BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24655.1

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942023 jgi|Araly1|942023|scaffold_602567.1                        492    1e-138
  Ahg942024 jgi|Araly1|942024|scaffold_602568.1                        348    3e-95 


> Ahg942023 jgi|Araly1|942023|scaffold_602567.1
Length=320

 Score =  492 bits (266),  Expect = 1e-138
 Identities = 302/320 (94%), Gaps = 0/320 (0%)
 Strand=Plus/Plus

Query  61   cataaaataaaaagagagaaaatgggaaaaggaggaaaCTATGTGATGGTGGCGGCTTCG  120
            ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    CATCAAATAAAAAGAGAGGAAATGGGGAAAGGAGGAAACTATGTGATGGTGGCGGCTTCG  60

Query  121  GAGGTAGAGGAGCTACGACAGAAGAACGGAGAGATGGAGAAAGCGGTGGAGGAGATGAGG  180
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   GAGGTGGAGGAGCTACGACAGAAGAACGGAGAGATGGAAAAAGCGGTGGAGGAGATGAGG  120

Query  181  AAAGAGATGTTGCAGTTGTGGAGGAGGACACAGGTGGCTGAGGAGGCTGAGGAGCATCTT  240
            ||||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||| 
Sbjct  121  AAAGAGATGGTGCAGTTGTGGCGGCGGACGCAGGTGGCTGAGGAGGCTGAGGAGCATCTA  180

Query  241  TGCTCTCAGCTTGCCGAGCTTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACACT  300
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  TGCTCTCAGCTAGCCGAGCTTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACTCT  240

Query  301  CGCATCATCTTTCTAACAAACCAGCTCTCTCGTTTCTCCTCCGACTCTGCCTCTCCCTAG  360
            ||||||||||| || || ||| |||||||||||||||||||||| || ||||||||||||
Sbjct  241  CGCATCATCTTCCTTACGAACGAGCTCTCTCGTTTCTCCTCCGATTCCGCCTCTCCCTAG  300

Query  361  AATAGATATTTGTGTAAAGG  380
            ||||||||||||||||||||
Sbjct  301  AATAGATATTTGTGTAAAGG  320


> Ahg942024 jgi|Araly1|942024|scaffold_602568.1
Length=326

 Score =  348 bits (188),  Expect = 3e-95
 Identities = 262/297 (88%), Gaps = 8/297 (3%)
 Strand=Plus/Plus

Query  79   aaaatgggaaaaggaggaaaCTATGTGATGGTGGCGGCTTCGGAGGTAGAGGAGCTACGA  138
            |||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct  19   AAAATGGGGAAAGGAGGAAACTATGTGACGTTGGCGGCTTCGGAGGTGGAGGAGCTACGA  78

Query  139  CAGAAGAACGGAGAGATGGAGAAAGCGGTGGAGGAGATGAGGAAAGAGATGTTGCAGTTG  198
            | |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct  79   CGGAAGAACGGAGAGATGGAAAAAGCAGTGGAGGACATGAGGAAAGAGATGTTGCAGTTG  138

Query  199  TGGAGGAGGACACAGGTGGCTGAGGAGGCTGAGGAGCATCTTTGCTCTCAGCTTGCCGAG  258
            ||| || ||||||||||||| ||||| || ||||||| ||| ||||||||||| ||||||
Sbjct  139  TGGCGGCGGACACAGGTGGCGGAGGAAGCGGAGGAGCGTCTCTGCTCTCAGCTAGCCGAG  198

Query  259  CTTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACACTCGCATCATCTTTC-TAAC  317
            |||||||| ||||||||||||||||||||||||||||||  ||| ||||| | || | | 
Sbjct  199  CTTGAAGCTGAATCTTTAGACCAGGCTCGTGATTACCACTTTCGTATCAT-TGTCCTCAT  257

Query  318  AAACCAGCTCTCTCGT-TT-CT-C---CTCCGACTCTGCCTCTCCCTAGAATAGATA  368
             ||| ||||||||||| || || |   ||| | ||||||||||||||||||||||||
Sbjct  258  GAACGAGCTCTCTCGTCTTTCTTCAGACTCTGCCTCTGCCTCTCCCTAGAATAGATA  314



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19115950089


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5