BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24620.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489325 jgi|Araly1|489325|fgenesh2_kg.6__2459__AT5G24620.1 1410 0.0
> Ahg489325 jgi|Araly1|489325|fgenesh2_kg.6__2459__AT5G24620.1
Length=1438
Score = 1410 bits (763), Expect = 0.0
Identities = 926/1005 (92%), Gaps = 9/1005 (1%)
Strand=Plus/Plus
Query 135 AAACGTTTATACGATAATGGGAAGATCACCAATGGTTCCTATGGCTGTTCTTGTTTATGT 194
|||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 87 AAACGTTTTTACCATAATGGGAAGATCACCAATGGTTCCCATGGCTGTTCTTGTTTATGT 146
Query 195 TTCTCTACTGTTCTCTGTTTCTTATTCCTCCACGTTCGTCATCACAAATAACTGTCCCTT 254
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 147 TTCTCTACTGTTCTCTGTTTCTTATTCCTCAACGTTCGTCATCACAAATAACTGTCCTTT 206
Query 255 TACTATATGGCCTGGAACTCTTGCAGGCTCTGGCACCCAGCCACTACCCACCACAGGGTT 314
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 207 TACTATATGGCCCGGAACTCTTGCAGGCTCTGGCACCCAGCCATTACCCACCACAGGGTT 266
Query 315 CAGGCTTGATGTGGGACAGTCTGTT-AGAATTCCCACGGCTCTAGGCTGGTCAGGTCGTA 373
||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 267 CAGGCTTGATGTGGGACAGTCTGTTAAG-ATTCCCTCGGCTCTAGGCTGGTCAGGTCGTA 325
Query 374 TTTGGGCTAGGACTGGCTGCAACTTTGATGCTAACGGCGCGGGAAAATGTATGACTGGAG 433
| ||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 326 TATGGGCAAGGACAGGCTGCAACTTTGATGCCACCGGCGCGGGAAAATGTATGACTGGAG 385
Query 434 ACTGCGGCGGAAAGCTGGAGTGTGCTGGTAATGGCGCTGCTCCGCCGACATCTCTTTTCG 493
|||| ||||| ||||| ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct 386 ACTGTGGCGGGAAGCTTGAGTGCGCCGGTAATGGTGCTGCTCCGCCGACATCACTTTTCG 445
Query 494 AGATCACACTCGGTCACGGTTCTGATGACAAAGATTTCTATGATGTCAGTCTCGTTGATG 553
|||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 446 AGATCACACTCGGTCATGGTGCTGATGACAAAGATTTCTACGATGTGAGTCTCGTTGATG 505
Query 554 GGTATAACCTTCCCATAGTTGCTCTCCCGACGGGTGGTGGACTGGTTGGCGCTTGTAATG 613
||||||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||
Sbjct 506 GGTATAACCTTCCCATAGTTGCTCTTCCGACCGGTGGTGGACTGATTGGAGCTTGTAATG 565
Query 614 CTACAGGATGTGTTGCTGATATCAATATTAGCTGTCCAAAGGAGCTTCAAGTGATGGGAG 673
||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||
Sbjct 566 CTACAGGATGTGTTGCTGATATCAACATAAGCTGTCCAAAGGAGCTTCAAGTGGTAGGAG 625
Query 674 AGGAAGAGGCTGAAAGAGGAGGGGTTGTTGCATGCAAGAGCGCTTGTGAGGCCTTTGGGT 733
|||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 626 AGGAAGAGGC--AGAGA-GAGGAGTTGTTGCATGCAAGAGCGCTTGTGAGGCCTTTGGGT 682
Query 734 TGGACCAGTACTGTTGCAGCGGTCAGTTTGCTAACCCGACCACATGCCGACCGTCTTTAT 793
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 683 TGGACCAGTACTGTTGCAGCGGTCAGTTTGCTAACCCGACCACATGCCGACCGTCTTTTT 742
Query 794 ACTCTTCCATCTTCAAGAGAGCTTGTCCCAGAGCTTATAGCTATGCCTTCGATGATGGAA 853
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 743 ACTCTTCCATCTTCAAGAGAGCTTGTCCCAGAGCTTATAGCTATGCATTTGATGATGGAA 802
Query 854 CCAGTACTTTCACCTGCAAGGCTTCTGAATATGCAATTATCTTCTGCCCTGGCAGGGTAA 913
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 803 CCAGTACTTTCACTTGCAAGGCTTCTGAATATGCCATTATCTTCTGCCCTGGCAGGGTAA 862
Query 914 AAAGACCAGACAGTCTGAACTCGGATCCTCCCAGCCCACCTCAGAATCAGTTAGGGCAAC 973
||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 863 AAAGACCGGACAGTCAGAGCTCGGATCCTCCCAGCCCACCTCAGAATCAGTTCGGGCAAC 922
Query 974 CTATGGCTCCCCCAACTCAAAATCAGTATGGTCAACCTATGGCTCCTGC-ACCTCAGTAT 1032
|||||||||| ||| |||| |||||||| |||| ||||||||||| | ||| || ||
Sbjct 923 CTATGGCTCCTCCACCTCAGAATCAGTACCGTCAGCCTATGGCTCCACCGACC-CAAAAT 981
Query 1033 CAGTACGGTCAACCTATGGCTCCACCGACTCAAAATCAGTATGGTCAACCTCTGGCTCCT 1092
| ||| ||||||||||||||||| || ||||| ||||| || ||||||| |||||||
Sbjct 982 CCGTATGGTCAACCTATGGCTCCTCCCACTCAGAATCAATACAATCAACCTATGGCTCCA 1041
Query 1093 CCGACTCAAAATCAATACGATCAACCTCTGGCTCCTC-CGACTCA 1136
|||||||| ||||| |||| || |||| ||| ||||| | |||||
Sbjct 1042 CCGACTCAGAATCAGTACGGTCCACCTATGGTTCCTCTC-ACTCA 1085
Score = 592 bits (320), Expect = 3e-168
Identities = 484/560 (86%), Gaps = 23/560 (4%)
Strand=Plus/Plus
Query 984 CCCAACTCAAAATCAGTAT-GGTCAACCTATGGCTCCTGCACCTCAGTATCAGTACGGTC 1042
|||| |||| ||||||| | || ||||||||||||||| |||||||| |||||||| |||
Sbjct 897 CCCACCTCAGAATCAGT-TCGGGCAACCTATGGCTCCTCCACCTCAGAATCAGTACCGTC 955
Query 1043 AACCTATGGCTCCACCGACTCAAAATCAGTATGGTCAACCTCTGGCTCCTCCGACTCAAA 1102
| ||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||| |
Sbjct 956 AGCCTATGGCTCCACCGACCCAAAATCCGTATGGTCAACCTATGGCTCCTCCCACTCAGA 1015
Query 1103 ATCAATACGATCAACCTCTGGCTCCTCCGACTCAAAATCAATATGGTCAACCTATGGCTC 1162
|||||||| |||||||| ||||||| |||||||| ||||| || |||| |||||||| ||
Sbjct 1016 ATCAATACAATCAACCTATGGCTCCACCGACTCAGAATCAGTACGGTCCACCTATGGTTC 1075
Query 1163 CAC-CAACTCCGCCCCCACCCGGACCAAACGAGGATTCAATGACTCCCCCACCTCAGAAT 1221
| | | |||| | |||||| |||||||||| ||| |||||| |||||||||||||||||
Sbjct 1076 CTCTC-ACTCAGAACCCACCTGGACCAAACGGGGAATCAATGGCTCCCCCACCTCAGAAT 1134
Query 1222 CAGAATGGGGATGGGCAGTTCATGCCTCCTCCCACTTTGGACCAAGATCCAAACGACCAG 1281
|| || | | |||||||||||||||||||||||||| || |||||| ||||||||||| |
Sbjct 1135 CAAAACGAGAATGGGCAGTTCATGCCTCCTCCCACTGTGAACCAAGTTCCAAACGACCGG 1194
Query 1282 TATATGAATCCCCCAATTCAGGATCAGAGTCAAAGAGAGACTCAATCTTCATCCGATCTT 1341
||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct 1195 TATATGAATCCCCCAATTCAGGATCAGAGTCAA--------TC---CT-CATCCAATATT 1242
Query 1342 CTTCGACCTTACCCTGTCTTGTTGCTTCTTGGCTTTAGTCTAACTGCTTTGAGGCAATCT 1401
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 1243 CTTCGACCTTACCCTGTCTTCTTGCTTCTTGGCTTCAGTCTAACTGCTTTGAGACAATCA 1302
Query 1402 GGCACGACATGAAACATAATCATTCTAC-TTTTTAATT-AGAAATGCTACATAA-CTGTG 1458
||||||||||||| ||| |||||||| | |||||| | |||| || ||||||| | |||
Sbjct 1303 GGCACGACATGAATCATCATCATTCTTCCTTTTTA-TCGAGAATTGATACATAAAC-GTG 1360
Query 1459 TAGAGGAATCAAACAGACCATGTTTAATGTCTTCTCAGAGATTTTTTATACTCCAATAAT 1518
| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 1361 TGGAGGAATCAGACAGACCATGTTTAATGTCTTCTCAGAGATTTT--ATACTCCATTCAT 1418
Query 1519 CAATGTCCTTAGATTTACCT 1538
||| ||||||||||||||||
Sbjct 1419 CAAAGTCCTTAGATTTACCT 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5