BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24470.1 Length=2257 Score E Sequences producing significant alignments: (Bits) Value Ahg942000 jgi|Araly1|942000|scaffold_602544.1 2385 0.0 Ahg942001 jgi|Araly1|942001|scaffold_602545.1 213 5e-54 > Ahg942000 jgi|Araly1|942000|scaffold_602544.1 Length=1711 Score = 2385 bits (1291), Expect = 0.0 Identities = 1592/1733 (92%), Gaps = 37/1733 (2%) Strand=Plus/Plus Query 309 AAGTGTTTGTGTTGTGATAATGACTAGTAGCGAGGAAG-TAGTTGAAGTGACGGTGGTTA 367 |||||||||||||||||||||| ||||||||||||| || |||||||||||||||| | Sbjct 2 AAGTGTTTGTGTTGTGATAATG---AGTAGCGAGGAAGTTA-TTGAAGTGACGGTGGTGA 57 Query 368 AAGCACCTGAAGCTGGCGGAGGAAAGTTATCACGTCGGAAGATTCGGAAGAAAGACGCCG 427 ||||| |||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| Sbjct 58 AAGCAGCTGAGGCTGGTGGAGGAAAGTTATCACGGCGGAAGATGCGGAAGAAAGACGCCG 117 Query 428 --G-T------GTTGATGGTTTGGTGAAGTGGGAGAGATTTCTCCCGAAAATCGCGCTTA 478 | | | ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 118 TAGATGGCGGCGGCGATGGTTTGGTGAAGTGGGAGAGGTTTCTCCCGAAAATCGCGCTAA 177 Query 479 GAGTTTTGCTCGTTGAAGCTGATGATTCTACTAGACAGATTATCGCTGCTCTTCTCAGGA 538 |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 178 GAGTTTTGCTTGTTGAAGCTGATGATTCGACTAGACAGATTATCTCTGCTCTTCTCAGGA 237 Query 539 AATGTAGTTACAGAGTTGCTGCAGTACCTGATGGCTTAAAAGCTTGGGAGATGCTAAAAG 598 |||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct 238 AATGTAGTTACAGAGTTGCTGCTGTGCCTGATGGCTTAAAGGCTTGGGAGATGCTTAAAG 297 Query 599 GAAAGCCTGAAAGTGTTGATTTGATATTAACAGAGGTTGATCTACCTTCAATATCTGGAT 658 |||| || ||||| || ||||||||| |||||||||||||||| ||||| || ||||| | Sbjct 298 GAAAACCCGAAAGCGTCGATTTGATACTAACAGAGGTTGATCTGCCTTCGATCTCTGGTT 357 Query 659 ATGCTCTGCTAACACTTATCATGGAGCATGATATTTGCAAGAACATTCCTGTTATAATGA 718 | |||||||||||||||||||||||||||||||| |||||||||||||||||||| | | Sbjct 358 ACGCTCTGCTAACACTTATCATGGAGCATGATATCTGCAAGAACATTCCTGTTAT-A--A 414 Query 719 TGTCGACACAGGACTCGGTGAATACTGTGTATAAGTGTATGTTGAAAGGTGCGGCTGATT 778 || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 -GT----AC-GGACTCGGTGAATACTGTGTATAAGTGTATGTTGAAAGGTGCGGCTGATT 468 Query 779 ATCTTGTTAAGCCGTTGAGGAGGAATGAGCTTAGAAATCTTTGGCAGCATGTCTGGAGAA 838 ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 469 ATCTTGTTAAGCCGTTGAGGAGGAATGAGCTGAGAAATCTCTGGCAACATGTCTGGAGAA 528 Query 839 GACAAACTTCACTTGCTCCTGATAGCTTTCC-ATGGAATGAGAGTGTTGGACAGCAGAAA 897 ||||||||||||| ||||||||||||||||| ||| |||||| ||||||||||| Sbjct 529 GACAAACTTCACTCGCTCCTGATAGCTTTCCGTTGG-ATGAGA------GACAGCAGAAA 581 Query 898 GCCGAGGGTGCGTCTGCAAACAACTCGAACGGAAAGAGAGACGATCATGTTGTGAGTGGG 957 ||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||| Sbjct 582 GCCGAGGGTGCGTCTGCAAACAATTCGAACGGAAAGAGAGACGAGCATGTTGTAATTGGG 641 Query 958 AATGGTGGTGATGCCCAGAGCTCGTGTACAAGACCAGAGATGGAAGGTGAGAGCGCAGAC 1017 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 642 AATGGTGGTGATGCTCAGAGCTCGTGTACAAGACCAGAGATGGAAGGCGAGAGCGCAGAC 701 Query 1018 GTGGAGGTTAGTGCGAGAGACGCAGTACAGATGGAGTGCGCAAAGTCTCAGTTTAATGAG 1077 |||||||| | |||||||||||||| |||||||||||||||||||||||||| || ||| Sbjct 702 GTGGAGGTCAACGCGAGAGACGCAGTTCAGATGGAGTGCGCAAAGTCTCAGTTCAAAGAG 761 Query 1078 ACACGGCTTCTAGCAAATGAGTTGCAG-AGTAAGC-AAGCAGAAGCCATTGACTTCATGG 1135 ||||||||||||||||||||| ||||| | | | | || | |||||||||||||||||| Sbjct 762 ACACGGCTTCTAGCAAATGAGATGCAGAATTCATCGAA--AAAAGCCATTGACTTCATGG 819 Query 1136 GAGCATCGTTTAGAAGAACTGGACGACGTAACAGAGAAGAAAGTGTTGCTCAATACGAAT 1195 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 820 GAGCATCGTTTAGAAGAACTGGACAACGTAACAGAGAAGAAAGTGTTGCCCAATACGAAT 879 Query 1196 CTCGGATAGAGCTTGATCTTTCTCTGAGAAGACCTAAT-GCTTCTGAGAACCAATCTTCT 1254 ||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||| Sbjct 880 CTCGGATAGAGCTTGATCTCTCTCTGAGAAGACCT-ATCGCTTCCGAGAACCAATCTTCT 938 Query 1255 GGAGACCGGCCTTCTCTTCATCCTTCTAGTGCCTCAGCTTTCACACGGTACGTTCACAGG 1314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 939 GGAGACCGGCCTTCTCTTCATCCTTCTAGTGCCTCAGCTTTCACACGGTACGTTCACAGG 998 Query 1315 CCGTTGCAGACACAATGTTCAGCCTCCCCAGTGGTTACTGATCAAAGAAAGAATGTTGCA 1374 || ||||||||||||||||| |||||||| |||||| ||||||||||||||||| |||| Sbjct 999 CCATTGCAGACACAATGTTCGGCCTCCCCGGTGGTTCCTGATCAAAGAAAGAATTTTGCG 1058 Query 1375 GCAAGTCAAGATGATAACATTGTGCTAATGAACCAATACAATACATCTGAACCGCCTCCA 1434 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1059 GCAAGTCAAGATGATAACATTGTGCTAATCAACCAATACAATACATCTGAACCACCTCCA 1118 Query 1435 AATGCTCCAAGAAGAAACGACACCAGCTTTTACACTGGAGCTGACTCACCTGGTCCACCG 1494 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1119 AGTGCTCCAAGAAGAAACGACACCAGCTTTTACACTGGAGCTGACTCACCGGGTCCACCG 1178 Query 1495 TTTAGTAATCAGCTGAATTCTTGGCCGGGACAGAGTTCATACCCTACGCCAACCCCTATC 1554 |||||||||||| ||||||||||||| |||||| |||| ||||| ||||||||||| ||| Sbjct 1179 TTTAGTAATCAGATGAATTCTTGGCCAGGACAGGGTTCTTACCCAACGCCAACCCCCATC 1238 Query 1555 AACAATATACAGTTCAGAGATCCCAACACAGCTTATACATCTGCAATGGCTCCTGCTTCA 1614 || |||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| Sbjct 1239 AATAATATACAGTTCAGGGGTCCCAACACAGCTTATGCATCTGCAATGGCTCCTGCTTCA 1298 Query 1615 CTCTCCCCAAGCCCTAGTTCCGTTAGCCCGCATGAGTACAGTTCCATGTTTCACCCATTC 1674 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1299 GTCTCCCCAAGCCCTAGTTCCGTTAGCCCACATGAATACAGTTCCATGTTTCACCCATTC 1358 Query 1675 AACAGTAAACCCGAGGGGTTACAAGACCGGGATTGTTCCATGGATGTAGATGAGAGGAGA 1734 || ||||||||||||| || ||||| || ||| |||||||||||||||| ||||||||| Sbjct 1359 AATGGTAAACCCGAGGGTTTGCAAGAGCGAGATGGTTCCATGGATGTAGAGGAGAGGAGA 1418 Query 1735 TACGTCTCTTCTGCAACCGAACATAGTGCAATAGGCAATCACATTGATCAGCTTATTGAG 1794 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1419 TACATCTCTTCTGCAACCGAACATAGTGCAATAGGCAATCACATTGATCAGCCTATTGAG 1478 Query 1795 AAGAAGAACGAAGATGGCTATTCATTATCCGTCGGGAAAATTCAGCAATCTCTTCAACGA 1854 ||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||| Sbjct 1479 AAGAAGAACGAAGATGGATATTCATCGTCTGTCGGGAAATTTCAGCAATCTCTTCAACGG 1538 Query 1855 GAAGCCGCTTTAACCAAATTCCGAATGAAGCGAAAGGACAGATGTTATGAGAAAAAGGTT 1914 ||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| Sbjct 1539 GAAGCTGCTTTAACCAAATTCCGGATGAAGCGTAAGGACAGATGTTTTGAGAAAAAGGTT 1598 Query 1915 CGTTACGAGAGCCGGAAGAAATTAGCAGAGCAACGACCACGAATCAAAGGCCAATTCGTT 1974 ||||| |||||||| |||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 1599 CGTTATGAGAGCCGTAAGAAACTGGCAGAGCAACGACCGCGAATCAAAGGCCAATTCGTT 1658 Query 1975 CGTCAAGTCCAATCCACACAAGCTCCATAGTGATCCAACAAATTGATATATTA 2027 ||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1659 CGTCAAGTCCAATCCACACAAGCTCAACAGTGATCCAACAAATTGATATATTA 1711 > Ahg942001 jgi|Araly1|942001|scaffold_602545.1 Length=318 Score = 213 bits (115), Expect = 5e-54 Identities = 172/198 (87%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 1 ATGTGGCAAACGTGGCCACGTCAGCCAATTCTACTAGATATTTTTTCAAATCCAAATACT 60 ||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 124 ATGTGGCAAACGTGGCCACGTCAGCCAATTCTACTAGATATTTTT-CAAACCCCTTTACC 182 Query 61 CTTTCCACAACCGTTAGATCATGGTCGGTTCGCCACCCACTTTCAATCAT-AACCGTTAA 119 |||| |||||||||||||||| ||||||||| || |||| | ||||| | ||||||||| Sbjct 183 CTTTTCACAACCGTTAGATCAAGGTCGGTTCACCGCCCAAATCCAATC-TCAACCGTTAA 241 Query 120 AACATTCGCTAGATTTTTTCTAGATATTTTCTTTTCTC-CACACTA-TT--ATAGAAAGA 175 |||||||||||||||||||||||||||||| ||||| | |||| || || |||||| || Sbjct 242 AACATTCGCTAGATTTTTTCTAGATATTTTTTTTTCCCTCACAATAATTTTATAGAA-GA 300 Query 176 ATAAAGTTCtttt-tttt 192 |||||| ||||| |||| Sbjct 301 ATAAAGA-CTTTTATTTT 317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84979336595 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5