BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24520.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489315 jgi|Araly1|489315|fgenesh2_kg.6__2449__AT5G24520.2 1818 0.0
> Ahg489315 jgi|Araly1|489315|fgenesh2_kg.6__2449__AT5G24520.2
Length=1371
Score = 1818 bits (984), Expect = 0.0
Identities = 1118/1181 (95%), Gaps = 15/1181 (1%)
Strand=Plus/Plus
Query 32 GACTGACACTGACCTCAAAACTCTCCTCTCACTTTCGTCGTGAAGAAGCCAAATCTCGAA 91
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 22 GACTGACACTGACCTCAAAACTCTCCTCTCTCTTTCGTCGTGAAGAAGCCAAATCTCGAA 81
Query 92 TCGAATCAGCACCACACATTTCCATGGATAATTCAGCTCCAGATTCGTTATCCAGATCGG 151
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 TCGAATCAGAATCACTCATTTCCATGGATAATTCAGCTCCAGATTCGTTATCCAGATCGG 141
Query 152 AAACCGCCGTCACATACGACTCACCATATCCACTCTACGCCATGGCTTTCTCTTCTCTCC 211
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 142 AAACCGCCGTCACATACGACTCACCTTATCCACTCTACGCCATGGCTTTCTCTTCTCTCC 201
Query 212 GCTCATCCTCCGGTCACAGAATCGCCGTCGGAAGCTTCCTCGAAGATTACAACAACCGCA 271
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GTTCATCCTCCGGTCACAGAATCGCCGTCGGAAGCTTCCTCGAAGATTACAACAACCGCA 261
Query 272 TCGACATTCTCTCTTTCGATTCCGATTCAATGACCGTTAAGCCTC-TCCCGAATCTCTCC 330
|||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 262 TCGATATTCTCTCTTTCGATTCCGATTCCATGACCGTTAAGCCTCATCCA-AATCTCTCT 320
Query 331 TTCGAGCATCCTTATCCTCCAACAAAGCTAATGTTCAGtcctccttctctccgtcgtcct 390
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 321 TTCGAACATCCTTATCCTCCAACAAAGCTAATGTTTAGTCCTCCTTCTCTCCGTCGTCCT 380
Query 391 tcct-ccggagatctcctcgcttcctccggcgatttcctccgTCTTTGGGAAATTAACGA 449
|| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TC-TGCCGGAGATCTACTCGCTTCCTCCGGCGATTTCCTCCGTCTTTGGGAAATTAACGA 439
Query 450 AGATTCATCAACCGTCGAGCCAATCTCGGTTCTCAACAACAGCAAAACGAGCGAGTTTTG 509
|||||| |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 440 AGATTCTTCAACCGTTGAGCCGATCTCGGTTCTCAACAACAGCAAGACGAGTGAGTTTTG 499
Query 510 TGCGCCGTTGACTTCCTTCGATTGGAACGATGTAGAGCCGAAACGTCTCGGAACTTGTAG 569
||| |||||||| || || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 500 TGCTCCGTTGACCTCTTTTGATTGGAACGATGTGGAGCCGAAACGGCTCGGAACTTGTAG 559
Query 570 TATTGATACGACGTGTACGATTTGGGATATTGAGAAGTCTGTTGTTGAGACTCAGCTTAT 629
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 560 TATTGATACGACTTGTACGATTTGGGATATTGAGAAGTCTGTTGTTGAGACTCAGCTCAT 619
Query 630 AGCTCATGATAAAGAGGTTCATGACATTGCTTGGGGAGAAGCTAGGGTTTTCGCATCAGT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 620 AGCTCATGATAAAGAGGTTCATGACATTGCTTGGGGAGAAGCTAGGGTTTTCGCATCGGT 679
Query 690 CTCTGCTGATGGATCCGTTAGGATCTTTGATTTACGTGATAAGGAACATTCTACAATCAT 749
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 680 CTCGGCTGATGGATCCGTTAGGATCTTTGATTTACGCGATAAGGAACATTCTACAATCAT 739
Query 750 TTACGAGAGTCCTCAGCCTGATACGCCT-TTGTTAAGACTTGCTTGGAACAAACAAGATC 808
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
Sbjct 740 CTACGAGAGTCCTCAGCCTGATACGCCTCTT-TTAAGACTTGCTTGGAACAAGCAAGACC 798
Query 809 TTAGATATATGGCTACGATTTTGATGGATTCTAATAAGGTTGTGATTCTCGATATTCGTT 868
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TTAGGTATATGGCGACGATTTTGATGGATTCTAATAAGGTTGTGATTCTCGATATTCGTT 858
Query 869 CGCCGACTATGCCTGTTGCTGAGCTTGAAAGACATCAGGCTAGTGTGAATGCTATAGCTT 928
||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 859 CGCCGACTATGCCTGTTGCGGAGCTTGAAAGGCACCAGGCTAGTGTTAATGCTATAGCTT 918
Query 929 GGGCGCCTCAGAGCTGTAAACATATTTGTTCTGGTGGTGATGATACACAGGCTCTTATTT 988
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 919 GGGCGCCTCAGAGCTGTAAACATATTTGCTCTGGTGGTGATGATACACAGGCTCTTATTT 978
Query 989 GGGAGCTTCCTACTGTTGCTGGACCCAATGGGATTGATCCGATGTCGGTTTATTCGGCTG 1048
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 979 GGGAGCTTCCTACTGTAGCTGGACCTAATGGGATTGATCCGATGTCGGTTTATTCGGCTG 1038
Query 1049 GTTCGGAGATTAATCAGTTGCAGTGGTCTTCTTCGCAGCCTGATTGGATTGGTATTGCTT 1108
| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1039 GCTCGGAGATAAATCAGTTGCAGTGGTCTTCTTCGCAGCCTGACTGGATTGGAATTGCTT 1098
Query 1109 TTGCTAACAAAATGCAGCTCCTTAGAGTTTGAGGTGCAGATGTGAAGTGATCAATAAGGA 1168
| ||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 1099 TCGCTAACAAAATGCAGCTCCTTAGAGTTTGAG---C---TGTGAAGTGATCAAC--GGA 1150
Query 1169 TTTTAGCATAGACCCGTATAATCGTCATGTGCGTAAG-TAG 1208
|||||||||||||||||||||||||||||||||||| |||
Sbjct 1151 CTTTAGCATAGACCCGTATAATCGTCATGTGCGTAAGATAG 1191
Score = 204 bits (110), Expect = 2e-51
Identities = 157/178 (88%), Gaps = 9/178 (5%)
Strand=Plus/Plus
Query 1260 TCTGATTGTAACTAAAACTGAATTCATTTGATGAACCAAATGATACTATTATCTTATGTT 1319
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| || ||
Sbjct 1202 TCTGATTGTAACTAAAACTGAATTCATTTGATGAACCAAATGCTACTATGATCTCATCTT 1261
Query 1320 GTGTATAAAACCCAACCAGGATATATTGCGGTTTCTGGTGTTTAG-ATTTGGTAATTGGA 1378
||||||||| || |||||| |||||||| |||||||||||||||| || ||||| |
Sbjct 1262 GTGTATAAA-CCTAACCAGAATATATTGTGGTTTCTGGTGTTTAGTATC-GGTAA--G-- 1315
Query 1379 GCTTAGTACAATGCAACCCTGTCTTGCTTTATTGGACGTCTCTAAGATAAATCAGCTT 1436
|||||||||||||| ||||||||| ||||||||| ||||| ||||| ||||||||||
Sbjct 1316 -CTTAGTACAATGCA-CCCTGTCTTACTTTATTGGGCGTCTTTAAGACAAATCAGCTT 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5