BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24600.1
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942017 jgi|Araly1|942017|scaffold_602561.1 1188 0.0
> Ahg942017 jgi|Araly1|942017|scaffold_602561.1
Length=783
Score = 1188 bits (643), Expect = 0.0
Identities = 733/776 (94%), Gaps = 7/776 (1%)
Strand=Plus/Plus
Query 118 ATC-AATCTTTGATCTAAGAAGATGAAGCGTGAGTATTTAGATTATACACTTGTGCCTTT 176
||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATCAAATCTTTGATCTAAGATGATGAAGCGTGAGTATTTAGATTACACACTTGTGCCTTT 60
Query 177 AGGGCTTGCTTTGATGGTCTTTTATCATCTATGGCTTCTCTACCGTATCATCCACCGTCC 236
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 61 AGGGCTTGCTTTGATGGTGTTTTATCATCTTTGGCTTCTCTACCGTATCATTCACCGTCC 120
Query 237 TTCTTCGACTGTTGTTGGCCTTAACGCCTTCAATCGCCGCCTTTGGGTCCAAGCCATGAT 296
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCTTCGACTGTCGTTGGCCTCAACGCCTTCAATCGCCGCCTTTGGGTCCAAGCCATGAT 180
Query 297 GGAGGACTCATCCAAAAACGGCGTTTTAGCGGTTCAAACGCTAAGGAACAACATAATGGC 356
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGGACTCATCAAAAAATGGCGTTTTAGCGGTTCAAACGCTAAGGAACAACATAATGGC 240
Query 357 ATCAACTCTATTAGCATCAACCGCAATAATGTTATGTTCACTAATCGCGGTACTAATGAC 416
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GTCAACTCTATTGGCATCAACCGCAATAATGTTGTGTTCACTAATCGCGGTACTAATGAC 300
Query 417 TAGCGCTACAGGAGAGCGATCAGTCTGGTTTGTGTTTGGAGACAAAAGCGACCGAGCCTT 476
||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 301 AAGCGCCACAGGAGAGCGATCTGTCTGGTTTGTGTTTGGTGACAAAAGTGACCGAGCCTT 360
Query 477 CTCGCTCAAGTTCTTCGCAATCCTCGTGTGTTTCCTAGTCGCGTTTCTCCTCAATGTCCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 CTCGCTCAAGTTCTTCGCAATCCTCGTGTGTTTCCTAGTCGCGTTTCTCCTCAATGTGCA 420
Query 537 ATCAATTCGTTATTACAGCCATGCAAGCATCCTTATCAATGTCCCCTTTAAACAGCTCAT 596
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 421 ATCAATTCGTTATTACAGCCATGCTAGCATCCTCATCAATGTCCCCTTTAAACAGCTGAT 480
Query 597 GGCTGTTTCTTCAGGTGGTCGTGGTAATGGTAGTCTTATGATAAACCAAGATTATGTGGC 656
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 GGCTGTTTCTTCAGGCGGTCGTGGTAACGGTAGTCTTATGATAAACCAAGATTATGTGGC 540
Query 657 TGCAACGGTTAACCGTGGGAGTTACTTCTGGTCGTTAGGACTACGAGCGTTCTACTTCTC 716
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 541 TGCAACGGTTAACCGTGGGAGTTACTTCTGGTCGTTAGGACTAAGAGCATTCTACTTCTC 600
Query 717 CTCGCCTTTATTCCTATGGATCTTTGGTCCCATCCCAATGTTCATAACTTGTTGCGTTCT 776
|||||||| ||||| |||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct 601 ATCGCCTTTGTTCCTTTGGATCTTCGGTCCCATCCCCATGTTCATCACTTGTTGTGTTCT 660
Query 777 TGTTTGTTCGTTGTACTTCCTTGATTTAACGTTTGACTCGATGAAATGTAGCGTTGGAGC 836
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTTTGTTCGTTGTACTTTCTTGATTTAACGTTTGACTCGATGAAATGTAGCGTTGGAGC 720
Query 837 CGCAGACGCGGAGGAGCCCGAGATTAGAAGCTTAGCTCAGAATGTTTAGTAGtttt 892
|||||||||||||||||||||| | ||||||||| | | ||||||||||||||
Sbjct 721 CGCAGACGCGGAGGAGCCCGAGGTCAGAAGCTTA----A-A-TGTTTAGTAGTTTT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38923498257
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5