTCGCCGTCGA- 286
Query 325 CCATCACCGCCATGTCTCGCCGATctcctcctcctcctcctcctACTCAACGCTTCGCTA 384
||| ||||||||||||||||| | |||||||||||||| | ||||||||||||| |
Sbjct 287 --ATCCCCGCCATGTCTCGCCGA--T-CTCCTCCTCCTCCT--T-CTCAACGCTTCGCGA 338
Query 385 ATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGATTACCTTCCGATTCATTCGCCGCTT 444
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 339 ATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGGTTACCTTCCGATTCATTCGCCGCTT 398
Query 445 GGGGAGTCAAACCGGGAACCAAAAACGTTCATAACCTCTGGCTAGAACTCTCCGACGGCG 504
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 399 GGGGAGTCAAACCGGGAACTAAAAACGTTCATAACCTCTGGCTTGAACTCTCCGACGGCG 458
Query 505 AAACTTCTCTCGCCGATTCAACTCCTCCAGTACGCACCGTCAACGTCGTCACCGTTCGAG 564
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 459 AAACTTCTCTCGCCGATTCAACTCCTCCGGTTCGCACCGTCAACGTCGTCACCGTTCGAG 518
Query 565 TAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTA 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTA 578
Query 625 TTCGTGAAAGATTTCGTCCTTTATCAGAGAAAATGAAGCCTGAAGAATCTCCCGACGAAG 684
|| | || ||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 579 TTAGAGAGAGATTTCGTCCGTTATCGGAGAAGATGAAGCCTGAAGAATCTCCCGATGAAG 638
Query 685 CAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTCAATGGCGATGGTGATAACA 744
|||||||||||||||||||||||||||||||||||||||| ||||| |||| | |
Sbjct 639 CAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTTAATGGTGATG---A---CG 692
Query 745 TTGGACAGAGAATTAAGATTCTTCCCGGAACTTATAACAGAAGAGTTGAAGAAAGGAACT 804
||||||||||||||| ||||||||| |||| ||||| ||||||||| || ||||||||||
Sbjct 693 TTGGACAGAGAATTAGGATTCTTCCTGGAAGTTATAGCAGAAGAGTGGAGGAAAGGAACT 752
Query 805 CGCTATCGTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCTGTGAATGCAACGGTGG 864
|||| || ||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 753 CGCTGTCTTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCGGTGGATGCGACGGTGG 812
Query 865 AGGGATTACCGGAGCAAGATTTCTGTACGGAGGAAAAAGAGTACGAGGGAGGAGACTCGA 924
||||| |||||||| |||||||||||||||| || ||||||||||| || ||||||||||
Sbjct 813 AGGGACTACCGGAGGAAGATTTCTGTACGGAAGAGAAAGAGTACGACGGTGGAGACTCGA 872
Query 925 CGA---AAGATTCGGTTGAAACACTCGCCGCTGGGAATGCTGTAACTGTGAAACGACATT 981
||| |||||||||| ||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct 873 CGATGGAAGATTCGGTGGAAACACGCGCCGCTGGAAAAGCTGTAACTGTGAAACGGCATT 932
Query 982 ACTGGAAATGGGTTAGTCCTGATTCGATTCGATCTTaaaa 1021
|||||||||||||||||||||||||||||||||| |||||
Sbjct 933 ACTGGAAATGGGTTAGTCCTGATTCGATTCGATCCTAAAA 972
Score = 163 bits (88), Expect = 2e-39
Identities = 118/131 (90%), Gaps = 7/131 (5%)
Strand=Plus/Plus
Query 1047 AAATTTTATCAATCTTGCTTTTGATACATGAATAATCAGAGAGCCATGTAGAGATACATA 1106
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 970 AAATTTTATCAATCTTG---AAGATACATGAATAATC--AGAGCCATGTAGAGATACATA 1024
Query 1107 TACACA--TTTATATATGTTCATAATCATCTTCTTCGTTTGGCTATTTTTGTGTTAGTGG 1164
|||||| |||||||||||||||||||||||||||||||||||||| |||| | || |||
Sbjct 1025 TACACATTTTTATATATGTTCATAATCATCTTCTTCGTTTGGCTATGTTTGAGCTAATGG 1084
Query 1165 ATACTATTCTC 1175
|||||||||||
Sbjct 1085 ATACTATTCTC 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5