BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24470.1
Length=2257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942000 jgi|Araly1|942000|scaffold_602544.1 2385 0.0
Ahg942001 jgi|Araly1|942001|scaffold_602545.1 213 5e-54
> Ahg942000 jgi|Araly1|942000|scaffold_602544.1
Length=1711
Score = 2385 bits (1291), Expect = 0.0
Identities = 1592/1733 (92%), Gaps = 37/1733 (2%)
Strand=Plus/Plus
Query 309 AAGTGTTTGTGTTGTGATAATGACTAGTAGCGAGGAAG-TAGTTGAAGTGACGGTGGTTA 367
|||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |
Sbjct 2 AAGTGTTTGTGTTGTGATAATG---AGTAGCGAGGAAGTTA-TTGAAGTGACGGTGGTGA 57
Query 368 AAGCACCTGAAGCTGGCGGAGGAAAGTTATCACGTCGGAAGATTCGGAAGAAAGACGCCG 427
||||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 58 AAGCAGCTGAGGCTGGTGGAGGAAAGTTATCACGGCGGAAGATGCGGAAGAAAGACGCCG 117
Query 428 --G-T------GTTGATGGTTTGGTGAAGTGGGAGAGATTTCTCCCGAAAATCGCGCTTA 478
| | | ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 118 TAGATGGCGGCGGCGATGGTTTGGTGAAGTGGGAGAGGTTTCTCCCGAAAATCGCGCTAA 177
Query 479 GAGTTTTGCTCGTTGAAGCTGATGATTCTACTAGACAGATTATCGCTGCTCTTCTCAGGA 538
|||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 178 GAGTTTTGCTTGTTGAAGCTGATGATTCGACTAGACAGATTATCTCTGCTCTTCTCAGGA 237
Query 539 AATGTAGTTACAGAGTTGCTGCAGTACCTGATGGCTTAAAAGCTTGGGAGATGCTAAAAG 598
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 238 AATGTAGTTACAGAGTTGCTGCTGTGCCTGATGGCTTAAAGGCTTGGGAGATGCTTAAAG 297
Query 599 GAAAGCCTGAAAGTGTTGATTTGATATTAACAGAGGTTGATCTACCTTCAATATCTGGAT 658
|||| || ||||| || ||||||||| |||||||||||||||| ||||| || ||||| |
Sbjct 298 GAAAACCCGAAAGCGTCGATTTGATACTAACAGAGGTTGATCTGCCTTCGATCTCTGGTT 357
Query 659 ATGCTCTGCTAACACTTATCATGGAGCATGATATTTGCAAGAACATTCCTGTTATAATGA 718
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 358 ACGCTCTGCTAACACTTATCATGGAGCATGATATCTGCAAGAACATTCCTGTTAT-A--A 414
Query 719 TGTCGACACAGGACTCGGTGAATACTGTGTATAAGTGTATGTTGAAAGGTGCGGCTGATT 778
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 -GT----AC-GGACTCGGTGAATACTGTGTATAAGTGTATGTTGAAAGGTGCGGCTGATT 468
Query 779 ATCTTGTTAAGCCGTTGAGGAGGAATGAGCTTAGAAATCTTTGGCAGCATGTCTGGAGAA 838
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 469 ATCTTGTTAAGCCGTTGAGGAGGAATGAGCTGAGAAATCTCTGGCAACATGTCTGGAGAA 528
Query 839 GACAAACTTCACTTGCTCCTGATAGCTTTCC-ATGGAATGAGAGTGTTGGACAGCAGAAA 897
||||||||||||| ||||||||||||||||| ||| |||||| |||||||||||
Sbjct 529 GACAAACTTCACTCGCTCCTGATAGCTTTCCGTTGG-ATGAGA------GACAGCAGAAA 581
Query 898 GCCGAGGGTGCGTCTGCAAACAACTCGAACGGAAAGAGAGACGATCATGTTGTGAGTGGG 957
||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||
Sbjct 582 GCCGAGGGTGCGTCTGCAAACAATTCGAACGGAAAGAGAGACGAGCATGTTGTAATTGGG 641
Query 958 AATGGTGGTGATGCCCAGAGCTCGTGTACAAGACCAGAGATGGAAGGTGAGAGCGCAGAC 1017
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 642 AATGGTGGTGATGCTCAGAGCTCGTGTACAAGACCAGAGATGGAAGGCGAGAGCGCAGAC 701
Query 1018 GTGGAGGTTAGTGCGAGAGACGCAGTACAGATGGAGTGCGCAAAGTCTCAGTTTAATGAG 1077
|||||||| | |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 702 GTGGAGGTCAACGCGAGAGACGCAGTTCAGATGGAGTGCGCAAAGTCTCAGTTCAAAGAG 761
Query 1078 ACACGGCTTCTAGCAAATGAGTTGCAG-AGTAAGC-AAGCAGAAGCCATTGACTTCATGG 1135
||||||||||||||||||||| ||||| | | | | || | ||||||||||||||||||
Sbjct 762 ACACGGCTTCTAGCAAATGAGATGCAGAATTCATCGAA--AAAAGCCATTGACTTCATGG 819
Query 1136 GAGCATCGTTTAGAAGAACTGGACGACGTAACAGAGAAGAAAGTGTTGCTCAATACGAAT 1195
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 820 GAGCATCGTTTAGAAGAACTGGACAACGTAACAGAGAAGAAAGTGTTGCCCAATACGAAT 879
Query 1196 CTCGGATAGAGCTTGATCTTTCTCTGAGAAGACCTAAT-GCTTCTGAGAACCAATCTTCT 1254
||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||
Sbjct 880 CTCGGATAGAGCTTGATCTCTCTCTGAGAAGACCT-ATCGCTTCCGAGAACCAATCTTCT 938
Query 1255 GGAGACCGGCCTTCTCTTCATCCTTCTAGTGCCTCAGCTTTCACACGGTACGTTCACAGG 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GGAGACCGGCCTTCTCTTCATCCTTCTAGTGCCTCAGCTTTCACACGGTACGTTCACAGG 998
Query 1315 CCGTTGCAGACACAATGTTCAGCCTCCCCAGTGGTTACTGATCAAAGAAAGAATGTTGCA 1374
|| ||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||
Sbjct 999 CCATTGCAGACACAATGTTCGGCCTCCCCGGTGGTTCCTGATCAAAGAAAGAATTTTGCG 1058
Query 1375 GCAAGTCAAGATGATAACATTGTGCTAATGAACCAATACAATACATCTGAACCGCCTCCA 1434
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1059 GCAAGTCAAGATGATAACATTGTGCTAATCAACCAATACAATACATCTGAACCACCTCCA 1118
Query 1435 AATGCTCCAAGAAGAAACGACACCAGCTTTTACACTGGAGCTGACTCACCTGGTCCACCG 1494
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1119 AGTGCTCCAAGAAGAAACGACACCAGCTTTTACACTGGAGCTGACTCACCGGGTCCACCG 1178
Query 1495 TTTAGTAATCAGCTGAATTCTTGGCCGGGACAGAGTTCATACCCTACGCCAACCCCTATC 1554
|||||||||||| ||||||||||||| |||||| |||| ||||| ||||||||||| |||
Sbjct 1179 TTTAGTAATCAGATGAATTCTTGGCCAGGACAGGGTTCTTACCCAACGCCAACCCCCATC 1238
Query 1555 AACAATATACAGTTCAGAGATCCCAACACAGCTTATACATCTGCAATGGCTCCTGCTTCA 1614
|| |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct 1239 AATAATATACAGTTCAGGGGTCCCAACACAGCTTATGCATCTGCAATGGCTCCTGCTTCA 1298
Query 1615 CTCTCCCCAAGCCCTAGTTCCGTTAGCCCGCATGAGTACAGTTCCATGTTTCACCCATTC 1674
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1299 GTCTCCCCAAGCCCTAGTTCCGTTAGCCCACATGAATACAGTTCCATGTTTCACCCATTC 1358
Query 1675 AACAGTAAACCCGAGGGGTTACAAGACCGGGATTGTTCCATGGATGTAGATGAGAGGAGA 1734
|| ||||||||||||| || ||||| || ||| |||||||||||||||| |||||||||
Sbjct 1359 AATGGTAAACCCGAGGGTTTGCAAGAGCGAGATGGTTCCATGGATGTAGAGGAGAGGAGA 1418
Query 1735 TACGTCTCTTCTGCAACCGAACATAGTGCAATAGGCAATCACATTGATCAGCTTATTGAG 1794
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1419 TACATCTCTTCTGCAACCGAACATAGTGCAATAGGCAATCACATTGATCAGCCTATTGAG 1478
Query 1795 AAGAAGAACGAAGATGGCTATTCATTATCCGTCGGGAAAATTCAGCAATCTCTTCAACGA 1854
||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||
Sbjct 1479 AAGAAGAACGAAGATGGATATTCATCGTCTGTCGGGAAATTTCAGCAATCTCTTCAACGG 1538
Query 1855 GAAGCCGCTTTAACCAAATTCCGAATGAAGCGAAAGGACAGATGTTATGAGAAAAAGGTT 1914
||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 1539 GAAGCTGCTTTAACCAAATTCCGGATGAAGCGTAAGGACAGATGTTTTGAGAAAAAGGTT 1598
Query 1915 CGTTACGAGAGCCGGAAGAAATTAGCAGAGCAACGACCACGAATCAAAGGCCAATTCGTT 1974
||||| |||||||| |||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 1599 CGTTATGAGAGCCGTAAGAAACTGGCAGAGCAACGACCGCGAATCAAAGGCCAATTCGTT 1658
Query 1975 CGTCAAGTCCAATCCACACAAGCTCCATAGTGATCCAACAAATTGATATATTA 2027
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1659 CGTCAAGTCCAATCCACACAAGCTCAACAGTGATCCAACAAATTGATATATTA 1711
> Ahg942001 jgi|Araly1|942001|scaffold_602545.1
Length=318
Score = 213 bits (115), Expect = 5e-54
Identities = 172/198 (87%), Gaps = 10/198 (5%)
Strand=Plus/Plus
Query 1 ATGTGGCAAACGTGGCCACGTCAGCCAATTCTACTAGATATTTTTTCAAATCCAAATACT 60
||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 124 ATGTGGCAAACGTGGCCACGTCAGCCAATTCTACTAGATATTTTT-CAAACCCCTTTACC 182
Query 61 CTTTCCACAACCGTTAGATCATGGTCGGTTCGCCACCCACTTTCAATCAT-AACCGTTAA 119
|||| |||||||||||||||| ||||||||| || |||| | ||||| | |||||||||
Sbjct 183 CTTTTCACAACCGTTAGATCAAGGTCGGTTCACCGCCCAAATCCAATC-TCAACCGTTAA 241
Query 120 AACATTCGCTAGATTTTTTCTAGATATTTTCTTTTCTC-CACACTA-TT--ATAGAAAGA 175
|||||||||||||||||||||||||||||| ||||| | |||| || || |||||| ||
Sbjct 242 AACATTCGCTAGATTTTTTCTAGATATTTTTTTTTCCCTCACAATAATTTTATAGAA-GA 300
Query 176 ATAAAGTTCtttt-tttt 192
|||||| ||||| ||||
Sbjct 301 ATAAAGA-CTTTTATTTT 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84979336595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5