BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24530.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942007 jgi|Araly1|942007|scaffold_602551.1 1663 0.0
> Ahg942007 jgi|Araly1|942007|scaffold_602551.1
Length=1072
Score = 1663 bits (900), Expect = 0.0
Identities = 1009/1063 (95%), Gaps = 2/1063 (0%)
Strand=Plus/Plus
Query 107 TTCTTCTTCAATTTTCTGACATCAAATGGCGGCAAAGCTGATATCCACCGGTTTCCGTCA 166
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 2 TTCTTCTTCAATTTTCTGACATCAAATGGCGGGAAAGCTGATATCCACCGGTCTCCGTCA 61
Query 167 TACTACTTTGCCGGAAAACTATGTCCGGCCAATCTCCGACCGTCCACGTCTCTCTGAAGT 226
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CACTACTTTGCCGGGAAACTATGTCCGGCCAATCTCCGACCGTCCACGTCTCTCTGAAGT 121
Query 227 CTCTCAACTCGAAGATTTCCCTCTCATCGATCTCTCTTCCACTGATCGATCTTTTCTCAT 286
|||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| |
Sbjct 122 CTCTCAACTCGAAGATTTCCCTCTTATCGATCTTTCTTCCACTGATCGATCTGTTCTCGT 181
Query 287 CCAACAAATCCACCAAGCTTGTGCCCGATTCGGATTTTTTCAGGTCATAAATCACGGAGT 346
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 182 CCAACAAATCCACCAAGCTTGTGCTCGATTCGGGTTTTTTCAGGTCATAAATCACGGAGT 241
Query 347 TAAC-AAACAAATAATAGATGAGATGGTGAGTGTTGCGCGTGAGTTCTTTAGCATGTCTA 405
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 242 -AAGTAAACAAATAATAGATGAGATGGTGAGTGTTGCGCATGAGTTCTTTAGCATGTCTA 300
Query 406 TGGAAGAAAAAATGAAGCTATATTCAGACGATCCAACGAAGACAACAAGATTATCGACGA 465
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 301 TGGAAGAAAAAATGAAGCTATATTCAGACGATCCAACGAAGACGACAAGATTATCAACGA 360
Query 466 GCTTCAATGTGAAGAAAGAAGAAGTCAACAATTGGAGAGACTATCTAAGACTCCATTGTT 525
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GCTTCAATGTAAAGAAAGAAGAAGTCAACAATTGGAGAGACTATCTTAGACTCCATTGTC 420
Query 526 ATCCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAAGGAAATAG 585
|||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |
Sbjct 421 ATCCTATCCACAAGTATGTCCACGAGTGGCCTTCAAACCCTCCTTCTTTCAAGGAAATTG 480
Query 586 TAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATAGAGGAATTAATATCAG 645
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TAAGTAAATACAGTAGAGAAGTACGAGAAGTGGGATTTAAAATAGAGGAATTAATATCAG 540
Query 646 AGAGCTTAGGTTTAGAAAAAGATTACATGAAGAAAGTGCTTGGTGAACAAGGTCAACACA 705
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAGCTTAGGCTTAGAAAAAGATTACATGAAGAAAGTGCTTGGTGAACAAGGTCAACACA 600
Query 706 TGGCAGTCAACTATTATCCTCCATGTCCTGAACCTGAGCTCACTTACGGTTTACCTGCTC 765
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 TGGCAGTCAATTATTATCCTCCATGTCCTGAACCTGAGCTCACTTATGGTTTACCTGCTC 660
Query 766 ATACCGACCCAAACGCCCTAACCATTCTTCTTCAAGACACTACTGTTTGCGGTCTCCAGA 825
| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 661 ACACCGACCCAAACGCCCTAACCATTCTTCTCCAAGACACTACCGTTTGTGGTCTCCAGA 720
Query 826 TCTTGATCGACGGTCAGTGGTTCGCCGTTAATCCACATCCTGATGCTTTTGTCATCAACA 885
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTTGATCGACGGCCAATGGTTCGCCGTTAATCCACATCCTGATGCTTTTGTCATCAACA 780
Query 886 TAGGTGACCAGTTACAGGCATTAAGTAATGGAGTATACAAAAGTGTTTGGCATCGCGCTG 945
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 TTGGTGACCAGTTACAGGCATTAAGTAATGGAGTATACAAAAGTGTTTGGCATCGAGCTG 840
Query 946 TAACAAACACAGAAAATCCGAGACTATCGGTCGCATCGTTTCTGTGCCCAGCTGACTGTG 1005
||||||| || ||||||||||||||||| | || |||||||| ||||||||||||||||
Sbjct 841 TAACAAATACCGAAAATCCGAGACTATCAATTGCGTCGTTTCTATGCCCAGCTGACTGTG 900
Query 1006 CTGTCATGAGCCCGGCCAAGCCCTTGTGGGAAGCTGAGGACGATGAAACGAAACCAGTCT 1065
|||||||||||||||||||||||||||||||||| |||||| | ||||| |||||| | |
Sbjct 901 CTGTCATGAGCCCGGCCAAGCCCTTGTGGGAAGCCGAGGACAACGAAACAAAACCAATTT 960
Query 1066 ACAAAGATTTCACTTATGCAGAGTATTACAAGAAGTTTTGGAGTAGGAATCTGGACCAAG 1125
||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 ACAGAGACTTCACTTATGCAGAGTACTACAAGAAGTTTTGGAGTAGGAATCTGGACCAAG 1020
Query 1126 AACATTGCCTCGAGAATTTTCTAAACAACTAAGATACATATAT 1168
||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1021 AACATTGCCTCGAGAATTTTCGAAACAACTAAGATACTTATAT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5