BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24510.1
Length=460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489313 jgi|Araly1|489313|fgenesh2_kg.6__2447__AT5G24510.1 220 5e-57
> Ahg489313 jgi|Araly1|489313|fgenesh2_kg.6__2447__AT5G24510.1
Length=368
Score = 220 bits (119), Expect = 5e-57
Identities = 168/190 (88%), Gaps = 9/190 (5%)
Strand=Plus/Plus
Query 100 GCCAACGTGAATGTCGAGTCATACTGGCCTAGCCTCTTTGCTAAGCTATGTGAGAAGAAG 159
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 70 GCCAATGTGAATGTTGAGTCATACTGGCCTAGCCTCTTTGCTAAGCTTTGTGAGAAGAAG 129
Query 160 AACATCGACGATCTCATCATGAATGTAGGAGCCGGTGGTTGTGGT-GTGG--CTC--G-T 213
|||||||| ||||||||||||||||||||||| |||||||||||| |||| ||| | |
Sbjct 130 AACATCGATGATCTCATCATGAATGTAGGAGCAGGTGGTTGTGGTTGTGGTTCTCTTGGT 189
Query 214 CCAGTTACCACTGCTGCTCCTACCGCTTCTCAATCAGTCTCTAT-TCCCG-AGGAGAAGA 271
|||| |||| || |||||||| ||| ||||||||||| |||| | |||| | |||||||
Sbjct 190 CCAGATACCGCTTCTGCTCCTGCCGTTTCTCAATCAGCCTCT-TCTCCCCCAAGAGAAGA 248
Query 272 AGAATGAGAT 281
||||||||||
Sbjct 249 AGAATGAGAT 258
Score = 121 bits (65), Expect = 6e-27
Identities = 69/71 (97%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1 ATGTCGACCAGTGAGCTCGCCTGCACTTATGCTGCTCTCATCCTCCACGATGATGGAATC 60
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1 ATGTCGACCAGTGAGCTCGCCTGCACTTATGCGGCTCTCATCCTCCACGGTGATGGAATC 60
Query 61 GAGATCACCGC 71
|||||||||||
Sbjct 61 GAGATCACCGC 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16635836804
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5