BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24560.1 Length=756 Score E Sequences producing significant alignments: (Bits) Value Ahg326746 jgi|Araly1|326746|fgenesh1_pm.C_scaffold_6001966 470 8e-132 Ahg942011 jgi|Araly1|942011|scaffold_602555.1 414 4e-115 > Ahg326746 jgi|Araly1|326746|fgenesh1_pm.C_scaffold_6001966 Length=744 Score = 470 bits (254), Expect = 8e-132 Identities = 407/475 (86%), Gaps = 33/475 (7%) Strand=Plus/Plus Query 1 ATGAATTTTCTTGATTTACCAGAGGAATGCATCGCCACCA-TGATTTCTTTCACCAGCCC 59 |||||||||||||||||||| || ||||||||| || || |||||||||||||||| | Sbjct 1 ATGAATTTTCTTGATTTACCGGAAGAATGCATCTCC-GCAGTGATTTCTTTCACCAG-TC 58 Query 60 CTTCGACGCATGCCGTATCTCTGCTGTCTCTAAATTGCTTCGC-TCCGCGGCGGATTCCA 118 || |||||| |||||||||||||||||||| |||||||| ||| | ||| | |||||| | Sbjct 59 CTACGACGCCTGCCGTATCTCTGCTGTCTCCAAATTGCTCCGCGT-CGCCGTGGATTCTA 117 Query 119 ATACCACTTGGGAGAGATTTC-TTCCATCAGATTATCGTATGTATATCGATAATTCTTTA 177 ||||| |||||||||||||| |||| ||||||| || || |||||||||||| |||||| Sbjct 118 ATACCGTTTGGGAGAGATTTCTTTCC-TCAGATTCTCTTACGTATATCGATAAATCTTTA 176 Query 178 TCTAGATTTTCCAACAAGCAGCTCTTCCTAC-GTTTTTGTGAATCCCCTCTTCTCATCGA 236 |||||||||||||| || ||| | ||||| | |||| || ||||| |||||||||||||| Sbjct 177 TCTAGATTTTCCAATAACCAGTTGTTCCT-CTGTTTCTGCGAATCTCCTCTTCTCATCGA 235 Query 237 GGATGGAAGAACGAGCTTTTGGATGGAAAAGAGAAGCGGGAAGAAATGTTGGATGTTATC 296 |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 236 CAATGGAAGAAC--GCTTTTGGATGGACAAGAGAAGCGCGAAGAAATGTTGGATGTTATC 293 Query 297 TGCAAGGAAACTAGATATTGTTTGGGTTGATAGTCCTGAATTCTGGATATGGGTTTCGAT 356 |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct 294 TGCAAGGAAACTAGATATCATTTGGGTTGATAGTCTTGAATTCTGGATATGGATTTCGAT 353 Query 357 TCCGGACTCGAGAT---TT---------------G----AGGAAGTTGCAGGGCTTCTAA 394 |||||||||||||| || | ||||||||||||||||||||| Sbjct 354 TCCGGACTCGAGATCAATTAATTTCATCTCAATTGTTCGAGGAAGTTGCAGGGCTTCTAA 413 Query 395 TGGTATGTTGGTTTGAAATCCGAGGTAAAATAAGCACATCCCTTCTCTCCAAAGC 449 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 414 TGGTATGTTGGTTCGAAATCCGAGGAAAAATAAGCACATCCCTTCTCTCCAAAGC 468 > Ahg942011 jgi|Araly1|942011|scaffold_602555.1 Length=322 Score = 414 bits (224), Expect = 4e-115 Identities = 290/322 (90%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 433 TCCCTTCTCTCCAAAGCCACTAAT-TACAGTGCTTACCTTGTTTTCAAAGAACAAGAAAT 491 |||||||||||||||||||| || || | |||||| |||||||||||||||||||||| Sbjct 1 TCCCTTCTCTCCAAAGCCAC-CATGTATGGAGCTTACATTGTTTTCAAAGAACAAGAAAT 59 Query 492 GGGATCCTTTGGATTTGAGTCTCTGCCTTTGGAGGTTAGCTTTCGTTCTACAAGAACTGA 551 |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| Sbjct 60 GGGATCCTTTGGATTTGAGTCTCTGCCTTTGGAGATGAGCTTTTGTTCTACAAGAACTGA 119 Query 552 AGTTTATAACAATAGAAGAGTTTTTCTTAAGTCA-GGAACACAAGAGTCTAGAGAAGATG 610 |||||||| |||||||||| |||||| | || ||||| |||| || ||||||||||| Sbjct 120 GGTTTATAATGATAGAAGAGTATTTCTTTTG-CAAGGAACGCAAGGGTGTAGAGAAGATG 178 Query 611 GGTGGTTGGAGATTGAACTTGGTGAATATTATGTTGGTTTTGATGATGAGGAGATCGAAA 670 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| Sbjct 179 GGTGGTTGGAGATTGAACTTGGTGAATATTATGTTGGTTCCGATGATGAGGAGCTTGAAA 238 Query 671 TGAGCGTATTGGAGACTAGAGAAGGCGGTTGGAAAGGCGGAATCATCGTTCAAGGGATCG 730 ||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||||| Sbjct 239 TGAGCATCTTGGAGACGAGAGAAGGCGGTTGGAAAGGCGGAATCATTGTGCAAGGGATCT 298 Query 731 AGATTAGGCCAAAAGAATTGTT 752 ||||||||||||||||| |||| Sbjct 299 AGATTAGGCCAAAAGAAGTGTT 320 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27867852327 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5