BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24570.1

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942012 jgi|Araly1|942012|scaffold_602556.1                        375    1e-103


> Ahg942012 jgi|Araly1|942012|scaffold_602556.1
Length=307

 Score =  375 bits (203),  Expect = 1e-103
 Identities = 291/329 (88%), Gaps = 23/329 (7%)
 Strand=Plus/Plus

Query  12   TCCTGTCTTGCAAGCAAATTAAGATCATAAAAAGGTTTAGAGCTTTTCTAACAAACGTCA  71
            ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct  1    TCCTGTCTTGCAAGCAAATTAAGATCATACAAAGGTTTAGAGATTTTCTAACAAACGTCA  60

Query  72   AAGCAAATCATCATCGGAGCAATCTTCAAATCATCATGATAACAGTAGCCATCGCAGCCG  131
            ||||||||||||||  |||||||||||||||| |||||||||||||||||||||| || |
Sbjct  61   AAGCAAATCATCATTAGAGCAATCTTCAAATCGTCATGATAACAGTAGCCATCGCCGCTG  120

Query  132  AGTTGCTTGAAGAATATACGGCGGCGCTCACACGCATCACCGCCACACTCCTCCCTCCAC  191
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  121  AGTTGCTTGAAGAATACACGGCGGCGCTAACACGCATCACCGCCACACTCCTCCCTCCAC  180

Query  192  CACCTACAAGTCACCGTCGAAGTGTCCGAGCTCCTACTAGCGGCCGAGCTGACTCTTCCT  251
            |||| ||||||| |||||||||||||||||||   |||  |        |  |||| || 
Sbjct  181  CACCAACAAGTCGCCGTCGAAGTGTCCGAGCTG--ACT--CT-------T--CTCT-CC-  225

Query  252  TGCCTCGTAACGATAACAACTCATCATCAT-GCGCTCCAAATTACACCGCTTTTCTCTTA  310
              | |||||||||||||   |||||||| | ||||||||||||||||||||||||| |||
Sbjct  226  --C-TCGTAACGATAAC---TCATCATC-TCGCGCTCCAAATTACACCGCTTTTCTTTTA  278

Query  311  AATTTCTGAGTAtttttttAATAGACGAA  339
            |||||||||||||||||| ||||||||||
Sbjct  279  AATTTCTGAGTATTTTTTGAATAGACGAA  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16330592092


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5