BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24680.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489330 jgi|Araly1|489330|fgenesh2_kg.6__2464__AT5G24680.1 1897 0.0
> Ahg489330 jgi|Araly1|489330|fgenesh2_kg.6__2464__AT5G24680.1
Length=1337
Score = 1897 bits (1027), Expect = 0.0
Identities = 1249/1354 (92%), Gaps = 24/1354 (2%)
Strand=Plus/Plus
Query 61 AAAGATGTCAGCTTTGTGTCCTGTCTGCAATCTCACGCTTCCTCTCTCCCTAATCCAAAG 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATGTCAGCTTTGTGTCCTGTCTGCAATCTCACGCTTCCTCTCTCCCTAATCCAAAG 60
Query 121 CCATGTGAATTCCCACTTCGAAGACGATGAAATCAATCCACAAATCGAAACCGATCACCA 180
|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 61 CCATGTGAATTCCCACTTCGAAGACGATGAAATCGATCCACAAATCGAAAGTGACCACCA 120
Query 181 CTTGGCTCTGCAACTCGCTTCTGATGATCATTCTTCTGATGATCCTTCTTCGTCTTCCTC 240
|||||||||||||||||||| | || |||||| ||| |||||| ||||| ||||
Sbjct 121 TTTGGCTCTGCAACTCGCTTC---T--TC-TTCTTC---TGACCCTTCTCCGTCTACCTC 171
Query 241 TGCTTCATCATCTAACAACGTTGCCTCCTTGGTCCAGTTACAGACTAAGAGTCAATTCTA 300
||| ||||||||| |||| |||| ||| ||||| || |||||||| ||||||||||||||
Sbjct 172 TGCGTCATCATCTGACAAAGTTGTCTCTTTGGTGCATTTACAGACCAAGAGTCAATTCTA 231
Query 301 TAGTGTAGGTCATGGTGGTTTGATTTGTTTGCTGAGGAACTGTCTGGAGTCAGAACTGAA 360
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 232 CAGTGTAGGTCATGGTGGTTTGATTTGTTTGCTGAGGAACTGTTTGGAATCAGAACTGAG 291
Query 361 ATTGAAGTCGAAACCTTTAGAGTGTAGTACTAGTTTACTATCAGGCTTTGTTGATCATTT 420
|| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 292 ATCGAAATCGAAACCTTTAGAGAGTAGTACTAGTTTACTATCAGGCTTTGTTGATCATTT 351
Query 421 TCAATCTTCGAA-GGAGGATAAAGGTTGGGGATGTGGATGGAAGAACATTCAAATGCAAT 479
||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 352 TCAATCTTC-AATGGAGGATAAAGGTTGGGGATGTGGATGGAGGAATATTCAAATGCAAT 410
Query 480 GCTCTCATTTGCTTTCTCATAGAGAAGAAGCTAAGAGAGTTCTCTTTGGTGGTTCTAATT 539
| ||||||||||||||| ||||| ||||||||| |||||||||||| |||| |||||||
Sbjct 411 GTTCTCATTTGCTTTCTTGTAGAGTAGAAGCTAAAAGAGTTCTCTTTAGTGGCTCTAATT 470
Query 540 TTGTTCCTGATATTCCTTCGCTCCAGCGATGGCTTGAGTTAGCTTGGAACAAGGGGTTTG 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 471 TTGTTCCTGATATTCCTTCGCTCCAGCGATGGCTTGAGTTAGCTTGGAGCAAGGGGTTTG 530
Query 600 ATGTTTCTGGAGCTCTTCATTTTGATAATCGAATATGTGGTTCCAAGAGATGGATTGGAA 659
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 531 ATGTTTCTGGAGCTCTCCAGTTTGATAATCGAATCTGTGGTTCCAAGAGATGGATTGGAA 590
Query 660 CTACTGAATGTGCTGCGTTGTTACGTTCTTTCGGGTTGAAAGCGAGGATTGTTGATTTTG 719
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 591 CTACTGAATGTGCTGCGTTGTTACGTTCTTTCGGGTTAAAAGCTATGATTGTTGATTTTG 650
Query 720 CTCCCGAGAAGTCTAAATCGATGTATCTTTCAGTTCCTGGTTCTGCTATTGCACCCAAGG 779
|||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 651 CTCCTAAGAAGTCTAAGTCAATGTATCTTTCAGTTCCTGGTTCTGCTATTGCTCCCAAGG 710
Query 780 TAAAGTCATATGGTCCCATGGACAGATATATGGTTAAAAAGGGGGGAAGTGGGAAGGGAA 839
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 711 TAAAGTCATATGGTCCCATGGACAGATATGTGGTTAAAAAGGGGGGAAGTGGGAAGGGAA 770
Query 840 AAGCAGTTGACTCTCATAGTTCTAATTCTTCTAGGATCAGCAAAGGAGCGGTTTTAATGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AAGCAGTTGACTCTCATAGTTCTAATTCTTCTAGGATCAGCAAAGGAGCGGTTTTAATGG 830
Query 900 AATGGGTTTGGAATTACTTCTCAGATAACAGGTTAAGTGTTTCATCCGGTGTTCATATTA 959
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 831 AATGGGTTTGGAATTACTTCTCAGATAACAGGTTAAATGTTTCATCCGGTGTTCATATGA 890
Query 960 CGAATAAAGGGCCCTTGTATTTCCAACATGAAGGGCACTCGAGGACAATTGTTGGGGTTC 1019
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 891 CGAACAAAGGGCCCTTGTATTTCCAACATGAAGGGCACTCGAGGACAATTGTTGGGATTC 950
Query 1020 AGAGACGGTTGCAAGGAACTACATTTACTCCTCAGTACAATCTCCTAATTTTGGACCCGG 1079
|||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 951 AGAGACGGTTGCTAGGAACTACATTTATTCCTCAGTACAATCTCCTGATTTTGGACCCGA 1010
Query 1080 CTGATTTTACTAGAGCTATAGAGATAGCGCTTATAGAGAAGAGAGGATGGGAGGGATATC 1139
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1011 CTGATTTTACTAGAGCTATAGAGAAAGCGCTTATAGAGAAAAGAGGATGGGAGGGATATC 1070
Query 1140 TTAAAAGAGGAGCTCACACACTGAAATGCCCCGAGTATCAGATGCTGTACGTTGATAATG 1199
|||||||||||||||||||| ||| || ||||||||||||||| ||||||||||||| |
Sbjct 1071 TTAAAAGAGGAGCTCACACATTGACGTGTCCCGAGTATCAGATGTTGTACGTTGATAAAG 1130
Query 1200 GAATTGCTGATGGAGAGGAGTTGGAGAAGCTCAAAACCATTGATAGTCACTTTGTTGAAT 1259
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1131 GAATTACTGATGGAGAGGAGTTGGAGAAGCTCAAGACCATTGATAGTCACTTTGTTGAAT 1190
Query 1260 TCTAAT-GACTTCCATCAAAAATTGAAGAATGGTTCTTGAAGATTCTTAGATTAATTGCA 1318
|||||| | ||| ||| |||||||||||||||||||||| |||||| |||||| ||||||
Sbjct 1191 TCTAATTG-CTTTCAT-AAAAATTGAAGAATGGTTCTTGGAGATTCATAGATTGATTGCA 1248
Query 1319 ATTTT-TCAGGACTAGGAGT--TA-GACTAC-TATGACTTTCCAAGTTTCAACGAACGTA 1373
||| | | | || | | | || | | || | | | | ||||||||||| ||| ||
Sbjct 1249 ATTGTAT-ACTTCT-GTA-TCATATG-CAACATTTTA-TAAACAAGTTTCAACAAACATA 1303
Query 1374 TAAGATGTGGCTATTTATTAGAAACATTGAGAAA 1407
||||||||||||||||||||||||||||||||||
Sbjct 1304 TAAGATGTGGCTATTTATTAGAAACATTGAGAAA 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5