BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24660.1

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942024 jgi|Araly1|942024|scaffold_602568.1                        460    4e-129
  Ahg942023 jgi|Araly1|942023|scaffold_602567.1                        355    2e-97 


> Ahg942024 jgi|Araly1|942024|scaffold_602568.1
Length=326

 Score =  460 bits (249),  Expect = 4e-129
 Identities = 287/305 (94%), Gaps = 3/305 (1%)
 Strand=Plus/Plus

Query  71   TCTTAAAAATGGGGAAAGGAGGAAACTATGTGACGGTGGCGGCTTCCGAAGTGGACGAGC  130
            |||| |||||||||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct  14   TCTTTAAAATGGGGAAAGGAGGAAACTATGTGACGTTGGCGGCTTCGGAGGTGGAGGAGC  73

Query  131  TACGACGGAAGAACGGAGAGATGGAGAAAGCTGTGGAGGAGATGAAGAAAGAGATGTTGC  190
            ||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||
Sbjct  74   TACGACGGAAGAACGGAGAGATGGAAAAAGCAGTGGAGGACATGAGGAAAGAGATGTTGC  133

Query  191  AGTTGTGGCGGCGGACACAGGTGGCGGAAGAAGCGGAGGAGCGTCTCTGCTCACAGCTAG  250
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  134  AGTTGTGGCGGCGGACACAGGTGGCGGAGGAAGCGGAGGAGCGTCTCTGCTCTCAGCTAG  193

Query  251  CCGAGCTTGAAGCAGAATCTTTAGACCAGGCTCGTGATTACCACTCTCGTATCATCT-TT  309
            ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | | 
Sbjct  194  CCGAGCTTGAAGCTGAATCTTTAGACCAGGCTCGTGATTACCACTTTCGTATCAT-TGTC  252

Query  310  CTCATGAACGAGCTCTCTCGTCTTTCTTCAGACTCTGCCTCTGCCTCTCCGTAGAATTAG  369
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  253  CTCATGAACGAGCTCTCTCGTCTTTCTTCAGACTCTGCCTCTGCCTCTCCCTAGAAT-AG  311

Query  370  ATAGA  374
            |||||
Sbjct  312  ATAGA  316


> Ahg942023 jgi|Araly1|942023|scaffold_602567.1
Length=320

 Score =  355 bits (192),  Expect = 2e-97
 Identities = 251/280 (90%), Gaps = 2/280 (1%)
 Strand=Plus/Plus

Query  77   AAATGGGGAAAGGAGGAAACTATGTGACGGTGGCGGCTTCCGAAGTGGACGAGCTACGAC  136
            ||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||
Sbjct  20   AAATGGGGAAAGGAGGAAACTATGTGATGGTGGCGGCTTCGGAGGTGGAGGAGCTACGAC  79

Query  137  GGAAGAACGGAGAGATGGAGAAAGCTGTGGAGGAGATGAAGAAAGAGATGTTGCAGTTGT  196
             |||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||
Sbjct  80   AGAAGAACGGAGAGATGGAAAAAGCGGTGGAGGAGATGAGGAAAGAGATGGTGCAGTTGT  139

Query  197  GGCGGCGGACACAGGTGGCGGAAGAAGCGGAGGAGCGTCTCTGCTCACAGCTAGCCGAGC  256
            |||||||||| |||||||| || || || ||||||| ||| ||||| |||||||||||||
Sbjct  140  GGCGGCGGACGCAGGTGGCTGAGGAGGCTGAGGAGCATCTATGCTCTCAGCTAGCCGAGC  199

Query  257  TTGAAGCAGAATCTTTAGACCAGGCTCGTGATTACCACTCTCGTATCATCTTTCTCATGA  316
            ||||||| ||||||||||||||||||||||||||||||||||| |||||||| || | ||
Sbjct  200  TTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACTCTCGCATCATCTTCCTTACGA  259

Query  317  ACGAGCTCTCTCGTCTT-TCTTCAGACTCTGCCTCTGCCT  355
            |||||||||||||| || || || || || |||||| |||
Sbjct  260  ACGAGCTCTCTCGT-TTCTCCTCCGATTCCGCCTCTCCCT  298



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20298773348


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5