BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24670.2
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476263 jgi|Araly1|476263|fgenesh2_kg.2__1393__AT5G24670.1 1917 0.0
Ahg918993 jgi|Araly1|918993|scaffold_100274.1 1851 0.0
Ahg926438 jgi|Araly1|926438|scaffold_201999.1 255 6e-67
Ahg926491 jgi|Araly1|926491|scaffold_202052.1 219 8e-56
> Ahg476263 jgi|Araly1|476263|fgenesh2_kg.2__1393__AT5G24670.1
Length=1508
Score = 1917 bits (1038), Expect = 0.0
Identities = 1226/1312 (93%), Gaps = 32/1312 (2%)
Strand=Plus/Plus
Query 492 GTCTCTGTGTCTTGTTGCTTGGAGC-AAGCTCTCCAGCGCTCAAG--AAT-AGATAA-A- 545
||||||||||||| |||||| |||| ||||| | |||| | || ||| || ||| |
Sbjct 104 GTCTCTGTGTCTT-TTGCTT-GAGCAAAGCT-T-TAGCG-T-GAGTTAATAAG-TAATAG 156
Query 546 ATAAA-ATTATGGATTCAGATGCATGGGAAATTATCCATATACCTGAAAAGCCTTCATTG 604
| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 157 AGAAAGATTATGGATTCAGATGCATGGGAAATCATCCATATACCTGAAAAGCCTGCATTG 216
Query 605 TCACCTGACCATCAGCCCACTGTGAAGGTATATGCTAGCCTAATCAAACCCAGATTTGCC 664
||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||
Sbjct 217 TCACCTGACCATCAGCCCACTGTAAAGGTATATGCGAGTCTAATCAAACCCAAATTTGCC 276
Query 665 AATACGATAGTGAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGTCATGTTAAA 724
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 277 AATACGATAGTCAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGCCATGTTAAA 336
Query 725 AGGGTGAAGAAGAAGATTCTGCCAGATTGCGCTTATTGGACAGGTGAAACTCAGTTGACT 784
|||||||||||||||||||| ||||| | | | | ||||||||||||||||||
Sbjct 337 AGGGTGAAGAAGAAGATTCTTCCAGA-T---C------G-C-GGTGAAACTCAGTTGACT 384
Query 785 GTCATCTTATGTCTAGCACCTGAGCACAACGATCAG-TTGAGTGACATGCCACCTGATGT 843
||||||||||||||||||||||||||| |||||| | |||| | ||||||||||||||
Sbjct 385 GTCATCTTATGTCTAGCACCTGAGCACCACGATC-GTTTGAACAATATGCCACCTGATGT 443
Query 844 GCAGAGACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGC 903
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GCAGAAACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGC 503
Query 904 TGCGGTATCCAAAGAAGAGTGGGAAGAACAAAGTAAGATATGGCCTACTTCATTTCATCC 963
||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 504 TGCGGTATCAAAAGAAGAGTGGGAAGAACAGAGTAAGATATGGCCAACTTCTTTTCATCC 563
Query 964 ACCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTG 1023
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 564 CCCAACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGATACACAATCGATCTG 623
Query 1024 CAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGC 1083
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 624 CAAGTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATAAACCACTTGTAAATGC 683
Query 1084 TGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATA 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TGCAGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATA 743
Query 1144 TGCATCATCTGCTCCTCGTGAC-ATGACTAGCGCAGAGACCAGGCCCTTCGAGGAAACAG 1202
|||||||||||||||||| ||| || |||||||||| ||||||||||||| |||||||||
Sbjct 744 TGCATCATCTGCTCCTCGCGACAAT-ACTAGCGCAGGGACCAGGCCCTTCAAGGAAACAG 802
Query 1203 GGGAAATATGTTTAAATGACACACTTGAAAAACAGAATGGTTCATTGTCTGCTCTTTCTT 1262
|||||||||| ||||||| || ||||||||||||||||||||||||||||||| || |||
Sbjct 803 GGGAAATATGCTTAAATGGCATACTTGAAAAACAGAATGGTTCATTGTCTGCTGTTGCTT 862
Query 1263 GTCTGAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAGTGGC 1322
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 863 GTCTAAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAATGGC 922
Query 1323 ATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCCTCTTCTGCCAGAGATAGAAATC 1382
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 923 ATCCTCTTAGGCATGCTTCCATGGTTGCCATTGAATCTTCTTCGGCCAGAGATAGACATC 982
Query 1383 TGTTTCCCAATCCATCCAAGA-TTTTTGATCAGGATCATGTTCCGCCCTCAAATACAGAT 1441
||||||||||| ||||| ||| |||| | || ||||||||||| ||||||||||||||||
Sbjct 983 TGTTTCCCAATTCATCCGAGAGTTTTCG-TCTGGATCATGTTCAGCCCTCAAATACAGAT 1041
Query 1442 TCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAATGACAGCAGA 1501
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1042 TCTCCGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAATTGACAGTGGA 1101
Query 1502 GAAGAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATT 1561
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1102 GAAGAGACTCTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGATATT 1161
Query 1562 TTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAA 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAA 1221
Query 1622 CGGATTTTCTATGCTTTTCCAAACACCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTT 1681
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1222 CGAATTTTCTATGCTTTTCCAAACCCCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTT 1281
Query 1682 CAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGAC 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 CAAGGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGAC 1341
Query 1742 GCACTTAGACAAATGACCACGGTCTAATGCATTGTTGTAGTCGATTGATAAT 1793
||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1342 GCACTTAGACAAATGACCATGGTCTAATGCATTGTTGTAGTCGATCGATAAT 1393
> Ahg918993 jgi|Araly1|918993|scaffold_100274.1
Length=1244
Score = 1851 bits (1002), Expect = 0.0
Identities = 1165/1242 (94%), Gaps = 17/1242 (1%)
Strand=Plus/Plus
Query 548 AAA-ATTATGGATTCAGATGCATGGGAAATTATCCATATACCTGAAAAGCCTTCATTGTC 606
||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 15 AAAGATTATGGATTTAGATGCATGGGAAATCATCCATATACCTGAAAAGCCTGCATTGTC 74
Query 607 ACCTGACCATCAGCCCACTGTGAAGGTATATGCTAGCCTAATCAAACCCAGATTTGCCAA 666
||||||||||||||||||||| ||||||||||| || ||||| ||||||| |||||||||
Sbjct 75 ACCTGACCATCAGCCCACTGTAAAGGTATATGCGAGTCTAATTAAACCCAAATTTGCCAA 134
Query 667 TACGATAGTGAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGTCATGTTAAAAG 726
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 135 TATGATAGTCAGGCATTTATGTAAGATTGCTCCTCTAGAAGATCTTCGCCATGTTAAAAG 194
Query 727 GGTGAAGAAGAAGATTCTGCCAGATTGCGCTTATTGGACAGGTGAAACTCAGTTGACTGT 786
|||||||||||||||||| ||||| || | | ||||||||||||||||||||
Sbjct 195 GGTGAAGAAGAAGATTCTTCCAGA-------TA---G-C-GGTGAAACTCAGTTGACTGT 242
Query 787 CATCTTATGTCTAGCACCTGAGCACAACGATCAGTTGAGTGACATGCCACCTGATGTGCA 846
||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||||
Sbjct 243 CATCTTATGTCTAGCACCTGAGCACCACGATCAATTGAACAATATGCCACCTGATGTGCA 302
Query 847 GAGACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGCTGC 906
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GAAACTCGTTGATCCCTATGAGTTGAGTCCTTTTATTACACAAGTATGCAAATATGCTGC 362
Query 907 GGTATCCAAAGAAGAGTGGGAAGAACAAAGTAAGATATGGCCTACTTCATTTCATCCACC 966
|||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct 363 GGTATCAAAAGAAGAGTGGGAAGAACAGAGTAAGATATGGCCAACTTCTTTTCACCCCCC 422
Query 967 AACCTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTGCAA 1026
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 423 AACTTACAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGATACACAATCGATCTGCAA 482
Query 1027 GTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGCTGC 1086
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 483 GTTCATGAGAGTTGTTATTGATATGGCAGTATCTGGTCATAAACCACTTGTAAATGCTGC 542
Query 1087 AGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATATGC 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGTGATAGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCAAGTATATGC 602
Query 1147 ATCATCTGCTCCTCGTGAC-ATGACTAGCGCAGAGACCAGGCCCTTCGAGGAAACAGGGG 1205
||||||||||||||| ||| || |||||||||| ||||||||||||| ||||||||||||
Sbjct 603 ATCATCTGCTCCTCGCGACAAT-ACTAGCGCAGGGACCAGGCCCTTCAAGGAAACAGGGG 661
Query 1206 AAATATGTTTAAATGACACACTTGAAAAACAGAATGGTTCATTGTCTGCTCTTTCTTGTC 1265
||||||| ||||||| || |||||||||||||||| |||| ||||||||| || ||||||
Sbjct 662 AAATATGCTTAAATGGCATACTTGAAAAACAGAATTGTTCGTTGTCTGCTGTTGCTTGTC 721
Query 1266 TGAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAAATTGTAGCCAGTGGCATC 1325
| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 722 TAAATCCCTGGCAATGGAGTTTGCAGCCGCATGACACTGAAATTTGTAGCCAATGGAATC 781
Query 1326 CTCTTAGGCATGCTTCCATGGTTGCCATTGAATCCTCTTCTGCCAGAGATAGAAATCTGT 1385
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 782 CTCTTAGGCATGCTTCCATGGTTGCCATTGAATCTTCTTCGGCCAGAGATAGACATCTGT 841
Query 1386 TTCCCAATCCATCCAAGATTTTTGATCAGGATCATGTTCCGCCCTCAAATACAGATTCTC 1445
|||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 842 TTCCCAATTCATCCGAGATTTTTGGTCAGGATCATGTTCAGCCCTCAAATACAGATTCTC 901
Query 1446 CGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAATGACAGCAG-AGAA 1504
||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||
Sbjct 902 CGGCTAAAAAGCAGAAAACAAGCAGTCAGAGTCCAGACGTCCAAAGTGACGGC-GAAGAA 960
Query 1505 GAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATTTTC 1564
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGACTCTTAGACATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTATGACATTTTC 1020
Query 1565 CTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAACGG 1624
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTCCTGTTGGAGCCCTGTGCAATGTGTGCTATGGCGCTTGTGCATCAAAGAATAAAACGG 1080
Query 1625 ATTTTCTATGCTTTTCCAAACACCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTTCAA 1684
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATTTTCTATGCTTTTCCAAACCCCACGGCAGGTGGTCTCGGGAGTGTTCATAGACTTCAA 1140
Query 1685 GGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGACGCA 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGGGAAAAGAGTTTGAACCATCATTATGCAGTGTTTAGAGTTTTGCTGCCTGATGACGCA 1200
Query 1745 CTTAGACAAATGACCACGGTCTAATGCATTGTTGTAGTCGAT 1786
||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1201 CTTAGGCAAATGACCATGGTCTAATGCATTGTTGTAGTCGAT 1242
> Ahg926438 jgi|Araly1|926438|scaffold_201999.1
Length=370
Score = 255 bits (138), Expect = 6e-67
Identities = 156/165 (95%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 973 CAATATAGATGGCATCGGTGGGTTCAGCGAGGAGGAAACACAATCAATCTGCAAGTTCAT 1032
||||||||||||||| |||||||| ||||||||||| |||||||| |||| |||||||||
Sbjct 92 CAATATAGATGGCATTGGTGGGTTTAGCGAGGAGGACACACAATCGATCTCCAAGTTCAT 151
Query 1033 GAGAGTTGTTATTGATATGGCAGTATCTGGTCATACACCACTTGTGAATGCTGCAGTGAT 1092
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 152 GAGAGTTGTTATTGATATGGCAGTATCTGGTCCTAAACCACTTGTAAATGCTGCAGTGAT 211
Query 1093 AGTTGATCCTTCAGTTAGGCGAATAATAGCTAGTGAAACTGATCA 1137
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 212 AGTTGATCCTTCAGTTAGGCGAATAATAGCTACTGAAACTGATCA 256
> Ahg926491 jgi|Araly1|926491|scaffold_202052.1
Length=286
Score = 219 bits (118), Expect = 8e-56
Identities = 128/133 (96%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 1496 AGCAGAGAAGAGACTGTTAGAGATCCTTCAATGGAAAGGCCGTACCTCTGCACTGGTTAT 1555
||| ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 108 AGCGGAGAAGAAACTCTTAGAGATCCTTCAATAGAAAGGCCGTACCTCTGCACTGGTTAT 167
Query 1556 GACATTTTCCTCCTGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGA 1615
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GACATTTTCCTCATGTTGGAGCCTTGTACAATGTGTGCTATGGCGCTTGTGCATCAAAGA 227
Query 1616 ATAAAACGGATTT 1628
|||||||||||||
Sbjct 228 ATAAAACGGATTT 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5