BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24480.1

Length=1053
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945091 jgi|Araly1|945091|scaffold_701320.1                        106    4e-22


> Ahg945091 jgi|Araly1|945091|scaffold_701320.1
Length=622

 Score =  106 bits (57),  Expect = 4e-22
 Identities = 163/212 (77%), Gaps = 16/212 (8%)
 Strand=Plus/Plus

Query  511  TTGAAGATGATCGACATTATGATCCCGTCTCTAAGGAGCGATGATTACCGAAGCTTCTTT  570
            ||||||| || |||||||||||||||||||| |||||||| || ||||||  ||||||| 
Sbjct  209  TTGAAGAAGAACGACATTATGATCCCGTCTCCAAGGAGCGGTGGTTACCGTTGCTTCTTC  268

Query  571  AAGT--GTTCATCTCCGA-TTCATT-TGCTTATTGACTTCATCCTTGAG-ATA-ATTAGC  624
            || |  |||| |  || | ||| || ||  |||||| ||||  |   ||  || |||| |
Sbjct  269  AA-TCCGTTC-T-ACCCATTTC-TTCTGAATATTGATTTCAAAC--AAGTTTATATTATC  322

Query  625  TACAC-CT-TGGGCACTACTCTTGAAAGTAAAAGTTTGATGAAGAATGGCATTATGATCC  682
             | ||  | | |    || || ||||| |  ||| |||| ||||||||||||||||||||
Sbjct  323  -A-ACTTTATAGTTTGTATTCATGAAATTGGAAGCTTGAGGAAGAATGGCATTATGATCC  380

Query  683  CGTCTCCAAGGAACGGTGGTTACCAAATCTTC  714
            |||||||||||| |||||||||||||| ||||
Sbjct  381  CGTCTCCAAGGAGCGGTGGTTACCAAAGCTTC  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39190358676


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5