BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24560.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326746 jgi|Araly1|326746|fgenesh1_pm.C_scaffold_6001966 470 8e-132
Ahg942011 jgi|Araly1|942011|scaffold_602555.1 414 4e-115
> Ahg326746 jgi|Araly1|326746|fgenesh1_pm.C_scaffold_6001966
Length=744
Score = 470 bits (254), Expect = 8e-132
Identities = 407/475 (86%), Gaps = 33/475 (7%)
Strand=Plus/Plus
Query 1 ATGAATTTTCTTGATTTACCAGAGGAATGCATCGCCACCA-TGATTTCTTTCACCAGCCC 59
|||||||||||||||||||| || ||||||||| || || |||||||||||||||| |
Sbjct 1 ATGAATTTTCTTGATTTACCGGAAGAATGCATCTCC-GCAGTGATTTCTTTCACCAG-TC 58
Query 60 CTTCGACGCATGCCGTATCTCTGCTGTCTCTAAATTGCTTCGC-TCCGCGGCGGATTCCA 118
|| |||||| |||||||||||||||||||| |||||||| ||| | ||| | |||||| |
Sbjct 59 CTACGACGCCTGCCGTATCTCTGCTGTCTCCAAATTGCTCCGCGT-CGCCGTGGATTCTA 117
Query 119 ATACCACTTGGGAGAGATTTC-TTCCATCAGATTATCGTATGTATATCGATAATTCTTTA 177
||||| |||||||||||||| |||| ||||||| || || |||||||||||| ||||||
Sbjct 118 ATACCGTTTGGGAGAGATTTCTTTCC-TCAGATTCTCTTACGTATATCGATAAATCTTTA 176
Query 178 TCTAGATTTTCCAACAAGCAGCTCTTCCTAC-GTTTTTGTGAATCCCCTCTTCTCATCGA 236
|||||||||||||| || ||| | ||||| | |||| || ||||| ||||||||||||||
Sbjct 177 TCTAGATTTTCCAATAACCAGTTGTTCCT-CTGTTTCTGCGAATCTCCTCTTCTCATCGA 235
Query 237 GGATGGAAGAACGAGCTTTTGGATGGAAAAGAGAAGCGGGAAGAAATGTTGGATGTTATC 296
|||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 236 CAATGGAAGAAC--GCTTTTGGATGGACAAGAGAAGCGCGAAGAAATGTTGGATGTTATC 293
Query 297 TGCAAGGAAACTAGATATTGTTTGGGTTGATAGTCCTGAATTCTGGATATGGGTTTCGAT 356
|||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||
Sbjct 294 TGCAAGGAAACTAGATATCATTTGGGTTGATAGTCTTGAATTCTGGATATGGATTTCGAT 353
Query 357 TCCGGACTCGAGAT---TT---------------G----AGGAAGTTGCAGGGCTTCTAA 394
|||||||||||||| || | |||||||||||||||||||||
Sbjct 354 TCCGGACTCGAGATCAATTAATTTCATCTCAATTGTTCGAGGAAGTTGCAGGGCTTCTAA 413
Query 395 TGGTATGTTGGTTTGAAATCCGAGGTAAAATAAGCACATCCCTTCTCTCCAAAGC 449
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 414 TGGTATGTTGGTTCGAAATCCGAGGAAAAATAAGCACATCCCTTCTCTCCAAAGC 468
> Ahg942011 jgi|Araly1|942011|scaffold_602555.1
Length=322
Score = 414 bits (224), Expect = 4e-115
Identities = 290/322 (90%), Gaps = 4/322 (1%)
Strand=Plus/Plus
Query 433 TCCCTTCTCTCCAAAGCCACTAAT-TACAGTGCTTACCTTGTTTTCAAAGAACAAGAAAT 491
|||||||||||||||||||| || || | |||||| ||||||||||||||||||||||
Sbjct 1 TCCCTTCTCTCCAAAGCCAC-CATGTATGGAGCTTACATTGTTTTCAAAGAACAAGAAAT 59
Query 492 GGGATCCTTTGGATTTGAGTCTCTGCCTTTGGAGGTTAGCTTTCGTTCTACAAGAACTGA 551
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 60 GGGATCCTTTGGATTTGAGTCTCTGCCTTTGGAGATGAGCTTTTGTTCTACAAGAACTGA 119
Query 552 AGTTTATAACAATAGAAGAGTTTTTCTTAAGTCA-GGAACACAAGAGTCTAGAGAAGATG 610
|||||||| |||||||||| |||||| | || ||||| |||| || |||||||||||
Sbjct 120 GGTTTATAATGATAGAAGAGTATTTCTTTTG-CAAGGAACGCAAGGGTGTAGAGAAGATG 178
Query 611 GGTGGTTGGAGATTGAACTTGGTGAATATTATGTTGGTTTTGATGATGAGGAGATCGAAA 670
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 179 GGTGGTTGGAGATTGAACTTGGTGAATATTATGTTGGTTCCGATGATGAGGAGCTTGAAA 238
Query 671 TGAGCGTATTGGAGACTAGAGAAGGCGGTTGGAAAGGCGGAATCATCGTTCAAGGGATCG 730
||||| | |||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 239 TGAGCATCTTGGAGACGAGAGAAGGCGGTTGGAAAGGCGGAATCATTGTGCAAGGGATCT 298
Query 731 AGATTAGGCCAAAAGAATTGTT 752
||||||||||||||||| ||||
Sbjct 299 AGATTAGGCCAAAAGAAGTGTT 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5