BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24640.1

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483255 jgi|Araly1|483255|fgenesh2_kg.4__2315__AT5G24640.1         588    1e-167


> Ahg483255 jgi|Araly1|483255|fgenesh2_kg.4__2315__AT5G24640.1
Length=447

 Score =  588 bits (318),  Expect = 1e-167
 Identities = 408/451 (90%), Gaps = 7/451 (2%)
 Strand=Plus/Plus

Query  1    ATCAAGTCTCAAATCTAAATAAGTAAACATGAAGAGTGAAGGTCGTCATCAAGGCGTCGT  60
            ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct  1    ATCAAGTCTCAAATCAAAATAAGCAAACATGAAGAGTGAAGGTCGTCACCAAGGCATCGT  60

Query  61   AAGGACAGGAATGATTCATCCGCGGGGCTTTAATCCTCG-ACACACCAACCGACTCGATT  119
            ||| ||||||||||||||||||||||| |||||||| || || ||||||||| |||||||
Sbjct  61   AAGAACAGGAATGATTCATCCGCGGGGGTTTAATCCGCGAAC-CACCAACCGGCTCGATT  119

Query  120  CACCACCAGTTTTTGGAGATTTTACCAAAATGCAACCAAAGACTACCAACCATTCAAATA  179
            ||||||||| |||||||||||||||||||  || | ||||||||||||||||||||||||
Sbjct  120  CACCACCAGCTTTTGGAGATTTTACCAAAGCGCCATCAAAGACTACCAACCATTCAAATA  179

Query  180  TCATCGGAGAAAGTGAGCGGTCCAAGTACAGTAATTGTCATGTGTCGCCGGCTATCAAGT  239
            ||| |  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct  180  TCACCAAAGAAAGTGAGCGGTCCAAGTACAGTAATTGCCATGTGTTGCCGGCTATCAAGT  239

Query  240  CGGGCCATAAATCTAAGGGTCGCCGTAAGCTACAACCGACAAGTTGGTGGAGTGAGGATA  299
            ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CGGGCCACAAATCTAATGGTCGCCGTAAGCTACAACCGACAAGTTGGTGGAGTGAGGATA  299

Query  300  AGCTAGACCGGCTCATCGGGTCGGATTCATCCTCTGCTAAGGATATTTTGGATATGTTAT  359
            ||||||| |||||||| ||||| || || ||||||||||| |||||||||||||  ||||
Sbjct  300  AGCTAGATCGGCTCATTGGGTCAGACTCGTCCTCTGCTAAAGATATTTTGGATACATTAT  359

Query  360  GTAGTGAAGATCATGATGAGTATTAATAATTATCATGATGATT-AAC-CATCTCGTTTAA  417
            || |||||||| |||||||  ||||||  || |||| |||||| ||  |||||| ||| |
Sbjct  360  GTGGTGAAGATGATGATGAACATTAAT--TT-TCATCATGATTTAAATCATCTCATTTGA  416

Query  418  GATGTATGAAGATTATTGTTTTTTATTTTAT  448
            |||||||||||||||||||||||||||||||
Sbjct  417  GATGTATGAAGATTATTGTTTTTTATTTTAT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17666037707


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5