BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24580.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489321 jgi|Araly1|489321|fgenesh2_kg.6__2455__AT5G24580.2 1703 0.0
> Ahg489321 jgi|Araly1|489321|fgenesh2_kg.6__2455__AT5G24580.2
Length=1181
Score = 1703 bits (922), Expect = 0.0
Identities = 1083/1158 (94%), Gaps = 21/1158 (2%)
Strand=Plus/Plus
Query 2 CTTTAATTATTCATCAATAATTCTAATT-CTCCTTCGT-TTTTTAATATACTAGTGTTTC 59
||||||||||||||||||||||| ||| ||||||| | ||||| |||||||||||||||
Sbjct 27 CTTTAATTATTCATCAATAATTC-CATTCCTCCTTCATCTTTTT-ATATACTAGTGTTTC 84
Query 60 ATATAAATACTCGCTCTCTCTACTCATTCCCTCCATAACATATAT-TTCTTCTTCGTTTC 118
||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||
Sbjct 85 ATATAAATACTCGCTCTCTCTACCCATTCCCTCCATAACATATCTCTT-TTCTTCGTTTC 143
Query 119 A--T-T---CATAATCGTCTTATAACCACAGATTCTAAAACATGGGAGAAGAAGTAAAAC 172
| | | ||| |||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 144 ATTTGTAACCAT-ATCGTCGTGTAACCACAGATTCTAAAACATGGGTGAAGAAGTAAAAC 202
Query 173 CAGAGGCAAAGGAGGCAGCCTCTGCTCCACAGGCCGTCCCCGCTgaggaggaggagaaga 232
| | ||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||
Sbjct 203 C--A-GCAAAGGAGGCAGTCTCTGCTCCAGAGGCCGTCCCCGCGGAGGAGAAGGAGAAGA 259
Query 233 agaaagatgtagcggaggagaagaaagtggcggctgaggaggagaaACCAAAGGAGGAAG 292
|||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 260 AGAAAGATCTGGCGGAGGAGAAGAAAGTGGCGGCTGAGGAGGAGAAACCAACGGAGGAGG 319
Query 293 AGGAGCCGCAACCACCACCACCGCCTCCACCCTTCATACTCTACGTCGACTTGCATTGTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AGGAGCCGCAACCACCACCACCGCCTCCACCCTTCATACTCTACGTCGACTTGCATTGTG 379
Query 353 TTGGATGCGCTAAGAAGATTGAAAGATCTATTCTAAAAATTAGAGGTGTGGAAGAAGTGG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTGGATGCGCTAAGAAGATTGAAAGATCTATTCTAAAAATTAGAGGTGTGGAAGAAGTGG 439
Query 413 TGATGGATATGAATGAGAACCAAGTGACGATAAAGGGAGTGTTGGATCCGCAAGCAGTGT 472
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 440 TGATGGATATGAATGAGAACCAAGTGACGATAAAAGGAGTGTTGGATCCGCAGGCAGTGT 499
Query 473 GCAACAAAATCAAGAAGAAGACTAAAAGAATGGCCAAAGTCCTCTCGCCGCTTCCGGCAG 532
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 500 GCAACAAAATCAAGAAGAAGACTAAAAGAATGGCCAAAGTCCTATCTCCGCTTCCGGCAG 559
Query 533 CTGAGGGAGAGCCTCTGCCACCAATCATAACCTCTCAGGTCTCCGGCGGCCTCACCACCG 592
| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 560 CCGAGGGAGAGCCTCTCCCACCGATCATAACCTCTCAGGTCTCCGGCGGTCTCACCACCG 619
Query 593 TCGAGCTCAGCGTTAACATGCACTGCCAAGCTTGTGCTGACCAGCTCAAGAAGAAGATTC 652
||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 620 TCGAGCTCAACGTCAACATGCACTGCGAAGCTTGTGCTGACCAGCTCAAGAAGAAGATTC 679
Query 653 TCAAAATGAGAGGGGTCCAAACAACTGTGACAGAGCACACCACGGGAAAAGTAATAGTGA 712
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 680 TCAAAATGAGAGGGGTCCAAACAACTGTGACGGAGCACACCACCGGAAAAGTAATAGTAA 739
Query 713 CTGGGACAATGGACGCTGAGAAGCTTGTGGATTACGTCTACCGTCGGACCAAAAAGCAAG 772
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CTGGAACAATGGACGCCGAGAAGCTTGTGGATTACGTCTACCGTCGGACCAAAAAGCAAG 799
Query 773 CCCGAATCGTACCCCAACCTGACCCGGAACCTGAAGCCCCCGCGGCCGCGCAGGAAGAAA 832
||||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||| |
Sbjct 800 CCCGAATCGTACCCCAACCTGACCCGGAACCTGAAAACCC-G-G-CCGCGGAGGAAGAGA 856
Query 833 AGAAGGAGGAGAGCGGTGAAGGCAATGAAAAACCACCagagaccggagaggaaaaggaag 892
|||||||||||| ||||| ||| |||||||||| ||||| ||||||||||| |||||||
Sbjct 857 AGAAGGAGGAGAATGGTGACGGCGATGAAAAACCGCCAGAAACCGGAGAGGATAAGGAAG 916
Query 893 aagagaagaagaaggagggagaggaaaatggagaggaaggtggtggagaagaggcggcgg 952
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 917 AAGAGAAGAAGAAGGAGGGAGAGGAAAATAGAGAGGAAGGTGGTGGAGAAGAGGCGGCGG 976
Query 953 ctacggaggaagagagaCGAGACAATGAAATGACGGCTATGGCCCAAGAAGAAGGGATGA 1012
||||||||||||||||| ||||| |||||||| |||| |||| ||| ||||||||||
Sbjct 977 CTACGGAGGAAGAGAGAAGAGACGATGAAATGGCGGCGATGGTGGAAGTGGAAGGGATGA 1036
Query 1013 AGAGGATGATGTATTACTATCAACCTTCATACGTCATAGAGAGGATTCCTCCGCCGCAGC 1072
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGAGGATGATGTATTACTATCAGCCTTCATACGTCATAGAGAGGATTCCTCCGCCGCAGC 1096
Query 1073 TTTTTAGCGACGAGAACCCTAATGCTTGTTGCATTTCTTAATTAAATTTGGTTT-CGTAT 1131
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1097 TTTTTAGCGACGAGAACCCTAATGCTTGTTGCATTTCTTAATTAA-TTTGGTTTTCGTAT 1155
Query 1132 ATGTCTATGGAAAATATA 1149
|||||| |||||||||||
Sbjct 1156 ATGTCTTTGGAAAATATA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5