BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24550.1
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894358 jgi|Araly1|894358|Al_scaffold_0006_2354 2193 0.0
Ahg942009 jgi|Araly1|942009|scaffold_602553.1 516 2e-145
> Ahg894358 jgi|Araly1|894358|Al_scaffold_0006_2354
Length=1605
Score = 2193 bits (1187), Expect = 0.0
Identities = 1474/1613 (91%), Gaps = 18/1613 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATTAAGCTAATTGCACTAGTAATCACAATTTGTGTAGCATCATGGGATAGTGCA 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 1 ATGGCAATTAAGCTAATTGCACTAGTAATCACACTATGTGTAGCATCATGGGATACTGCA 60
Query 61 CAAGGAAGATCTTTAAGATTTTCTACGACTCCTCTAAATCGATATAGCTTTCCTCCTCAT 120
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 GAAGGAAGATCTTTAAGATTTTCTACAACTCCTCTAAATCGTTATAGCTTTCCTCCTCAT 120
Query 121 TTTGATTTTGGTGTTGCTTCTTCTGCTTATCAGTATGAAGGTGCAGTAGAAGAAGGAGGG 180
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTGATTTTGGTGTTGCCTCTTCCGCTTATCAGTATGAAGGTGCAGTAGAAGAAGGAGGG 180
Query 181 AGGAGTCCGAGTATATGGGACAATTTCACACATGCATTCCCAGAAAGGACAAACATGGAT 240
||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 181 AGGAGTCTAAGCATATGGGATAATTTCACACATGCATTTCCAGAAAGGACGAACATGGAC 240
Query 241 AATGGAGATGTTGCTGTAGACTTTTATCATCGTTATAAGGACGACATCAAACTAATAAAG 300
|||||||||||||| || || ||||| |||||||||||||| ||||||||| ||||||||
Sbjct 241 AATGGAGATGTTGCCGTTGATTTTTACCATCGTTATAAGGAAGACATCAAATTAATAAAG 300
Query 301 GAAATGAATATGGATAGTTTCAGATTTTCCCTGTCCTGGTCAAGAATACTACCAAGTGGA 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 301 GAAATGAATATGGATAGTTTCAGATTTTCCCTGTCCTGGTCAAGAATATTACCGAGTGGA 360
Query 361 AAATTAAGCGATGGGGTAAATAAAGAAGGTGTTCAATTCTACAAGAATCTTATAGATGAA 420
||| |||| |||||||| ||| |||| |||||||||||||||||||||||||| ||||||
Sbjct 361 AAAGTAAGTGATGGGGTCAATCAAGACGGTGTTCAATTCTACAAGAATCTTATTGATGAA 420
Query 421 CTTATCAAGAATGGTATCAAACCTTTTGTAACAATTTATCATTGGGATATTCCTCAAGCT 480
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CTTATCAAGAACGGTATAAAACCTTTTGTAACAATTTATCATTGGGATATCCCTCAAGCT 480
Query 481 CTTGATGACGAGTATGGTAGCTTTTTAAGTCCTCGAATCATAGATGATTTTAGAAACTTC 540
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 481 CTTGATGATGAGTATGGTAGCTTTTTAAGTCCTCGAATCATAGATGATTTTCGAAACTAC 540
Query 541 GCCAGATTTTGTTTCCAAGAGTTTGGAGACAAGGTCAGTATGTGGACAACCTTCAACGAG 600
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 541 GCCAGATTTTGTTTCCAAGAGTTTGGGGACAAGGTCAGTATGTGGACAACGTTCAACGAA 600
Query 601 CCATATGTTTATAGTGTTTCGGGTTATGACGCGGGCAATAAGGCAATTGGTCGATGTTCA 660
|||||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct 601 CCATATGTTTATAGCGTTTCTGGTTATGATGCGGGAAATAAGGCAATGGGTCGATGTTCC 660
Query 661 AAATGGGTAAACAGTTTGTGTATTGCTGGTGATTCGGGCACAGAACCTTATTTAGTCTCT 720
|||||||||||||||||||| || || |||||||||||||| || |||||||||||||||
Sbjct 661 AAATGGGTAAACAGTTTGTGCATAGCCGGTGATTCGGGCACGGAGCCTTATTTAGTCTCT 720
Query 721 CACAACCTTCTTCTTGCTCACGCTGCTGCCGTCGAAGAGTTCAGGAAATGTGACAAGATT 780
||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 721 CACCACCTTCTTCTTGCTCACGCTGCTGCTGTTGAAGAGTTCAGGAAATGTGATAAGATT 780
Query 781 TCACAAGATGCTAAGATAGGCATAGTGTTGTCCCCTTATTGGTTTGAGCCTTATGACATT 840
||| || || | || ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 781 TCAAAAAATTCCAAAATAGGCATAGTGTTGTCCCCTTATTGGTTCGAGCCATATGACATT 840
Query 841 GATTCCGAAT-CTGATAAAGAAGCAGTTGAACGAGCTCTTGTTTTCAATATTGGTTGGCA 899
| ||| ||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 841 GCTTCT-AATGCTGATAAAGAAGCTGTTGAAAGAGCTCTTGCTTTCAATATTGGTTGGCA 899
Query 900 TCTCAGCCCTTTAGTATTT--GGAGACTA-CCCTGAAACGATTAAGACAA-CAGCTGGAA 955
|||||||||| | | |||| |||||||| ||| || | || ||| ||| | ||| |||
Sbjct 900 TCTCAGCCCTCT-G-ATTTTCGGAGACTATCCC-GAGATAATAAAGGCAAGC-GCTAGAA 955
Query 956 ATAGATTGCCTTCTTTCACCAAAGAGCAATCTATGATG-TTACAAAATTCATTTGATTTT 1014
||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 956 ATAGACTGCCATCTTTCACCAAAGAGCAATCTATGATGGTTA-AAAATTCATTTGATTTT 1014
Query 1015 ATCGGAATAAATTACTACACGGCACGATTTGTCGCTCACGATCTTCACGTCGATCTTTCC 1074
|| || ||||||||||||| ||||| |||||||||||||||||| | |||||| ||||
Sbjct 1015 ATTGGTGTAAATTACTACACTGCACGGTTTGTCGCTCACGATCTTAATGTCGATATTTCA 1074
Query 1075 CGACCTCGCTTCACGACTGACCAACACCTCCAATACAAATTGACAAATCGTAGCGGCGAC 1134
| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1075 AGGCCTCGCTTCATGACCGACCAACACCTCCAATACAAATTGACAAATCGTAGCGGAGAC 1134
Query 1135 CAC-ATCTCATCAGAATCGGATGGGACAAAAATTCTCTGGTCATATCCGGAAGGCCTACG 1193
|| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1135 -ACCATCTCATTGGAATCGGATGGGACCAAAATTCTCTGGTCATATCCGGAAGGGCTACG 1193
Query 1194 AAAGCTTCTTAACTATATCAAAAATAAATATAACAATCCAACTATTTACATAACTGAAAA 1253
|||| ||||||| || |||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1194 AAAGATTCTTAATTACATCAAAAATAAATACAATAATCCAACTATTTACATAACAGAAAA 1253
Query 1254 CGGTTTCGATGACTACGAAAATGGATCAGTGACACGTGAAGAGATAATAGAAGACACAAA 1313
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1254 TGGTTTTGATGACTACGAAAATGGAACAGTGACACGTGAAGAGATAATAGAAGACACAAA 1313
Query 1314 GAGAATAGAGTACCACCAAAACCATCTTCAACAACTCCAGAAAGCGATCACTGAGGATGG 1373
||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1314 GAGAATAGAATACCACCAAAAACATCTTCAACAACTCCAGAAAGCGATCATTGAGGATGG 1373
Query 1374 GTGTAACGTGAAAGGCTATTTCACATGGTCATTGTTGGATAATTTTGAATGGGAACATGG 1433
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1374 GTGTAACGTGAAAGGCTATTTCACATGGTCGTTGTTGGATAATTTTGAATGGGAACATGG 1433
Query 1434 ATATGCAGTGAGATTTGGTTTGTACTACGTTGACTATAAAAATGGTCTATCACGACATGC 1493
|||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 1434 ATATGCTGTGAGATTTGGTCTGTACTACGTTGACTATAAAAATGGTCTAAAAAGACATGC 1493
Query 1494 TAAAAACTCAGCCA-AGTGGTTCAAACATTTCCTTCAGAGATCTGGAAAACCAATGCCCT 1552
|||||||||| ||| | |||||||| ||||| |||| |||||||||||||||||||||
Sbjct 1494 TAAAAACTCATCCATA-TGGTTCAAGCATTTTCTTCTGAGATCTGGAAAACCAATGCCGA 1552
Query 1553 TGGATCTGTTTAAGAGTGTCAAGA-ATTGGTGGTCTGCAATACCGATGATTTA 1604
||||||||||||| |||||||||| || |||||| || | ||| |||||||||
Sbjct 1553 TGGATCTGTTTAAAAGTGTCAAGAGAT-GGTGGTATGGATTACAGATGATTTA 1604
> Ahg942009 jgi|Araly1|942009|scaffold_602553.1
Length=401
Score = 516 bits (279), Expect = 2e-145
Identities = 331/356 (93%), Gaps = 3/356 (1%)
Strand=Plus/Plus
Query 1013 TTATCGGAATAAATTACTACACGGCAC-GATTTGTCGCTCACGATCTTCACGTCGATCTT 1071
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1 TTATCGGAATAAATTACTACATGGCACGGA-TTGTCGCTCACGATCTTCACGTCGATCTT 59
Query 1072 TCCCGACCTCGCTTCACGACTGACCAACACCTCCAATACAAATTGACAAATCGTAGCGGC 1131
| ||| ||||||||||| || |||||||| |||||||||| |||||||||||||||||||
Sbjct 60 TTCCGGCCTCGCTTCACAACCGACCAACATCTCCAATACAGATTGACAAATCGTAGCGGC 119
Query 1132 GACCACATCTCATCAGAATCGGATGGGACAAAAATTCTCTGGTCATATCCGGAAGGCCTA 1191
||| |||||||||||||||||||||| || |||||||||||||||||| |||||||| ||
Sbjct 120 GACAACATCTCATCAGAATCGGATGGAACCAAAATTCTCTGGTCATATACGGAAGGCTTA 179
Query 1192 CGAAAGCTTCTTAACTATATCAAAAATAAATATAACAATCCAACTATTTACATAACTGAA 1251
|||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CGAAAGCTTCTTAATTATATTAAAACTAAATATAACAATCCAACTATTTACATAACTGAA 239
Query 1252 AACGGTTTCGATGACTACGAAAATGGATCAGTGACACGTGAAGAGATAATAGAAGACACA 1311
|| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct 240 AATGGTTTCGATGACTACGAAGATGGAACAGTGACACGTGATGAGATAATAGAAGACACA 299
Query 1312 AAGAGAATAGAGTACCACCAAAACCATCTTCAACAACTCCAGAAAGCGATCACTGA 1367
||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||
Sbjct 300 AAGAGAATAAAGTACCACCAAAAACATCTTCGACAACTCCAGAAAGCGATCA-TGA 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60144496855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5