BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24500.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326742 jgi|Araly1|326742|fgenesh1_pm.C_scaffold_6001962 1299 0.0
> Ahg326742 jgi|Araly1|326742|fgenesh1_pm.C_scaffold_6001962
Length=918
Score = 1299 bits (703), Expect = 0.0
Identities = 850/918 (93%), Gaps = 21/918 (2%)
Strand=Plus/Plus
Query 22 ATGCTAAGCTCCATCATCGACGACAAACCTGCCTCCTCCACTTGGCTCAACCGCCTCCGA 81
||||| |||||||||||||||||||| || | | | |||||||||||||||||||||||
Sbjct 1 ATGCTCAGCTCCATCATCGACGACAAGCCCGTCGCTTCCACTTGGCTCAACCGCCTCCGT 60
Query 82 TTAAACAGAGG-C-CT-CACAACCGACGATGACGATGCTTCTGGCAATCCACTTACTCTC 138
||||||||||| | || ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTAAACAGAGGACTCTCCACCACCGACGACGACGATGCTTCTGGCAATCCACTTACTCTC 120
Query 139 GACGACTTTCTCCGCCGCAACCACCACACGGAAATCGCCGCCACTAGTTCCGCTTCCGAT 198
||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 121 GACGACTTTCTCCGCCGCAACCACCACACCGAAATCACCGCCACTAGTTCCGCCTCCGAT 180
Query 199 TCACCTCCATCTGCTCCAATTCCTTCAGATCCAGAATTAGCTGAAAGTCCATCGGAGGAG 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TCACCTCCATCTGCTCCAATTCCTTCAGATCCAGAATTAGCTGAAAGTCCATCGGAAGAA 240
Query 259 CCAGTTCCTGGAGAATGGTACGGCGTGATGAGCGATGTTCTCTTCGAGCTATTCAATTTC 318
|||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 241 CCAGTTCCCGGAGAATGGTACGGCGTGATGAGCGATGTTCTCTCCGAACTATTCAATTTC 300
Query 319 AGCGGCTCCTCTAAATCTTCCACAATTCCCGGGAAGAAGAAGTTACCAAGGAAACAATCA 378
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 AGCGGCTCATCTAAATCTTCCACAATTCCCGGGAAGAAGAAGTTGCCAAGGAAACAATCA 360
Query 379 AACCCTAGGCATTGCTCTTTAGAGACTCCTGAA-GACGTTGTTGTTCCGTTGGTAAATCA 437
||||||||||||||||||||||| |||||| || ||||||||| || |||||||||||
Sbjct 361 AACCCTAGGCATTGCTCTTTAGACACTCCT-AACGACGTTGTT---CCATTGGTAAATCA 416
Query 438 GAAAAGCGACGACGCTAATTGTCTCCCTAGTGTTCGTGAATTCGCTACTTCATCGTCGCG 497
||| ||| ||||||| |||||| | || |||||||||||||||||||||||||| |||||
Sbjct 417 GAAGAGCAACGACGCGAATTGTGTTCCAAGTGTTCGTGAATTCGCTACTTCATCATCGCG 476
Query 498 TAGTTCATACAATAAGAAACCTCCGGCGCCGGAGATTAGggaga-ggagaagaagtgtag 556
|||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 477 TAGTTCGTACAATAAGAAACCTCCGGCGCCGGAGATTAGGG-GAAGGAGAAGAAGTATAG 535
Query 557 tggaaggtgatgg-tgtggatgaggaagaagagaaaggagagaaagaTCTAGTTGGGTTT 615
||||||||| || |||||||||||| ||||||||||||||||| ||| ||||||| |||
Sbjct 536 CGGAAGGTGA-GGATGTGGATGAGGAGGAAGAGAAAGGAGAGAAGGATTTAGTTGGATTT 594
Query 616 TCGAGAAGTGAAGTGACCGTGATTGATACTAGCTTTAAGATTTGGAAATCTGAGAAACTT 675
||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 595 TCGAGGAGTGAAGTGACGGTGATTGATACGAGCTTCAAGATTTGGAAATCTGAGAAACTT 654
Query 676 GTTTTCAGGAGGAGAAATGTTTGGAAAGtgagagagaagaaaggtaaatcaagagttgtt 735
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 GTTTTCAGGAGGAGAAATGTTTGGAAAGTGAGGGAGAAGAAAGGTAAATCAAGAGTTGTT 714
Query 736 tcgaagttgaagaagttgatgaagaagaagaagaagaa-aaa--gaggaaatgtgatgat 792
|||||| ||||||| |||||||||||||||||||||| ||| |||||||||||| | |
Sbjct 715 TCGAAGACGAAGAAGATGATGAAGAAGAAGAAGAAGAAGAAAAAGAGGAAATGTGACG-T 773
Query 793 gttgatgatgatgatgGTGGAATTGCTCGGaaaaaaaGCAAGAAGATGAAGATTTCAACA 852
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 774 C--GATGATGATGATGGTGAAATTGCTCGGAAAA---GCAAGAAGATGAAGATTTCAACA 828
Query 853 TCAGTTTCAGACAATAATCCACGCTATAACGTCGAAGAGATTCATGATGAACCAGAAAGC 912
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 829 TCAGTTTCAGACAATAATCCACGCTATGACGTCGAAGAGATTCATGATGAACCAGAAAGC 888
Query 913 AGCAATGTCAGCCGAAGG 930
||||||||||||||||||
Sbjct 889 AGCAATGTCAGCCGAAGG 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5