BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24590.2
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326748 jgi|Araly1|326748|fgenesh1_pm.C_scaffold_6001968 1157 0.0
> Ahg326748 jgi|Araly1|326748|fgenesh1_pm.C_scaffold_6001968
Length=1386
Score = 1157 bits (626), Expect = 0.0
Identities = 864/972 (89%), Gaps = 43/972 (4%)
Strand=Plus/Plus
Query 211 ATGAAAGAAGACATGGAAGTACTATCGCTCGCTTCACTACCGGTTGGGTTCAGATTTAGT 270
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 1 ATGAAAGAAGACATGGAAGTATTATCGCTCGCTTCACTACCGGTAGGGTTCAGATTCAGT 60
Query 271 CCAACGGACGAAGAGTTAGTCCGGTACTATCTCCGGCTCAAGATCAACGGTCACGATAAC 330
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 61 CCAACAGACGAAGAGTTAGTCCGTTACTATCTCCGACTCAAGATCAACGGTCACGATGAC 120
Query 331 GACGTTAGAGTAATTCGTGAGATCGATATCTGCAAATGGGAGCCTTGGGATTTGCCTGAT 390
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GACGTTAGAGTAATCCGTGAGATCGATATCTGCAAATGGGAGCCTTGGGATTTACCTGAT 180
Query 391 TTTTCTGTGGTGAAGACAACAGACTCAGAGTGGCTCTTCTTTTGTCCTTTGGACCGGAAA 450
||||||||||||||||||| |||| |||||||||||||||||||||| || ||||| ||
Sbjct 181 TTTTCTGTGGTGAAGACAATAGACGCAGAGTGGCTCTTCTTTTGTCCATTAGACCGCAAG 240
Query 451 TATCCGAGTGGAAGTCGAATGAATAGAGCTACTGTGGCTGGATACTGGAAGGCGACGGGA 510
||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 241 TATCCGAGTGGAAGTAGGATGAATCGAGCTACTGTGGCTGGTTACTGGAAGGCGACGGGA 300
Query 511 AAAGACCGTAAGATCAAATCAGGAAAGACTAAGATTATAGGTGTTAAGAGGACTCTAGTG 570
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGATCGTAAGATCAAATCAGGAAAGACTAAGATTATAGGTGTTAAGAGGACTCTAGTC 360
Query 571 TTTTATACAGGTCGTGCTCCTAAAGGGACACGAACTTGTTGGATTATGCATGAGTATCGT 630
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TTCTATACAGGTCGTGCTCCTAAAGGGACACGAACTTGTTGGATTATGCATGAGTACCGC 420
Query 631 GCTACTGAGAAGGATCTTGATGGAACAAAGTCTGGCCAGAATCCGTTTGTTGTTTGTAAG 690
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 ACTACTGAGAAGGATCTTGATGGAACAAAGTCTGGCCAGAATCCTTTTGTTGTTTGTAAG 480
Query 691 TTGTTTAAGAAGCAAGATATTGTGAACGGAGCTGCTGAACCAGAAGAGTCAAAGTCATGT 750
||||||||||||||||| |||||||| |||||||| | | ||| |||| |||||||||
Sbjct 481 TTGTTTAAGAAGCAAGACATTGTGAATGGAGCTGCGG--C-AGAGGAGTTGAAGTCATGT 537
Query 751 GAAGTTGAACCAGCGGTATCGTCTCCAACTGTTGTGGA-----------C-GAGGTTGAA 798
||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 538 GAAGTTGAACCAGCGGTCTCGTCTCCAACTGTTGTGGATGAGATGAAATCTGAGGTTGAA 597
Query 799 ATGTCTGAGGTATCTCCTGTTTTCCCTAAAACAGAAGAGACTAATCCTTGTGACGTCGCA 858
||||||||||||||||| ||||| || ||| ||| | | | ||||||||||||
Sbjct 598 ATGTCTGAGGTATCTCCGGTTTTAG--AAGACACAAG-G-C----C-TTGTGACGTCGCT 648
Query 859 GAGTCTTCTCTTGTAATCCCCAGCGAATGTCGTAGTGGATACTCTGTCCCTGAGGTTACA 918
|| |||||||||||| || |||||| ||||||||| | | |||||| |||||||||||||
Sbjct 649 GAATCTTCTCTTGTAGTCTCCAGCGGATGTCGTAGCGAAAACTCTGCCCCTGAGGTTACA 708
Query 919 ACCACCGGGCTTGACGATATCGATTGGCTCTCGTTTATGGAGTTTGATTCCCCGAA---G 975
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 709 ACCACCGGGCTTGACGATATCGATTGGCTCTCATTTATGGAGTTTGATTCCGTGAATCAG 768
Query 976 ---CTGTTCTCTCCGTTGCACT-CTCAGGTGCAATCTGAGCTCGGTTCCTCTTTCAATGG 1031
|||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 769 AATCTGTTCTCTCCGTTGC-CTTCTCAGGTGCAATCTGAGCTTTGTTCCTCTTTCAATGG 827
Query 1032 CTTACAATCTG-AGTCTAGTGAATTGTTCAAAAACCACAATGAGGATTACATTCAGACTC 1090
|| ||||||| | | || || ||||||| ||||||| ||||||||||||
Sbjct 828 TTTTCAATCTGGAA-CAAGCCAACTGTTCAA---------TGAGGATCACATTCAGACTC 877
Query 1091 AGTACGGTACAAATGATGCGGATGAATATATGTCCAAGTTCTTGGATTCTTTTCTTGACA 1150
|||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 878 AGTATGGTACAAATGATGCCGATGAATATATGTCCAAGTTCTTGGATTCTCTTCTTGAGA 937
Query 1151 TTCCCTATGAGC 1162
| ||||||||||
Sbjct 938 TACCCTATGAGC 949
Score = 579 bits (313), Expect = 3e-164
Identities = 378/409 (92%), Gaps = 6/409 (1%)
Strand=Plus/Plus
Query 1161 GCCAGAACAGATCCCATATGAGCCACAGAATCTTAGCTCATGCAACAAGATCAATGATG- 1219
||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 981 GCCAGAACACATCACATACGAGCCACAGAATCTTAGCACATGCAACAAGATCAATGATGT 1040
Query 1220 AATCTAAGAGAGGAATTAAGATTAGAGCTCGACGAGCACAAGCCCCGGGTTGTGCTGAGC 1279
|| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 AA-CTGAGACAGGAATTAAGATTAGAGCTCGACGAGCACAAGCCCCGGGTTGTGCTGAGC 1099
Query 1280 AGTTTGTAATGCAGGGCGATGCCTCAAGAAGGCTGCGTCTTCAGGTTAACCTTAACAGCC 1339
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1100 AGTTTGTAATGCAAGGTGATGCCTCAAGAAGGTTGCGTCTTCAGGTTAACCTTAACACCC 1159
Query 1340 ACAAGTCAGAAACTGACAGTACACAACTTCAATTTATCAAGAAAGAGGTTAAGGACACAA 1399
||||||||||||| |||||||||||||| |||| |||||| ||||| |||||||||||||
Sbjct 1160 ACAAGTCAGAAACCGACAGTACACAACTCCAATGTATCAAAAAAGATGTTAAGGACACAA 1219
Query 1400 CAACGGAAACTAT-GACGAAAGGATGTGGAAATTTCACAAGATCAAAGAGCAGGACTAGT 1458
||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1220 CAACGGAAACTATAG-CGAAAGGATGTGGAAATTTCACCAGATCAAAAAGCAGGACTAGT 1278
Query 1459 TTCATATTCAAGAAAATTGCAGCCATGGGATGTTCATACAGAGGGCTTTTCAGAGTC-GG 1517
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| | ||
Sbjct 1279 TTCATATTCAAGAAAATTGCAGCTATGGGATGTTCATACAGAGGGTTTTTTAGAG-CAGG 1337
Query 1518 TGTGGTAGCGGTTGTGTGTGTGATGTCGGTCTGCAGTCTAGTCGCATAA 1566
|||||||||| ||||| |||||||||||| |||||||| |||||||||
Sbjct 1338 CGTGGTAGCGGCTGTGTTTGTGATGTCGGTTTGCAGTCTGGTCGCATAA 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5