BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24610.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942018 jgi|Araly1|942018|scaffold_602562.1 695 0.0
> Ahg942018 jgi|Araly1|942018|scaffold_602562.1
Length=490
Score = 695 bits (376), Expect = 0.0
Identities = 457/493 (93%), Gaps = 18/493 (4%)
Strand=Plus/Plus
Query 107 TCAGA-TCACAGGAATAAGATGGAGGTATTTGGAAAATCTCCCATGGTTGTTACATCTGC 165
||||| ||| | ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 3 TCAGATTCA-AAGAATAAGATGGAGGTATTTGGAAAATCTCCCAT-G--GTTACATCTGC 58
Query 166 CAATGTTATTTACTTGTCTGCAATTCTGGGTCGCGATTGCGATGG--------A----CA 213
||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 59 CAATGTTATTTACTTGTCTGCAATTCTGGGTCGCGATTGCGATGGACCCAACCAGTCTCA 118
Query 214 CAAATGTGATTGGAAATGTGAGAATGAAAATGTTTGTGGGAATATGTATCGCTGCAAACT 273
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 119 CAAATGTGATTGGAAATGTGAGAATGAAATTGTTTGTGGGAATATGTATCGCTGCAAACT 178
Query 274 AACTGGACTAACTCATGTCTGCGACAAGAACTGTAACCAGCGGATTCTCTATGATAACCA 333
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 AACTGGGCTGACTCATGTCTGCGACAAGAACTGTAATCAGCGGATTCTCTATGATAACCA 238
Query 334 TAGCTCTTTGTGCCGAGCCAGTGGGAGGATTTTCCCTCTCTCGTCCGTCGAGGAGCAGGC 393
||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||
Sbjct 239 TAGCTCTTTGTGCCGAGCCAGCGGGAGGATTTTCCCTCTCTCATCGGTTGAGGAGCAGGC 298
Query 394 GGTTAAAGGTGTTCGGAGGAAGCTTGACGCCGCTGAGAGTCATCCTTCTGAGAGCTGTTC 453
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 299 GGTTAAAGGGGTTCGGAGGAAGCTTGACGCTGCTGAGAGTCATCCTTCTGAGAGTTGTTC 358
Query 454 GTTTAAGCGTCGTCGTCGTGATGCTCAGTTCCATGCTTCTCCTTTCGAGAGGTCTTTTAC 513
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 359 GTTTAAGCGTCGTCGTCGTGATGCTCAGTTTCACGCTTCTCCTTTCGAGAGGTCTTTTAC 418
Query 514 TGCTGTGAGCCCTATCTGCAGCCCGGCTGGAGACGGAATGGAGTTGGTTTAGATTCCATG 573
|||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 419 TGCTGTGAGCCCCATCTGCAGCCCAGCTGGAGACGGAATGGAGTTGATTTAGAT-CCATG 477
Query 574 TTGATCTCCGCAA 586
||||||||| |||
Sbjct 478 TTGATCTCCTCAA 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5