BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24630.6
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894371 jgi|Araly1|894371|Al_scaffold_0006_2367 1046 0.0
> Ahg894371 jgi|Araly1|894371|Al_scaffold_0006_2367
Length=1479
Score = 1046 bits (566), Expect = 0.0
Identities = 803/907 (89%), Gaps = 57/907 (6%)
Strand=Plus/Plus
Query 466 ATGATAGTCCTTATAGGGAATCTGAAGTCATTTCGTCTCTTCCTTTGCCTGATGATGACG 525
|||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||
Sbjct 176 ATGATAGTCCTTATAGAGAATCTGAAGCCGTTTCGTCTCTTCCTTTGCCTGATGATGACG 235
Query 526 GTGACG-----AC-A---TTGTG---G-TTCT-T-GAG--AC-AGAATCTGTGGAG-T-- 564
|||||| || | ||| | | ||| | ||| | ||||||||| ||| |
Sbjct 236 GTGACGACACCACGATTCTTGAGAAAGAATCTGTGGAGTCTCAAGAATCTGTCGAGTTAC 295
Query 565 TACTGACTAGGAAGAATTCCGAAACGAAGGTTGTGACGAAGCAAGTGAGTATCGAGCAGG 624
||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 296 TACTGTCTAGGAAGAATTCCGAAACGAATCTTGTGATGAAGCAAGTGAGTATCGAGCAGG 355
Query 625 TGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTGAAGATTCGTGTGCAGGGA 684
|||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 356 TGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTG-A-A-------G--GGG- 403
Query 685 AGGAGAATGGAAACAACGTTGACT-GTGAAAAACTCTCTAGCAAGCATAAGGATGCTCAA 743
|| ||||||| ||||||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct 404 AGCAGAATGGGAACAACGTTGA-TGGGGAAAAACTCTCTACCAAGCATAAGGATGCTCAA 462
Query 744 GGAGGAGCTGATTCTGTATGGCTTGTCTCATCTGATTCTGAGCCAT-C-C---T-CTCCT 797
||||||| ||||||||||||||| ||||||||||||||||| |||| | | | ||||
Sbjct 463 GGAGGAGATGATTCTGTATGGCTGGTCTCATCTGATTCTGAACCATCCTCTAGTGCTCCG 522
Query 798 ATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGCGGATTTTGTTCTTGAAGCTACA 857
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 523 ATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGAGGATTTTGTTCTTGATGCTACA 582
Query 858 GAGGAAGAACCAGCAGTTAAGACAGTTCGaaaggaaaaatctccaaaaacaaagtcaaaa 917
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 583 GAGGAAGAACCTGCAGTTAAGAAAGTTCGAAAGGAAAAATCTCCAAAAACAAAGTCAAAG 642
Query 918 aGCAGTCGCAAGACACCCAAGGAAGGAAATAGTGCACAGGAAATTTTAAAAACTGAAGAT 977
||| |||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||
Sbjct 643 AGCGGTCGCAAGACACCCAAGGAAGGAAATGGTGCACAGAAAATTTTTAAAAGTGAAGAT 702
Query 978 AAAGATAC-AGATACCACTATAGCCGAGCAAGTAACACCGGAAAAATCTCCAAAAACAAA 1036
|||| || | ||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 703 AAAGTTATTA-ATACCACTATAGCCGAGGAAGTAACAACGGAAAAATCTCCAGAAACAAA 761
Query 1037 GTCAAAAAGCAGTCGCAAGACACCCAAGGAAGAAAATTGTGCACAAGAAA-TTTTAAAAA 1095
||| ||||||||||||||||||||||| ||||||||| ||||||| |||| |||| ||||
Sbjct 762 GTCTAAAAGCAGTCGCAAGACACCCAAAGAAGAAAATAGTGCACA-GAAAATTTTTAAAA 820
Query 1096 CTGAAGATAAAGATAAAGATACAGATACAGATACCATTATAGCCGAGGAAGTAACAACGG 1155
|||||||||||||| |||||| || | | ||||||||||||| ||||||||
Sbjct 821 GTGAAGATAAAGATACAGATAC-----CA----C--T-ATAGCCGAGGAAGGAACAACGG 868
Query 1156 ATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 ATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGA 928
Query 1216 AGGTTAATCGTACAAAGGTACTCGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAG 1275
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 929 AGGTGAATCGTACAAAGGTACTTGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAG 988
Query 1276 ACATGGGGGCTGTTGGACGCGTGGTTGTTTCAGACACAACCGGGGACATGTACTTGGACT 1335
||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 989 ACATGGGGGCTGTTGGACGAGTAATTGTTTCAGACACAACCGGAGACATGTACTTGGACT 1048
Query 1336 TGAAAGG 1342
|||||||
Sbjct 1049 TGAAAGG 1055
Score = 662 bits (358), Expect = 0.0
Identities = 385/398 (97%), Gaps = 2/398 (1%)
Strand=Plus/Plus
Query 1340 AGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTTGTTAACGTAGG 1399
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1083 AGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTAGTTAACGTAGG 1142
Query 1400 TCAGACAGAGGCTAAGATTGAAGCTATTATGAATGACTTCATACAGCTGATACCACAATC 1459
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1143 TCAGACAGAGGCAAAGATTGAAGCTATTATGAATGACTTCATACAGCTGACACCACAATC 1202
Query 1460 TAATGTCTACGAGGCAGAAACAATGGTGGAAGGCACTCTGGAAGGATTTACGTTCGAATC 1519
|||||| |||||||||||||||||||| |||||||||||||| |||||| | ||||||||
Sbjct 1203 TAATGTGTACGAGGCAGAAACAATGGTAGAAGGCACTCTGGAGGGATTTTCATTCGAATC 1262
Query 1520 AGATGATGAAAGTAACAAAAACGCCAAGACTGCTGT-AAAGCCAGCTGATCAAAGTGTAG 1578
||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 1263 AGATGATGAAACTAACAAAAACGCCAAGACTGCT-TCAAAGCCAGCTGATCAAAGTGGAG 1321
Query 1579 GCACAGAGGAAGaaaccaacacaaaagccaaacccaaagccaaagcaaaaggcgaaactg 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GCACAGAGGAAGAAACCAACACAAAAGCCAAACCCAAAGCCAAAGCAAAAGGCGAAACTG 1381
Query 1639 ttataggaaaaaagAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTA 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TTATAGGAAAAAAGAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTA 1441
Query 1699 GAAATTCTGCCCCTAAGAAGCCAAAAGCCAAGAAATGA 1736
|||||||||||||||||||||||||| |||||||||||
Sbjct 1442 GAAATTCTGCCCCTAAGAAGCCAAAATCCAAGAAATGA 1479
Score = 183 bits (99), Expect = 3e-45
Identities = 119/129 (92%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 890 ggaaaaatctccaaaaacaaagtcaaaaaGCAGTCGCAAGACACCCAAGGAAGGAAATAG 949
||||||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 741 GGAAAAATCTCCAGAAACAAAGTCTAAAAGCAGTCGCAAGACACCCAAAGAAGAAAATAG 800
Query 950 TGCACAGGAAATTTTAAAAACTGAAGATAAAGATACAGATACCACTATAGCCGAGCAAGT 1009
||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||
Sbjct 801 TGCACAGAAAATTTTTAAAAGTGAAGATAAAGATACAGATACCACTATAGCCGAGGAAGG 860
Query 1010 AACACCGGA 1018
|||| ||||
Sbjct 861 AACAACGGA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5